Array 1 125423-117826 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027666.1 Ottowia oryzae strain KADR8-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 125422 28 100.0 32 ............................ AATGTGGTCTTGATGGCGGCGGCAGTCTCGCG 125362 28 100.0 32 ............................ TTCGCCTTCGCCTTCGCCAGCGCCAACGCCAG 125302 28 100.0 32 ............................ TACGACTTAGGGGCCAACGCGGCCCAGATCGC 125242 28 100.0 32 ............................ TTGACCTTTTCGATCATGGGCGCCAGGTAGTC 125182 28 100.0 32 ............................ GTCAGTTTTTTGTGCGGGCCACTCCCAGCTGC 125122 28 100.0 32 ............................ AGCGCAGCAACGCCGCCACCGAAGCCCAGGCC 125062 28 100.0 32 ............................ TGCCAGGCGTTGCCCGCTGCGGTGGTGACGCC 125002 28 100.0 32 ............................ ACTAGGGCGTTGAGGGCGGTTTCTTTGGCATC 124942 28 100.0 32 ............................ TAAAGGCGCGCTAGCGCCTCACCGCAACTCGA 124882 28 100.0 32 ............................ TGCAGGCGCTGCACGAGCACGCCCGTGACTTC 124822 28 100.0 32 ............................ TTTGCCAAGCAGCTGGCCAAGAACCTGCTGCA 124762 28 100.0 32 ............................ GCCAGCGCTGCCACCGCCGCCCACGGCCATGG 124702 28 100.0 32 ............................ TTTCGGCGCGGCCTTGGCCGCGCTGCCGTAGA 124642 28 100.0 32 ............................ AGCGGCATCGGGTCGGAGGTGAACGAGCTGAC 124582 28 100.0 32 ............................ AGCAGCAGGCGCGCAACGCGGCGGCGCTGGCC 124522 28 100.0 32 ............................ GTAGGGAGCACACTCGTGTGCGATGCACATCA 124462 28 100.0 32 ............................ GGCTGCCGGCGGCGGCGCGGCAGGCGCCAGCG 124402 28 100.0 32 ............................ ATGTCTGCGCCGCGCTTTTGCGCGAGGCTGGC 124342 28 100.0 32 ............................ ACGGCAGCGGCGCGGCCCAGCGCGTGGTCGGG 124282 28 100.0 32 ............................ AAATCCGGGCACAGATCAAGCCACGGCCCGGC 124222 28 100.0 32 ............................ AAATGCAAAAATTCCAGGATAAAACTATTTTT 124162 28 100.0 32 ............................ GTAGTGCGCACCGTCACCGTCAGCGGCAACGC 124102 28 100.0 32 ............................ TGCGCGTGTCCGTGGGCTACGCCCAGCGCGGC 124042 28 100.0 33 ............................ TCAACAGCACGATCAGCAAATTGCGCTGGGGCA 123981 28 100.0 32 ............................ TTGCCCGGCGCCATGGAGCGTGGTTTGACGAG 123921 28 100.0 32 ............................ GCGTGCATGCGGCTTGGGCAGGTCATCGTGAC 123861 28 100.0 32 ............................ AGCGCCGTGACCCCGGACATCGTGGACGAGAT 123801 28 100.0 32 ............................ AGCAGAACGGCCGGTGGCGTGAAGGTGCCGCT 123741 28 100.0 32 ............................ CATGAGAACGATCATCCTCGTCCTGGCCGCAC 123681 28 100.0 32 ............................ AGCCCATGGCCTGCGGATCAGCCGCACCCGCG 123621 28 100.0 32 ............................ AAATCAAGCGCCGCACCAGTTCCGTGCGGCCC 123561 28 100.0 32 ............................ TGATCAACGACGAATCCGACTTCGGTCTGGCG 123501 28 100.0 32 ............................ TTCACCAGGTTTTGCGGTAGGGCCCAGGCTTC 123441 28 100.0 32 ............................ TGCGTCATGGCGCCCAACGTGGCGCGCACCTG 123381 28 100.0 32 ............................ TGGACAACCTTGCTTGGTACGCCGCGCTTCGG 123321 28 100.0 32 ............................ GCGATGACGCCCGGCCCAGCGATCCCATTGCA 123261 28 100.0 33 ............................ CTCGGCGAAATTCAAGCGATCAACCAGCGTGCG 123200 28 100.0 32 ............................ ATGCGGGCGCGGCGCCGGAATAGATGTCGATA 123140 28 100.0 32 ............................ TTGATGCGGAACGATGAGAACGTATCGAGGCC 123080 28 100.0 32 ............................ AGACGTAGGTCACGCGATCCACCGCGACGGGC 123020 28 100.0 32 ............................ GGATCTCGTTCGCGAAGAAAACCTCCGCCGCA 122960 28 100.0 32 ............................ GTATCGGCGCGCGCAGGGGGCCGCTCGTGTCT 122900 28 100.0 32 ............................ TTCGCCCAGTGGGAACGCATGCAGGTTGATCC 122840 28 100.0 32 ............................ TTGATGCGCTCGCGCACGTATTGCTTCCACCC 122780 28 100.0 32 ............................ AGACGTAGGTCACGCGATCCACCGCGACGGGC 122720 28 100.0 32 ............................ TTCGCGGCCAGCTCGGTGGCCAGGTACAGGTG 122660 28 100.0 32 ............................ TCGCGCGGCTGGAGGGTGTTCGCCGGGCCTGC 122600 28 100.0 32 ............................ TTCGTGGATGCGCGCGCCAGAGGGAACCGCTC 122540 28 100.0 32 ............................ GAGCTGGCCCTGGCCTGACCAACCACCCATTC 122480 28 100.0 33 ............................ TGACTGGCAGAAAAGCAAGGGCGCCATCATCGA 122419 28 100.0 32 ............................ AGCGCTTGACTGATAGGCGCTAGCGGGTGATT 122359 28 100.0 32 ............................ AGAACCGGCCCTGCGCGCCAGCGTGGCGTGGT 122299 28 100.0 32 ............................ TCGCGCCAGGTCAACGCGGCCGCGCTGGGGAG 122239 28 100.0 32 ............................ CATTACGCCAGTTACTACAAGCTGCGCTATGG 122179 28 100.0 32 ............................ TGCCGTCATTCGCTTGACGTTGACGCGGTTTT 122119 28 100.0 32 ............................ GCGCTCGGCGTTGACGGCGGCGGTGGCGTCGG 122059 28 100.0 33 ............................ GAATCCGGCGAGAAGCCGGTGCCGCTGGCCTAC 121998 28 100.0 32 ............................ AGTCGTGAACGGTGCGAACGGAAACGTCAAGC 121938 28 100.0 32 ............................ TGCACGTAGCCGCGCGCGCCCCACGCCAGCAG 121878 28 100.0 32 ............................ TGAATCAGAACCACGTCACGCTCGGCAAACGG 121818 28 100.0 32 ............................ ACGCCGGCGCGGGTGTAGCCGTCGCGCTCCAT 121758 28 100.0 32 ............................ CTGACGCAAATGCGTGGGCTGGGCGATGCCAT 121698 28 100.0 32 ............................ ACAAGCCATTCAGACAAGGGGAGACCTCCATA 121638 28 100.0 32 ............................ GCGCAGCTGGACCGCGCGCCGCTGTCGGACTA 121578 28 100.0 32 ............................ TAAAGGCGTGGCGCGCAAGCAAGCCGCGTCCG 121518 28 100.0 32 ............................ GTGGGCTTCACCGCAACGCCTGCGCGCATGGA 121458 28 100.0 32 ............................ CGCTGACGCGAGCAACTTTCATCGACTTCGCG 121398 28 100.0 32 ............................ TGCTCAGCGACGCCGACATTGCGCGGCTCAGT 121338 28 100.0 32 ............................ AATCAAGAGAAAGGGAGAGTGAGTAGGCAATC 121278 28 100.0 32 ............................ GAGAAGCAGCGCAACGATTTCGCGGGCGCCGA 121218 28 100.0 32 ............................ ACACCGTCACGCTGGGCTGGCCAATGGCCTGA 121158 28 100.0 32 ............................ GTATCCGCCCCGATGCCGGTTGGCATCATGGA 121098 28 100.0 32 ............................ TCGATCTGGTCGGGCGTTACGCGGCGCAGCTC 121038 28 100.0 32 ............................ TTGTTCCAGGCGTTGCTGCCGCCTGGCCAGCT 120978 28 100.0 32 ............................ AATGATGGGGCTTTCTACGACGCCCCGGCGCC 120918 28 100.0 32 ............................ TGCAGCCACGTCCTGATGCTGCCTGACTGGCA 120858 28 100.0 32 ............................ CAGCGCAATAAGGCCAGTCTGCAACCCCTGCA 120798 28 100.0 32 ............................ TCGCGCAGCAGCGCATTGAGGTAGATAGCGCA 120738 28 100.0 33 ............................ TGCTGATGCTGGCGCGCACCGCCGGGGTATCTG 120677 28 100.0 32 ............................ GCCAAACCGGCTGCCACCGGATCGACTTGTTG 120617 28 100.0 32 ............................ TTGCCAACACCGGCCAGCTGCAGGCTGCATGC 120557 28 100.0 32 ............................ TTGGTGCGTTTTCGGCGGCTGATGGTCAGCAC 120497 28 100.0 32 ............................ TTGACCTCAAGGACCCTCACGCCGTGGTGGTA 120437 28 100.0 32 ............................ AGGTCAGCGTGGGCATGTGCAGCAGCTGGGAA 120377 28 100.0 32 ............................ ACGCACAGTAAATCGGCCGGGCGATTGCAGCT 120317 28 100.0 32 ............................ GGTAGCACTCAGCGGGCGAGTAATACCGGCCA 120257 28 100.0 32 ............................ TACTGCCGCAGCGACCGCTGCAAGTTGGGGAC 120197 28 100.0 32 ............................ GAGGTGGGCGGCTACTACGTGGTCTCCGAAGA 120137 28 100.0 32 ............................ GGTTTCAACCAGCGCCTGATAGGTCTTGATGC 120077 28 100.0 32 ............................ CAACCTCGTCCAGAACAGTGCGCCCGCTGGGC 120017 28 100.0 32 ............................ ACGATGCGCGCGGCCGCACGGCGCAGCACGCG 119957 28 100.0 32 ............................ ACACGAAGCGCGCGGCGCCGTGGGCCGAGAAA 119897 28 100.0 32 ............................ CGCATTCGTGCGCCCCTTGCATTCACGCTTCA 119837 28 100.0 32 ............................ AACCGCCTGCCCCTCATCCTCACCAACGGCGC 119777 28 100.0 32 ............................ TGGTCGCCACCGGCCTGGGCCAGCGCTGCATG 119717 28 100.0 33 ............................ TGGGCCGCCCCGACGTGCGCAGCCTGCCCACCG 119656 28 100.0 32 ............................ AGGTCAAGTACGTCATCAAACCCGGCTTCGTC 119596 28 100.0 32 ............................ ATCACGCGGGCGAAGGTGTCGGCCCAATCGTC 119536 28 100.0 32 ............................ CTCGCCATCGGTGGCGGTGACGGTGAGGGAAT 119476 28 100.0 32 ............................ TCCGCCGCAGCCGGTGTTGGTGTTGGTGCTGA 119416 28 100.0 32 ............................ AGATGGAGCGCAGAGGCCCCTCGCGTCCCATC 119356 28 100.0 32 ............................ TAGTCCGCGTCGGTGAAGGACTGCGGCTTGCC 119296 28 100.0 32 ............................ TTCATGATCTGAATCGCGATCTCACGCTGCCT 119236 28 100.0 32 ............................ AGTGCGGCAGCGGTGATGCGCACATGCGCATC 119176 28 100.0 32 ............................ TCGGCCTGGGTCAATTCGGGGACAAACGCCAG 119116 28 100.0 33 ............................ CAACAGTGGCATGCCCCTCTCGGGCACGCTCAG 119055 28 100.0 32 ............................ TATCAGCGACGCAGTGACCTCGGCCAATGCAG 118995 28 100.0 32 ............................ ATACCGCAAGATGCTGCCCGACGACAACCTGT 118935 28 100.0 32 ............................ ACGTCGGCAAGCTCGGGACGTTCAGATGCGGG 118875 28 100.0 32 ............................ TGGACGCATCCATGTATTCTGGTGCGGACGAG 118815 28 100.0 32 ............................ CCATTGGGATAGTCCGCCGTCGGCGGGATGAT 118755 28 100.0 32 ............................ TACGAGGAAATCTGATGGCGAACGATCTCCTC 118695 28 100.0 32 ............................ AGCCAGCAGTGCCCTTGGCCAGCCCAGTCATG 118635 28 100.0 32 ............................ ATGTCCTCAAATTTCTTGCCGCCAGACATATC 118575 28 100.0 32 ............................ AGCCCCATCTGCTTGCGCTGGCACTGCTTGTA 118515 28 100.0 33 ............................ AATTCGCCTTCTTTTGCGGGCTGGATATTCGGC 118454 28 100.0 32 ............................ ACAAACCCCGCAGCACCAGCCAGCGCACCAAC 118394 28 100.0 32 ............................ GGGCGCAAGTTGATGTCCGTGGCCACGAACAC 118334 28 100.0 32 ............................ TCTCTGTACGTTCCTGTGCTGGTCTTGGGCGC 118274 28 100.0 32 ............................ ATAGAGAACGGCCATGTGGTGGGCACGCCATT 118214 28 100.0 32 ............................ GTATGCACCGGCAGGTGCGGGTCGTAGGGAAC 118154 28 100.0 33 ............................ CGCTGATGGTGCCGCGCCCGCCAGCCAGGTTGC 118093 28 100.0 32 ............................ AGCACGCACTGGCGGGGGAAGCTCTCCACGAT 118033 28 100.0 32 ............................ AACGAGTGGCAGACATTCGGGCAGTGTTTTGC 117973 28 100.0 32 ............................ ACCGCCCAAAAAGCCGTTGACGACGGCGCTGA 117913 28 100.0 32 ............................ ACATCGAAATTCAGCTGGCTATCCACGGTGGG 117853 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 127 28 100.0 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : AGGTGCTGGAGCAGCTTATGGCGCTGGGCTGGCTTCAGGGCATGCGCGACCACACCAAGGCCTCGGCACTGGCGTCGGCCCCTGCGGGCGCACCTCACCGGCAGGTGGCGCGGCGGCAATTCAAAACCAACGCTGAACGCCTGCGCCGCCGCCGCATGCAACGCAAAGGCGAAACCGCAGCACAGGCCGCAGCCCACATTCCCGACAGCGTGGAGCGTCGCCCGAACCTGCCCTATGTGCAACTGCGAAGCAGCAGCACGGCGCAGCCCTTTTGCCTTTTCATTGACCATGGTCCCTTGCAGGCGCAGGCCGTTTCAGGCTCTTTCAACACCTACGGCTTGAGCAACAGCGCCACCATTCCTTGGTTTTGACCCTTTTTCGTTGCCCACCCCAGGGGCCAGGAAAATCAAGTACTTAGCGCTGCTCGGCGTAAGAGGGGGAAAAGCCATGGAAATGGCTTTGTTCTTTAAAAATCAAGGAGATAACGAAAATCCGTAGAA # Right flank : ACCATCTCGGCCTACGGCATTACCGACGCATTGTCCTCTGCCGCGTAGGCTTATGAACACTCATCCGCGCGCCCGCGTTGCCCAACCCATTCAGCGCCGGGCATCGCGGAAGGTGGCGGGACGACCGCGCGGCGGCGCGTATCAGGCGTGAACTGGCAGCTGGCGCCCGCCCATGCTGCGCTGGCCGCTATTCTTACCATAGCGATCGGCGCTCAGCCCGTCGGTGCTGATGTCGGGCTGGCGGCCCAGCGTCAAGTCGGCCAGCAGCTTGCCGCTGCCGCAGGCCATGGTCCAGCCCAGGGTGCCGTGGCCGGTGTTGACCAGCAGGTTGTCCCAGCCAGGGGCGCGGCCCAGGATGGGCGTGCCGTCGGGGGTCATGGGGCGCAGGCCGGTCCAGAACGATGCGGCGGGCACGTCGCCCGCGCCTGCAAACAAGCCTTGCGTGACCAGTTCCAGCGTCTCGCGGCGGCGCGGGTTCAGGCGCAGGTCGTGCCCCGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //