Array 1 513691-516304 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQHF01000003.1 Listeria monocytogenes strain CDPHFDLB-FM17-00114 FM17-00114_Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 513691 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 513757 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 513823 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 513889 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 513955 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 514021 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 514087 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 514153 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 514220 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 514286 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 514352 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 514418 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 514484 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 514550 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 514616 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 514682 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 514748 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 514814 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 514880 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 514946 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 515012 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 515078 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 515144 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 515210 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 515276 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 515342 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 515408 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 515474 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 515540 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 515606 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 515672 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 515738 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 515804 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 515870 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 515936 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 516002 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 516068 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 516134 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 516200 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 516266 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [516291,516297,516300] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //