Array 1 29889-28213 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS996351.1 Desulfovibrio piger ATCC 29098 Scfld0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29888 29 100.0 32 ............................. GTCACGTCGCATCCCACGGAGCCCAACGGATT 29827 29 100.0 32 ............................. ACAATATCCTCGTCTTACCTGACGAAAAGGCC 29766 29 100.0 32 ............................. AATGCACGTGACCCTGTTAGCGTCACGGCGAA 29705 29 100.0 32 ............................. GTTTTATGCGGCATGGATGACTGCGCTTGTGG 29644 29 100.0 32 ............................. CTCCGCTTTTTCCATCTGGCGCCCGGCAGCGA 29583 29 100.0 32 ............................. TTGCCGCCCCAGCCGCCGAACAGGCCGCCGCC 29522 29 100.0 32 ............................. AGAGAAGGGGGGGAGGGGGAAATGAGGCTTGC 29461 29 100.0 32 ............................. GACGCTTTGGAGGTCGGCATACTTACGTCGTC 29400 29 100.0 32 ............................. GTTCGGCCACTGTAGACAAAGACCTCGTGCGC 29339 29 100.0 32 ............................. TCCTTTGTGGCAAATTCCGGCGTTGAGGTCAA 29278 29 100.0 32 ............................. CTGGACCTCCAGTTCCGCGACGGCTGCCAACA 29217 29 100.0 32 ............................. TTTTCTGCCTGTTCGAGGGTCATAATACGGTT 29156 29 100.0 32 ............................. CGGGAAAGGCCAGCTTGCCGGAGTCCTTGGCA 29095 29 100.0 32 ............................. CTTAATACCAGCATTACGGATAGCATCGGCAA 29034 29 100.0 32 ............................. TATGCAGAAAAGATCAAAGGTATCATCGCTAG 28973 29 100.0 32 ............................. GCGGTATAGCTGGAAGACACCACAAATCGCAG 28912 29 100.0 32 ............................. TCACGACGCTTTTTCCCCGCCATATGTCCTGC 28851 29 100.0 32 ............................. GAAAGCACACTGCCGGCCGCTCGCGGCACGAT 28790 29 100.0 32 ............................. TCAGCACCATAACTGCCCGCCTTGATTCCCTG 28729 29 100.0 32 ............................. TCGTGCGCTTTTTTGGGCATGATGCTTTTAAG 28668 29 96.6 32 ............................T GTTGCTCAGAATGGAACGCGAGCTCGCAGTGC 28607 29 100.0 32 ............................. GGTATGAGGAAAGCCGCGGATAAAGCCGACGA 28546 29 100.0 32 ............................. GGGGGCTGTGATGGCAAAATTCGTCTCCGAGC 28485 29 100.0 32 ............................. GAACTCTCGGACAGCACATGCGCGGAGACATG 28424 29 100.0 32 ............................. TCGTGCGCTTTTTTGGGCATGATGCTTTTAAG 28363 29 100.0 32 ............................. CGGTAGCTCTCGTACATGGCTTCGCAGGCAGC 28302 29 93.1 32 ............G............G... ATGTACGCCAGCGCATAGTACGGTGGCAGCGT 28241 29 75.9 0 ............T........C.CTC.AT | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.8 32 GTATTCCCCACACGCGTGGGGATGAACCG # Left flank : AGCGCCGCAAGCAGACCGGCGGCACCCTGTCCGGCGGCGAACAGCAGATGCTGGCCATCAGCCGCGCCCTCATGGCCCGGCCCAAGCTGCTCCTGCTGGACGAACCCTCGCTGGGTCTTGCGCCCATCATCATCCAGCAGATCTTCCAGATCATCCAGCGCGTCAACGCCAACGGCACCACGGTCTTCCTGGTGGAGCAGAACGCCAACCAGGCCCTGCGCATCGCCCACCGCGGCTATGTGATGGAGAACGGCCGCATCGTCACCAGCGACAGCGCCGAGAACCTGCTCAAGAGCGAGGACGTGCGTTCCGCCTATCTGGGCATGTAACATCAAGAGAGCGTGACTGCCCTGCCGGGCAGTGTTTTACGAGGGGAAGGAGCCGCTTTACAAAGCTCCTTCCCCTTTTTATCGTCATCGGAGCAGGCTTGCAGCACGCATGGCTCGGTAGCACGCTGGAGCTCTGCCAACAGTCTGTTATTTCTTGCATCTTCCTGAAGA # Right flank : GCAAAAAAGCCTCTTTCCGCATATACGGAAGAGGCTTTTCTACTATCATGGAAACAGGGACGAACCCTGCCGCGATGTGGCGTTTTATCTTTTACTCCACCACCTTCGGCGTGCCCGAGACGGGCAGGGTGCCGGTGCGGATGAAGGTATCCACCAGACCGAAGACCAGATCATTGCCGCAGAAATGCCCGCGCGCGATGGAGGCCCGGAACTCGGGCAGGCGCTCCTCGAAGCGGCGCAGCAAGGCGGGCTCCAGGGTCATCATGTCGGCCTGCATGCCGTAGTTCAAACGTTCGAGGTACAGGGCATTGAAGCACTGTTCCACCATGGCCTTGAGCGGCAGGCTCAGGATGGGTTTGCCCAGGTGCAGGGCTTCGGTCATCAGGGTGTGGCCGCCGCCCTGGATGACGTAGGAACAGCCTTCCAGCAGCTTGAGGAAGCCCTCTTCGCTCTTCTTCATGAAGATGACGTTGCCTTCGCGCCCTTCCGTCCGGTCATAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 166545-167245 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS996351.1 Desulfovibrio piger ATCC 29098 Scfld0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 166545 29 100.0 32 ............................. CCCTTCGTCTCGCTAATGCTTCTGTCCGCGCT 166606 29 100.0 32 ............................. CCGCTGATCTTCCAGGAGCGCACCAGCCCGGA 166667 29 100.0 32 ............................. GGGACCGCGTGCAAGGGCAACAGGTGGTCGAT 166728 29 100.0 32 ............................. GTGCTGGGCTGCCGGAAGACCGCGCAGGATGC 166789 29 100.0 32 ............................. GCTGATGAGTGCCTGCCAGATGTTGTGCTTGC 166850 29 100.0 32 ............................. CTCGTGTTCGTCCCTCGATCCTATTGTGGTAC 166911 29 96.6 32 ..............T.............. AATATTACCGACGAAATCAAAAAGACCAATGA 166972 29 96.6 32 ..............T.............. CACTATGTCAGGTGTCACGGATGTGACATGCA 167033 29 100.0 32 ............................. AAATACATTCTTCTTTTTTATTGTCTTCTTTG 167094 29 100.0 33 ............................. AGCTGCAATGGCTGCCCCAACGGTAGACCGCGC 167156 29 96.6 32 ..............T.............. TGCTGCGGCAGCTTTTGCTTCTGCCCCGGGTC 167217 29 79.3 0 ..............T......G..GGG.A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.4 32 GTATTCCCCACGCACGTGGGGATGAACCG # Left flank : TACGTCTGGGATGCCGTGACATGTTCAGGGAACAGAAGTTGCTGCGCCGCATCATCCCCGTGATGGAAGAGGTCCTGGCAGCTGCCGGCCAGGCCTTGCCTTCGGCACATCCCGAGGCTGTCCCTGTGGCTTTTCCTGACAAAAAGGGGCTGGGTGATGCTGGTCATCGTAACTGAGGCCGCCCCGCCCCGGTTGCGCGGCTATCTGTCGCGCTGGCTGCTGGAAGTCCGTGCCGGCGTCTATGTGGGGGATTATTCTGTGCGCGTTCGTGAAAGATTGTGGAAGGTCGTCAGTGATGAGATACAGGAAGGGAATGCGGTGATGGCCTGGAGCACGAACAGCGAGTCAGGATTTTCCTTTGTGACGACCGGGAAAAACCGCAGGGAACCGGTGGACTGGGACGGCTTTTCCCTGGTTCGATTCTTGCCGGATCAGGCTGTACCTGATCGGTAGATTTTTGCAGCGATGATAACCTTTGAGAACTCTTCATGTTTTCTGGA # Right flank : ATACCGTCCGCCGCAGGCACACCAAAAAGCCCGGTATGGGAATTCCATACCGGGCGTGCCTTGCGGGCGGGTGCCGTCAGCCTGTCAGCCCGCGGCGGGGATGTGTTTGCCGACTAGGCAAAGAACATCTTGGACAGGGTCATGGGATCGATGTACTTGCCGTCCTTGTAGACGCGCATGTTGCCGGAGGCGATCTCATCGATGAGGATGACCTTGCCGTCGGCGTCATAGCCGTATTCGAACTTGATGTCGTACAGGACCAGGCCCTTTTCCTTCAGGTCGTCGGCCACGATCTGGGTGATTTTCTGGGTCATGTCCTTGATGTCGTCGTACTGCTTGTCGGTCATCACGCCCAGGGCCACCAGGGCGTCCTTGGTGACCAGGGGGTCGCCCAGGGCGTCGTTCTTGAAGGTGGTTTCCACATAGGCGGGCAGGTCGGCGCCTTCTTCGATGTAATCACCGTAACGGCGGATGAAGCTGCCCACGGCCTTGTGGCGGCA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : GTATTCCCCACGCATGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //