Array 1 29098-27132 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBVI010000055.1 Bacteroides timonensis isolate AP1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 29097 47 74.5 30 ...A.......T.C.T.CCC......T.....A....AA......G. GTTGTAATAGTATTTCCCCAATACATCAAT A [29054] 29019 47 85.1 28 A......C..AT.....TT.............A.............. ATCATAACCTCAAATGATTTACGTCCCA 28944 47 97.9 30 A.............................................. ATCTTCCACTCGACTTACCTATAAGGCAAA 28867 47 100.0 30 ............................................... ATACGGATTTGATGGCAGCACCGTGATTGA 28790 47 100.0 30 ............................................... GTTGCGACTTGAAGATGTATCGACGGATAG 28713 47 100.0 30 ............................................... AGCAGTCTTGCTAACATCGTGCGCTTGTAT 28636 47 100.0 30 ............................................... TGTTACGGTCTCTTCTGAGACTCAAGTTCT 28559 47 100.0 30 ............................................... CGTATTTTCCGCCACTTTGTGCGCCGCCCC 28482 47 100.0 30 ............................................... CTGACGGTTATGTGAACTATTCGATAGGTG 28405 47 100.0 29 ............................................... GGCAGAAAAACAATCCATACGCACCGTTC 28329 47 100.0 30 ............................................... CTCTACATTCAAACGCTATTGCGGAAGTAT 28252 47 100.0 30 ............................................... TATCTGACTTGTGGCTCCTTTGTATGGGCT 28175 47 100.0 30 ............................................... TAAACATTCTACATTGTCCCAGGTTCCAAC 28098 47 100.0 30 ............................................... TGATAATTGTACCCGTCTTCCGGATCGAAC 28021 47 100.0 29 ............................................... ACCAACACCGGATACCGGTCAGCTGCCAC 27945 47 100.0 30 ............................................... CCTTGTTTGTCTTTTAAAAACCCACCGTCG 27868 47 100.0 30 ............................................... GTGGATATTCAATTGGAACAACGGTAACAC 27791 47 100.0 30 ............................................... GAGTTGATAAACAAGACGCGCGGCGACTTG 27714 47 100.0 29 ............................................... CCTTTGAAAGTGAACCTATTAATGCTATA 27638 47 100.0 30 ............................................... TCAAATCCCCTTTAATAAGGACGTCTACTT 27561 47 100.0 30 ............................................... TTTCGTACCTTAGTGGGACACTAGAGCGGG 27484 47 100.0 29 ............................................... ACCGGAAGAAACTTACTATAAACGACCTC 27408 47 100.0 30 ............................................... TGATGATTCGGACGGTATGCAGGACTATTA 27331 47 100.0 30 ............................................... TATCTCGCTGCGGCAGAAGTTGCCTTGTTT 27254 47 100.0 29 ............................................... TAATAAAAAGAGTGTCTGTTATCAGGGCA 27178 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 26 47 98.4 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGACCCATTGGAAACAAC # Left flank : GCCTCAATATCTTCGAATATACTTTCGACGAGCATGATGAAACGGTAGCTTATTCTCTGTCTATTCCTTTTGTCTCTACGTTTGTTTTTGCAGCGGTGATGAAGCATCAGGAGGCCCCGGGTACTACGTTCAAGAAGCACATGGCTATTGCTAAGGGCTTGCTGAGTGAGGATGATTACTTGCTTCAGGAAATTCTTTTTAATCCGCGCACGCCCTCGCAAGTGGAAAATATTCGTCTGGAACTGAAAAATTTATTGGAAATTATCAGTACGAAGGATGCGGAAGGGATGAAGCAATATCTGACGAAGATTAGGGAAAAGATAAAATAGACAGGTGGGATTAAGGGATTGAAGAGAGGAGAGGTACGGAAAAGGAAGTGGGGCTTCTCTCTTCAATTTGTTAATAAAGAGAGGGGATGATATTTAGGATATTGGGGGAGCATACTTATTTCTAAAATTATTAAAAATGGTTGAATCTTGGTAGGAATGATATGCAATTCT # Right flank : AGATTATTCATTATTGACTGTATTCCAATCATTTACAAATCGAATTAAGATTAAAAAATGAGATTGTTTCCGTAAGAGAAATCCCGCCAATAGGCGGGATTTCCTCTTTCAGAACAGTTCCAACTGCTGACCCGGTGTATTTACAGACTGCAATTTCTTGCCATGAAAAAGCTCTATATTGCCAAATTGCTTGTCCGTAATGCACATAATTCCGACTTGCCCATATTCAGGCAAGAAAGATTTAACTCTTTTTATATGCACTTCCGCATTTTCACTACTGGCACAATGGCGTACGTATATAGAAAACTGAAACATCGTGAATCCATCTTTCTGCAAATTCTTCCTGAAATCACTATAAGCCTTCTTGTCTCTTTTAGTGTCAGTTGGCAAGTCAAACAATACAAGTACCCACATAATACGATATTCACTGAACCTTTCCATGACAGGACGACAATTAGTATTTCATAAGATCGTCATTCAAAACTCGGATATATTATTCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGACCCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //