Array 1 490220-490967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPO010000001.1 Pseudomonas cichorii strain LCYJ12 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 490220 28 100.0 32 ............................ GCAGTAACCGAAGAGCGCGGCTTTAGCGCGCC 490280 28 100.0 32 ............................ TTCTTGTCCTCATGATTTGCAGGGATGTCATC 490340 28 100.0 32 ............................ AGAAAAGTTGGCAGTTTGATTGCCGGAATGCG 490400 28 100.0 32 ............................ TCGGTCATGATCCCCGAAGCGACGTAGTTGAT 490460 28 100.0 32 ............................ AGCGAGCGAGGCCCCAACAAGGGCCAGGAGCG 490520 28 100.0 32 ............................ AAGCGCTTGGGGACCGCATTCAAGGCCATGGC 490580 28 100.0 32 ............................ GCCGCAAGCTCGCCGCGCTGGCCAGCCTCTTC 490640 28 100.0 32 ............................ CGGATGCGCTGACAGAAACCCTTGAACTCATC 490700 28 96.4 32 .................C.......... CGCAGATTCAACGCCCTACCCGTTCAGCGAGC 490760 28 96.4 32 .................C.......... CACCAGCGGCGGTCCTGGTCTTCAAGGGGTAT 490820 28 96.4 32 .................C.......... TGCTGGCCGGTAAGCATGCTCGGGCGTGTGAG 490880 28 96.4 32 .................C.......... ATCTTGAAAGTCCATGCCGAATGTGTCGTCGG 490940 28 67.9 0 ...........CA....C..T.C.ATTC | ========== ====== ====== ====== ============================ ================================ ================== 13 28 96.4 32 CTTCACTGCCGTGTAGGTAGCTTAGAAA # Left flank : GCAAAAAACCTTGTTGACCAATGATATGCGCATCCCTATACTTCGCCGCCATTGAGCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCAAACAGCAAGACACCCAAGCGGTTGCAGAGCTTGGGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTGCAGGGGCTGTAGGAGCGAATTCATTCGCGAATCAGCATTCCAGGCAATACATGTCCTTTTAATGTACCGGCCTATCGCGACTGAAGTCGCTCCTACAGGTCCGGCGCCAAACCACGCCTTAACGCACCCTCTTTTCGACCCTCTTTTTTCAGACTCCGTCGCCCCCCCTTTAAAATCAATAACTTACGAAAACCACAAAAAAGAGGGTAAAACGGCCTCAGGTAGGTGGTTTCTCTTTAAAAACGGAGAGTTATTAGGCAAGGTGTCTA # Right flank : CCACTTCACAACTTTCAAATCCTACGTTCAGCCCACACTCGACCTACAACCACTTGCTCCTGATTACCCTACCCAAGCTGAACTTCCTCATTTAACCAACCCGGCCCTCAGACTACGCTTCCTGCCGTTCGCTACCAATTCAGCGACCGGGTTTGGCGACCCGACAAAGCTAAATCTCTCCCCATCGTGATGCCGGCGCTTTATCCTGTCGGCTCATCGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGCCTGCCGGGCTTGGAGATGGCTACCGGTTCGCCAACCCACACACAACTGCCACCCATTGTTTGGCGACAATTCGGGCAGTTCCATCAGCCATATCCGATGAATGAAAACCATGCAAAATTTCAGCAACAACCTTCCCTGCACATCCTCCTTCCAAGCCACCCTCTTCCTGCGCCACAGCCGCATGCTCCGCGCCATCTTCACCGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTTGCTCGCCTGATG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGTAGCTTAGAAA # Alternate repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 516257-516944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPO010000001.1 Pseudomonas cichorii strain LCYJ12 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 516257 28 100.0 32 ............................ TTACCGGCTGATATGGCCGAACACGTCAAGTT 516317 28 100.0 32 ............................ TTCTCTCCCTGCTGCGCACTCCCCCCCTTACC 516377 28 100.0 32 ............................ ATGTTGTCGACGCTGGCGGTGGCCAGCTCGGC 516437 28 100.0 32 ............................ AGTGCCGGTAACTTGACTTGAACCGCATCCTG 516497 28 100.0 32 ............................ CACCCACGGCGGCACTTCCGGGTAAACCTCTC 516557 28 100.0 32 ............................ ACGTCAACATGACGCAACCGAGCCCCCTTCGG 516617 28 100.0 32 ............................ AACGCCGAGATCAATCAGGCCATTCGCGGCAC 516677 28 100.0 32 ............................ AAGTACACATCAGCCCAGCTCGACGACATGTT 516737 28 100.0 32 ............................ ATTCAAGGATCGCGGCTTTAATTCGGCCTGGC 516797 28 100.0 32 ............................ ATATCGCCATCTTCCCAGTAATAGAAATCCAC 516857 28 85.7 32 ...........CA..A......C..... TACGACCCGGTCATTAATGGTCATCTGCTCTC 516917 28 67.9 0 A..A.......AAC........C.C.CC | ========== ====== ====== ====== ============================ ================================ ================== 12 28 96.1 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CCCTCGAAATGCGCATGCAGCGTCTCGATACCGGTATCGCGGTCCTGAGCAAGATTGATCCAGTTGCTCTGAGTCATGGCAGGCTTATGGGCAAACAAGGGGATAGAGAAGCGTGTTATCGCGCATGGGGAATGGGAAGTCTAGAAGGTTTGTGCAGGGTGCCTTCAAGGCCTTTCGCGAATGAGTTGGCTTGTGTGGGAGCGACTTCAGTCGCGAAAGCAGTGCTTCAAGCGATGTAACTCTATCGGATGTACTCCCGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATGCGTACCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTCTTTTTTTTCACCCAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGGAGAGTGTCTA # Right flank : CCCCAATAACCCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGCTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCGGCACGCCGTTGTTCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 526535-525607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPO010000001.1 Pseudomonas cichorii strain LCYJ12 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 526534 28 100.0 32 ............................ CATAGGATCACCGATGTTGTTAAAGTCGCTGC 526474 28 100.0 32 ............................ TATCGGCGTCAACCCTTTGCTTTTGGCTGATC 526414 28 100.0 32 ............................ GGAGCGGAAGTCTTCGACCGTAGGTTTCGCAA 526354 28 100.0 32 ............................ TCGGCGTGCACGGGCCTCAGTGTTCAGGAAGC 526294 28 100.0 32 ............................ ATCGTCCTTGTCATGTAAGCCGGAGGTGTTCG 526234 28 100.0 32 ............................ CCATCGCGGCGCTCTACCTCCCACTTACCTTC 526174 28 100.0 32 ............................ TATGCGCCGTGCAATGGTATCGGCCAAGGTAT 526114 28 100.0 32 ............................ TGGGGCTGGCGTCTGGACCAGGGGGAGCGACA 526054 28 100.0 32 ............................ ATTGCCCGCGAACGAGAATTTCGCCGCATCCA 525994 28 100.0 32 ............................ AGCGAGCAATGCAGCGGTGTAAGCAGGCGAAT 525934 28 100.0 32 ............................ ACTCCGGCCTTGTGATGTTGCGCACCAGAAAC 525874 28 100.0 32 ............................ ATCATGGCGTCAGACATAAAAACGCCCGCCTC 525814 28 100.0 32 ............................ CTTGCGAGGACAGGTTTTTGCGCTCCTGATGC 525754 28 96.4 31 ............G............... CTACGGGCGTTAAGACCCGGATAAATCGCAC 525695 28 89.3 31 ...........C.C.......C...... GATCACTTGAGCATTGAGCAAAGCACTGAGC C [525669] 525635 28 89.3 0 ........T......A........A... | A [525622] ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.4 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCCGACTGATTGGGTGGGATTTATCCGCGAGACGTCATTTCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCACACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAAGCCGTCATGTCGCAATTTCCGGTTTCTAGCGACATGTTATGAGGTCATGTCGCTGGCGACGACATATCAAAAAGTACGGCGCTGTCTTGCTGCGGGTGAGCACCTGTATACGGCGGACAGGAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGTTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : AACAAAGCCCTTGTAGCTAGCTCACCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCCTCCGTTAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCATGCAAGCGCAGGAGGTTGCCCAGGCCGGTAGCCCTGTCGCTGATAGCGGGGAAGCTGATG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //