Array 1 296787-295294 **** Predicted by CRISPRDetect 2.4 *** >NZ_DACWWF010000001.1 Salmonella enterica subsp. diarizonae strain CCUG30040 SAMEA7113395-rid11193783.denovo.01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 296786 29 100.0 32 ............................. AAACCAACAGCCGGTGATGTGGGTGCATTGCC 296725 29 100.0 32 ............................. CGGTGAATTTCAGTAACGGCAATCCGGACGCT 296664 29 100.0 32 ............................. ATGAGAACCCCGCCGACGCGGGGTTTTTGCTA 296603 29 100.0 32 ............................. GCGGCGCATATACTCTCCGGCCAGCTCCATAG 296542 29 100.0 32 ............................. GATATTGCCGTGGCTTTGGGGTATTCGAAAAC 296481 29 100.0 32 ............................. CGCAGCGCCGTGCTGGTATCACTGACGAGCAG 296420 29 100.0 32 ............................. ATACTGGCGCGCCATTACCATCGCCCTGGCTG 296359 29 96.6 32 ............................T GGCTTTCGGATCACCGCTAGCCCACGCATCGC 296298 29 100.0 32 ............................. AGTCTGGCAGACCGCAGCACCCTTCCCAGCGA 296237 29 100.0 32 ............................. CGACGGGAATCTGTGAGAGGTGTATCCTGACA 296176 29 100.0 32 ............................. TTTCCCTTGCCGTTGTTGTACTCAAACCAGTG 296115 29 100.0 32 ............................. CAGGAAGTGCCGGGATATGTGGACGAAATACG 296054 29 100.0 32 ............................. ACCCGTTTAAATACGCGTGGGCAAAACAGGAG 295993 29 100.0 32 ............................. CCAGTCTTGATACTGCTGTGTGTTCTTCCCGT 295932 29 100.0 32 ............................. GGTGGTACGGCCTTGATAGTCTTCACGACACC 295871 29 100.0 32 ............................. GTTCGATCCTGTATCAGGTCGGTGGTCTTGAT 295810 29 100.0 32 ............................. TTCAGCAGGACCCCGCACAGCACCCCGGAGAT 295749 29 100.0 32 ............................. TCCACGATAACCTAGGCTGGGTTGAAAGGGCA 295688 29 100.0 32 ............................. GATAAACTGACCCACCCCCGTTACGGGCTGGG 295627 29 100.0 32 ............................. GTGGACGACCTTGAGCATTGATTTAGGTTACG 295566 29 100.0 32 ............................. TGCAGCCCGGAATTGTCGATATAACCAACCAG 295505 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 295444 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 295383 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 295322 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGTATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //