Array 1 2165296-2164328 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTL01000001.1 Prevotella disiens strain NCTC11157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2165295 46 85.1 29 CG.AAC..C-..................................... TAGAACCACTTAAAAGCCACACCAACCCC 2165220 47 100.0 30 ............................................... AGTAGATATACATTGTAGTTATGCGTGTTA 2165143 47 100.0 30 ............................................... ACGCGTGTTTTCCATCTCCAAAGTAAAAAA 2165066 47 100.0 30 ............................................... AGAAATACACCGCAGCAAGAGATGCACGTG 2164989 47 100.0 30 ............................................... ACCGATTACGATGTTATGTATTATAAAATA 2164912 47 100.0 30 ............................................... TAACGTTGTACATTCATTCCATGAGTTCGG 2164835 47 100.0 30 ............................................... TCACGTGCTTGTAACAAAAACTTTCCTTCT 2164758 47 100.0 30 ............................................... AGCTTGATACCCTTGATATGGACGAGTTCC 2164681 47 100.0 29 ............................................... CATTGGCACTCACCTATACAAGAATTGTT 2164605 47 100.0 29 ............................................... GGACTGTCAAAACTGGTAAAACGAGGACT 2164529 47 100.0 30 ............................................... CTGCTAAATGAAAGTATAGATTTACTATCC 2164452 47 100.0 30 ............................................... TTTGCAAAGTCTGATGATCTACATATATAG 2164375 46 78.7 0 .C.....................G...-.G.G.T..T.TT......A | TT [2164332] ========== ====== ====== ====== =============================================== ============================== ================== 13 47 97.2 30 GATGGTTTTGCTAATGCAAAGATACTAATTTTAAAGCAAATCACAAC # Left flank : TTCTTCCCGGTTTGCCCGGCTGTGTGTGTCCGTCTGCTTCATTCATGGGGCAGGCTGACACACTCTGCATTCACTTTCCGCTTCCGGCAAAAGGGACAGCGAAAAAAGAAAAATCATTTGAAAACCCGTAAAAGCACCTCTTGGCATAGGCGCAAAAGAAAGGGGCATTGCTTCATCTGTCTAAACATCGTTTAGGCGTGAGGCAATGCCCTTTTCTCCGGCTATGCGGCAGTCTGCACACGTTTGTTCAAAACTCGTTTTGGGCAATGGTGTTCCGACGGATAAAACCGCTTTTACGGAAAATTCTTATGAATGAGGGGATAAAAAAACGGGAGTTTATATCAAAATCTCGAATTAAATAGCTACTTTTGCATACGAAGAGTTCTTTGAAGGTTACGCAACGCGCAGAAGGATAATGCAGTAGATAACTAACTAAATCGTAACCTATTACTATCAAGAGCGATTAACCTACGCTCATTTCCAATAAATTACACTCTTTT # Right flank : ATAAATGCTTTTGATTCTTGGATTTATAAAAATATGTGTATCTTTGTAAGTGGGATAACCCAAATATTATAAATAAATGAGGTAAGAATTATGAATATAGGAGACAAGATACCAGAACTTTTGGGAATTGACCAAGATGGGAATGAAATAAAATTGAGTGATTATAAAGGTAAGAAAATTGTGCTTTATTTTTATCCAAAGGACTCTACTCCTGGTTGCACATCAGAGGCTTGCAGTTTTAGAGATAACTATGAACTCATGCAAAAGCGTGGTTATGCTGTAATTGGCGTTAGCGTTCAAGATGAAAAATCGCATAAAAAGTTTATAGAGAAGTACGATTTGCCTTTTCCGCTGATTGCTGATGTTGATAAGAAACTCAACGAAACATTTGGTGTTTATGGTGAAAAGAAAATGTGCGGACGTACTTATATGGGTACTTATCGTACAACATTCATTATTGATGAGGAAGGTAAAATCGAAGAAATTTTCACTCCAAAGCA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGGTTTTGCTAATGCAAAGATACTAATTTTAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 2219007-2220822 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTL01000001.1 Prevotella disiens strain NCTC11157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 2219007 47 100.0 30 ............................................... TGCGTTTAGTTTTTATTCCAATTTGCTTTG 2219084 47 100.0 30 ............................................... GCTTGCCACGTTCGAGTTCTGCGTGTATGT 2219161 47 100.0 30 ............................................... CTATATCCGCAACGGCAAAAGGAGGTCTAA 2219238 47 100.0 31 ............................................... TTATTCCGGCTATTGGTTTGGCGCGTTTCAA 2219316 47 100.0 30 ............................................... TGTCTTGTTGCTCTTTCAACGCTTTTAATT 2219393 47 100.0 30 ............................................... TAAAAGTAAATCACAGTGGATATAGAGTGG 2219470 47 100.0 30 ............................................... AGAAATTCGCAGCTAACCTTACCGACTGCA 2219547 47 100.0 30 ............................................... TAAAGGCATTTATAGGTTTATCGTCAGGGT 2219624 47 100.0 30 ............................................... TTAAGCGGGGGTAATAACCACACTCTTTCC 2219701 47 100.0 30 ............................................... TGCGAGGATTGTCAGTGTTTTGTCGGAGGC 2219778 47 100.0 30 ............................................... CTCATCGCATCGAGTGGAACTCCAGCTTGA 2219855 47 100.0 30 ............................................... TAACTTCGGCTGGATACTTCCAGTCCATTT 2219932 47 100.0 29 ............................................... ATGAATTGTTTTTGTGTCAAGGCTTCCCA 2220008 47 100.0 30 ............................................... AGAGGTGCTAGTCGCTGTGAAGGTTTCCCG 2220085 47 100.0 30 ............................................... ATTTTGGGCATATATACCCGACGACCAGCA 2220162 47 100.0 30 ............................................... ATAAGCAATATCCTTGAAACGCACAAGTAA 2220239 47 100.0 30 ............................................... AGAAAGGTACAGCTTATGTATAAGGAGCTA 2220316 47 100.0 30 ............................................... TATTTTTATAAATTATAATGCAAAAAACTC 2220393 47 100.0 30 ............................................... GGGCGAGCGATGCAAGCGAATAACTTATAT 2220470 47 100.0 30 ............................................... TGCTGCGTTCTGAAAACCAATGCCAGCTAA 2220547 47 100.0 30 ............................................... TTTACCATTTCAAGGACTTACAATGATTAA 2220624 47 100.0 29 ............................................... TGACTTACATTTACGACACTTAACATAAA 2220700 47 100.0 29 ............................................... CGCATCAAATTCTGTTGTTGCTTCATCAT 2220776 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 24 47 100.0 30 GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Left flank : AGTCAGTTTGCAGCTGAACTGCGTCTGGCTGCCGTCCACCGTGATGCGTCCCATGACGGGAACTGTCCCGTCCTTTTTCACTACCTGACGCTTGAGGTAGTAGATTACTGAAAATGTACTCTTCATTGTCCTTAATTTTTGGGTTTCAAAATTAGTTGGTGAAGAGTCCGGTGTTGGTACGCAAAACGGGGAGGAACGGCGCAATCTTTTTCCGTAACCTGATTTTTCGCATGAGTTATGGATAACTCACTATTCCTTAGAGCCTTGTTTCGCTATTCGTACCCGTTTGTCGCATTTTCGGGCATGGTTACGAACAAGTAACGTAGCGGCGTCAGGATTTGGCTTCGGCAGGGATTGTAATGGCTTCACGGATTATCGCCACTTCAACCAAAACCCTTGTAACTCAATTCTATCACTATATCTTTCCGCATTTCACTTTTTTGTAGTAACTTTGCAGACACAAAACCATCCTTACACTCATTATATAACCTGCCTACCCA # Right flank : CTATCTAACCCTTTAATATTTAGTTAGTGTTTACTGAATAATTTATAACTCTCTGATATTTAAGTTTATATAACTTTATTTCTTTGTTTGTTTAACTAGAAAATCGTACCTTTATATAGTTAAATCCATAGCAAGATGAAGTTTTACGCTCCAAAATACAAGCAACTTGACCTCGGTTTGCTCCGCTCATCCCTTGATGAGTTGGACAAGACAAACCGATGGGTGGCTCTCGGTGACCTTCTTCCATGGACAGAACTTGAGAAGGAATACAACTCAAGGTTGGACAATCAGAAGAAAGGTGCAGGGAACAAGCCGGCACGCATGATTCTCGGCGCAATGATTATCAAGCACAAACTAAACCTGAGTGATGCCGAGACCATCGAGATTATCAGAGAGAGTCCCTACATGCAGTACTTTTGTGGATTGCATGAGTTCACCGACAAGCCTATATTCGACCCGAGCCTATTCGTCACGATACGCAAGCGAATCTCAGAGGAAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 2222513-2222790 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTL01000001.1 Prevotella disiens strain NCTC11157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2222513 47 100.0 30 ............................................... CTAAATCACTTAAATTCGTTTGTGATGTCT 2222590 47 100.0 30 ............................................... CAGAATGGTCATCGGGGGTAGGTTTAAAAG 2222667 47 100.0 30 ............................................... TCCAATCAATGGAGTTAGTACAAAGCGACG 2222744 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 100.0 30 GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Left flank : CACCACAGCTGGGATGCCTACAACGAGAGCCAGGATCTCTTGCTACAGATTCAACTTTTCAAAGAACGCTTCGGCTATCTTCCGGCCACCATCCTTGCGGATAAGATTTACCTAAACAGGTCAAACCGAGATATACTTGAGGATTTTGAAATCCATTCATACTGCAAACCGTTAGGGCGACCACCGAAGGATCCTCCTTCAGATGAGATGAAATCCAGAATGGCCAAAGCCATCGGGGAGCGCAATGAAATCGAATGCTCATTCGGTACTGGCAAGAGAATCTATCGAGCCAATGACATAAGAGCCAAGCTTCCAGATACAGCACGATGCTGGACAGGAATGTGCTACTTCGTTAAAAACGTGATGAAGTTCCTCAGGGAACTTTGTCTTGCCCTGACCGAAATCTGGTGGTTTTTCATCATTATCGTCACTATGAGGGGCTACGTCTGCTACCCTCTGTCTGTGAAGAGATAATAATTCAGCAGACCCTAGTTAATTAT # Right flank : CCTAAATCGTATAATACACTGACGAATAGATGTATTACGAAAGATTCAAGGAAAAGAAAAATGCAAGCAAAATAAAGTTTCACTTGTTAAAGGTGGAACTTTATTTTTGCTAAAACAATTCTAATTGCGCTCCTGGTGCATTTGGTTTTTGTGGCTTTTTTCCATAAAATAATTTTATTTCCTCAAACTGTTTGTCGGTTATCCCCATTATTCCAACTTTACCATACGTTGGAATAAAAGTAGATATGCGCTTTGTATGAACTTCCATATTCTCCTTACTGCCACAATGGCGTATATAGATGGAGAACTGAAACATAGTAAATCCATCTTTCAAAAGATTTTGACGAAAAACAGCAGCTGCCTTTCGTTCTTTCTTTGTGTCGGTGGGCAAATCAAAAAATACTATTAACCACATACTTCGGTATTGACTAAATCTATAAGTTTCCACAATTTGTGTTTATAATTCAGGATAAGCAATTTTCTTTTGTTCACCACTAAAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 301887-300136 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTL01000002.1 Prevotella disiens strain NCTC11157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 301886 36 100.0 30 .................................... TTTTTACTTCTCCGCTTCTTCTTCCGTAAT 301820 36 100.0 29 .................................... TTAAATAAATTTATTATGACTTACGACAA 301755 36 100.0 30 .................................... CGACTCGGCTAAATCGCCTGCTTTGTCAGC 301689 36 100.0 30 .................................... GTCGTAGCGTTTCTCCTTTAATTCAAGCTC 301623 36 100.0 30 .................................... GCCCGTGAAGATTGTCTTATACATTACGAT 301557 36 100.0 30 .................................... TTGCATGGTTCATGGACATACACACAATAA 301491 36 100.0 30 .................................... ACCACCCATAAAAGCAGGGCAGTTGATAAT 301425 36 100.0 31 .................................... TAATTCTCCTGGTTTTAAATATCCGTCAGGT 301358 36 100.0 30 .................................... AACACATCAATATTACCGTCTATTGATGTA 301292 36 100.0 30 .................................... CGGAACAGTATATAAAGGTGGCAAAGATAT 301226 36 100.0 30 .................................... AAATTTCAATATATGAGCAATAAAGAAAAT 301160 36 100.0 30 .................................... AGTTCAACGATGCCAGCCTATTTGTTACTT 301094 36 100.0 30 .................................... TCGTTCTTCTTACATTGTCAGAACGTTGTT 301028 36 100.0 30 .................................... CTTACAGATGCGCTGTGGTGTATAACCAAG 300962 36 100.0 30 .................................... CATTCCGTATGCTAATGTGAGGGCTGCTCC 300896 36 100.0 31 .................................... CCCTTTTGGCGATATTTTATCAGAGGGGGAA 300829 36 100.0 30 .................................... CGTTACCTTTTTTATCCACTGCCGCTTGTA 300763 36 100.0 30 .................................... TAAAATAGGTATGATAACAATATTAGGGAC 300697 36 100.0 30 .................................... CTATAATCCACAACACGGTAAAGTTCAATA 300631 36 100.0 29 .................................... CTCGATATTGAGCCAATTATTTTCTGTTA 300566 36 100.0 30 .................................... ATGAAGTGGCGCAACAAGGTAATGAAGTAC 300500 36 100.0 30 .................................... CCTTGAACTTGACGGACTCAGCGCAATATC 300434 36 100.0 30 .................................... GGGCGGTAAATAAGCATACAATAATCGCAA 300368 36 100.0 30 .................................... GGAAGATTGAGAGGAAGTATCATATTCACG 300302 36 100.0 29 .................................... TTATTTTTTACAACTTTTTTGGGTGCAGT 300237 36 100.0 30 .................................... GCCACATGTGCACGATATTACGCTTTAAGT 300171 36 97.2 0 ................................C... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.9 30 GTTGTGATTTGATGTAGAATGCGCAAAAGAAATAAC # Left flank : AGAAATATCATTAATATAACGCTTATGCCCAAATACTGATTATTGTTCAAAAATTTGCAAAGATAGAGAAATGAGTGAATTTAGATTAAATGCTTACCATATTATGTGGCTATTTATTATGTTCGATTTGCCCACGATTACAACAAAGGATAAAAAAGAATCTGCTCGATTTAGAAAAGATTTAGAAAAAGATGGCTTTACAATGCATCAGTTTAGTATCTATGTTCGGTATTGTGCATCGTTAGAAATAGCCAAAGTGCATATAAAACGAGTAAAATCACTTGTACCTTTAGCAGGAAAAGTTAGCATACTAATGGTAACTGATAAACAATATTCTAAAATGATAAATATTTGGGGAGGAATAAAGAAAAAATCTCCTTCAACACCTGTACAGTTAGAACTTTTTTAGTAAATTTGCAGTTAAAAGATTATATCAAGTTCACTTCATATAACATAAAAATATTATAACTCGTTGTAAAACAGTTTGCTATGCAATGTAT # Right flank : GAACAACGTTCAATAGAAGTGTGTTACGGAGTTGGGAAACAAAAGTTCATAGGAATGCTTTCATGACAATATTTTGTAAACTTGTGCTTGTTAGTTGAACTCACTGAACCAACATATTCTTTTAAACGTTAATAAGGTTTAAATACACCTGTTGGCTAAGATAAAATTTGGTAGTTTCAAAAAAAAGTACTACCTTTGCACTCGCAATTCAGAGATAACACAACATCTTAATTACAATTGCATGGTTAATATCGCGGGTTGGAGCAGTTGGTAGCTCGCCAGGCTCATAACCTGGAGGTCGCATGTTCGAGTCCTGCACCCGCAACAAGTTTCAATAAGTCGCTCATTTTTGAGCGACTTATGTGCGTTTATAAGATAGAATTATTCATGATAATTTTGTCTCAGCGGATTTTTCCAGTTGGCAAAGCGCAGTATTGAACATAAAGTTCATACCTTTGCAGTATGAAATCAGACGCATTATTACGGCTCAGTAGGAAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATGTAGAATGCGCAAAAGAAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //