Array 1 1-324 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VHOF01000009.1 Vibrio cholerae strain 2204 NODE_9_length_168464_cov_41.7506_ID_17, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
         1	    23	  82.1	    32	-----.......................	GTCCGGGGTTCGGTAGTAAGTCGACCCGATGT 	
        56	    28	 100.0	    33	............................	ATTCAAATCTTTTATGCATTGCTAGTACGAACA	
       117	    28	  96.4	    32	.................T..........	AATTGGGGGTAATGGGCTAGTAGGGTCATTGG 	
       177	    28	 100.0	    32	............................	TTTTTCTCATAAGTGCGGATGTAGCGTTCAGC 	
       237	    28	  96.4	    32	...........C................	GCACTGGTTGCAGTGGAATTGCAGCTCGTGCT 	
       297	    28	  92.9	     0	.........................TT.	|                                	
==========	======	======	======	============================	=================================	==================
         6	    28	  94.6	    32	GTTCACTGCCGTACAGGCAGCTTAGAAA	                                 	       

# Left flank :   |
# Right flank :  AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCTCGCTCCACCAGCACATCATTGGTTTTCTGCGCTCAAGGTAGTCAGTGCGGTTATAGGCACTGCGGACCTGATTAT

# Questionable array : NO	 Score: 5.68
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//


Array 1 16264-16471 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VHOF01000015.1 Vibrio cholerae strain 2204 NODE_15_length_16518_cov_37.9533_ID_29, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
     16264	    28	 100.0	    32	............................	TTTACCTTCGGTTCCTTCCTTGAAGGTCGATT	
     16324	    28	 100.0	    32	............................	TACAATTTTGAACGTAACACAATTCTAGGCGA	
     16384	    28	  96.4	    32	...........................T	ACTACGATTGAGTCTTCCTCTACATCATGTAC	
     16444	    28	 100.0	     0	............................	|                               	
==========	======	======	======	============================	================================	==================
         4	    28	  99.1	    32	GTTCACTGCCGCACAGGCAGCTTAGAAA	                                	       

# Left flank :   GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT
# Right flank :  TCGGTGTAAGTGCGCGGCTCTTCTTTAGTCATGTTCACTGCCGCACA

# Questionable array : NO	 Score: 5.81
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGCACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [73.3-38.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.51,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//