Array 1 525-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQK01000035.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1564d x_contig000035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 524 30 96.7 37 ....A......................... CTTGTGCCAAAAGAAGAGCAAGAGCAAATGAGCTTTG 457 30 100.0 36 .............................. TGTGGCAGTATGCTTTTGATTATTATTGCAAAAATA 391 30 96.7 36 .......T...................... TTCTTCACGTTTAGCCCTTGCGTCTTCTAAAGCCTT 325 30 100.0 36 .............................. AGTAAATTGCCTATCATTTCTTAACTTTCCTTTACT 259 30 100.0 35 .............................. GACAAATATTTAGAGAAAAAGGATGGGGATGAACT 194 30 100.0 37 .............................. TTCTTGCAAAATTGGTTACCAGGCATTGTTTCAAGCA 127 30 100.0 36 .............................. CTTGCCCTTTTGAAAAGGATTCCTAATGCCAACCTA 61 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 99.2 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GTGTGAGCTATTAGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGGTAAGCTACAAATCCTAAAAATGTGAATTTTCTATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGTATCAGTTTTACCAGTGTAAGGCTTTGAGTAGCTAAAATCAAAATGACAATAAAATTTTATTAAAGCAAAAACCAAAACCATAATAATAAAACTAAACATTTACAAGCCTTTTTTAAAAAGTATAACATAAAGGATTAAATATGGCAAATCCTACTCTAACCTTTGGAGTTGATTTAAGTGAGTTTAATAGTGCTTTTAATAAGATCAACAAAACAGCCACTACCCTAAGCGATGTTTTGGATAAAAATATCAAAACAGCTACAACAGCGATAAAAAATGCAAATCACAAAA # Right flank : CAAGAGAAGAGTTCATCTCAAGTGTTCTGTTC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 50-861 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQK01000047.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1564d x_contig000047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 50 30 100.0 36 .............................. TTTTACAACAAGGCAGGAAAGAGGTAGAGGCTCAAC 116 30 100.0 36 .............................. AGATGGCAAAAATGAGATAAATAGCCATTACGAAAA 182 30 100.0 36 .............................. TTTTATTTGAGATTGTCTCTCTTTATTTTGATAGTG 248 30 100.0 35 .............................. CCAAAAGAGCCTTGAACATTATTTACAACAGAATC 313 30 100.0 35 .............................. TTTAAGCTTCATATATTTCACAACTTCTTGTTTTT 378 30 100.0 34 .............................. GAAACGGCATTTTATGGGTAGATTATACCATAAA 442 30 100.0 34 .............................. TTTTGCGCTTGTGAAATTGCCCAATTATTCCGTT 506 30 100.0 36 .............................. TCTATCATTTTTTAGCTCTCTATCAAATACAAAACA 572 30 100.0 34 .............................. CTTTCAAATATCCTTTTTAAGGGTATTTGAAAAA 636 30 100.0 35 .............................. GTCTATCTGCTCAGTTGTAGGCGTTTTGCCTAAAA 701 30 100.0 35 .............................. CTCTATGGTATTCACCTGCCTTTTTAAAGCTTCTT 766 30 100.0 36 .............................. TAAACTCTTCTCTTTGGCTCATTTATTATCCCCTAT 832 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 100.0 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GGATAAATTTATACGATAGATCCACTTATGCGGTATCAATATACTATGAG # Right flank : CCACCAAATAGCCCTGAGTATCTCTCAGCAGTGGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 16636-13404 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQK01000023.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1564d x_contig000023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 16635 30 100.0 35 .............................. GTAGCAACTCTGGAACGTTCATCATTTCAAGTAGC 16570 30 100.0 34 .............................. CACAAACTTATCTAAAATAAAATCATTCGAGGGA 16506 30 100.0 37 .............................. AAATTCGGTTGTGTTTTTGGTCCTACAAATACTCCTA 16439 30 100.0 37 .............................. CAAATTCCGCTACGCTCATTCCTTTTTTGATGAAATG 16372 30 100.0 34 .............................. TTTGAAAAAATCGAAGTTTTAAAACTATTCTTTT 16308 30 100.0 35 .............................. TAAGGGCGTGAGAATTGTAGCGGTTCCAGAGATGA 16243 30 100.0 35 .............................. GGCGTTTTAGCTGGTAGCAGTGCGACCCTTACTTT 16178 30 100.0 33 .............................. TTTGGCAAAAATATCATCAAATCAGGAAAACCT 16115 30 100.0 34 .............................. TACTAACCCCTACACTTCTTGGGGGGGGTACGAG 16051 30 100.0 35 .............................. ATAGTAATATCGACGGCTTTAAGGCAGGGTTGGAA 15986 30 100.0 36 .............................. AACATGGATGGAGTGCTGCAAAACAAAAAAATATCA 15920 30 100.0 34 .............................. GATATACAAAATCCGCGACATATTTAATAGCCCT 15856 30 100.0 34 .............................. ATAAATTTGGTGGCTATCAATACAGAAGTTGCGA 15792 30 100.0 35 .............................. TATTCAATATGACCTTTAGCTATGTAGTTTTTACT 15727 30 100.0 35 .............................. TATTCAATATGACCTTTAGCTATGTAGTTTTTACT 15662 30 100.0 35 .............................. AAAATGTTGCCGTCGTGCTTCCGCTAGCAGGTATC 15597 30 100.0 36 .............................. CGCTAACTCCTCTTTCTGAAACGCTTGGAATACCTA 15531 30 100.0 39 .............................. TATTTAAAATAGTTTTCGGGTTGTTGCATACTTTGGATT 15462 30 100.0 34 .............................. ACTAGGCTTTGTTTGCTTGGTGGCGTGTATGTAG 15398 30 100.0 36 .............................. TGTTTGCTATTTCCTCCTTTTGGTCATAAGAGTAGC 15332 30 100.0 36 .............................. GTAAATTAAAAGAGTTAAATAAAGAGCTTAATATTG 15266 30 100.0 37 .............................. TTTGTATTAGTGGCATTGCTATCTTGCTCTGATATAT 15199 30 100.0 36 .............................. TCCTTATTTAGTGGCGTTCCATTGCAAAGCTCTTTA 15133 30 100.0 37 .............................. TACTCCCTTTTTTCATACCACTCCTCATTGCCAAATT 15066 30 100.0 36 .............................. CGTAATTTGCACAACCCCTAGTAAAGCCTAAACGCC 15000 30 100.0 34 .............................. ATAGGTATCCAGTCCGTATGCTCCGCCTTGTTTC 14936 30 100.0 34 .............................. TTGATGTAGGATCTGTTAAACTTAAAGGAATTGC 14872 30 100.0 35 .............................. TTTGTCCGTGGTCTAGTAGCTGGTTTTTTACCCAT 14807 30 100.0 35 .............................. GCCGAAGTTGATACGACAATTATGACACAGTATCA 14742 30 100.0 34 .............................. AAAATTCATTCAACATTTTTTCCCTTTAAATTTG 14678 30 100.0 36 .............................. TAGGTTGGCATTAGGAATCCTTTTCAAAAGGGCAAG 14612 30 100.0 34 .............................. TAGCGTAAATGTCGAAGTTATAAACGAGTGCTTA 14548 30 100.0 35 .............................. TACCTTTGGCGGTGGCTATGGGATAAGCCCTATTG 14483 30 100.0 36 .............................. CTGCTGAACAGAACACTTGAGATGAACTCTTCTCTT 14417 30 100.0 36 .............................. TAGGTTGGCATTAGGAATCCTTTTCAAAAGGGCAAG 14351 30 100.0 36 .............................. AGTAAAGGAAAGTTAAGAAATGATAGGCAATTTACT 14285 30 100.0 35 .............................. TATCCCCATTTTTTGATAAGTTTGGTAATGCAGGT 14220 30 100.0 37 .............................. TACTGGAGCAAGGGCTGGAGAGGTACTTGGCTTAAAA 14153 30 100.0 37 .............................. CAAAGGAATATCACAAATAGACCCTGTTTGGATTACG 14086 30 100.0 35 .............................. ATAAGGTAATTCCACTTGATGACGGCTATTTAAAA 14021 30 100.0 36 .............................. TATTTTGTGTTTGATAGAGAGCTAAAAAATGATAGA 13955 30 100.0 34 .............................. CCCTGAGCCAATTAACAAGCTTGATTTGCTCTTG 13891 30 96.7 36 ......................A....... TATTTTTGCAATAATAATCAAAAGCATACTGCCACA 13825 30 100.0 33 .............................. ATTTGATTTCATCTCGCAATATAATAGCATCGC 13762 30 100.0 37 .............................. TTTTTCATCATTTTTATGATTTTTTTGTGATTGACTA 13695 30 100.0 35 .............................. TTTCATCTACCAGCACCAAACTATAAATAAGCAAA 13630 30 100.0 35 .............................. CCATCATTTCTATGGTCTTTTTTAAAAACGCAATT 13565 30 100.0 37 .............................. TCTGAAAGTCCTTTTTTTGTTCTTATTTCAACCATCA 13498 30 100.0 35 .............................. AAAAATATCTTTGCAAGTTTGGCAAAGAGAGGCAG 13433 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 50 30 99.9 35 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : TCTGCTCAGACAAGGGGTGATAAAACTGCATTTAACATACTTAAATATGCAAAAAACGACCAAAATATAGCCATAACTCAAAATGAATACTGGATAAAAAAGCATAGAAAGATAGATGAAAAAGTATTTTTAAGAAAAGATGTAAAATCCAAAGCAAACTGCGTGGCTTGCCACAAAGAAATAGAAAATGGTATAATCGGCTTGATAGACTATGAAAAAATAAAATAATTTGCAAGTGTTTAGCGAGTTTAAAATTTGCCTTATAGCTATTTTTATTTTGATTTAATATGGTTAAGTTAGATTTATTTATGGATCAACTTTTGCCCAAATACTTAAGAAAAAATTGCTTTAAATAACTTGATAAAGCTATATTTAAGATTTATAAAATAGCTTAAATGCTTTATTTGATGATTTTATAAATACTATATTAAGCCATTTTTTAGTAAAATAAATATAGTAAAACTTGGTACAAAGTACTAAATTTAGCTGTTTTTGTTGCT # Right flank : TAGGGCTATATTTTGCGTATAGTTTTACCATAATTTTTATAGCTAAATTTAATCGGTTTTAATAGTGCTTTAAAATCTTTGATTTTATATAAAATAAGCAAATAATAATTGCAAAAAAGCCGATTGATTTAATTCACACCAAGGACTAAATTTGATACTTTGTGATACAAATTACCCTAGTATTTTAGATGATATATGTGATGAGCTTACTAAAGCAGAGATTGAGCTTGTATTTGTTAGTAGTGATGAAATGCAAGAGATAAATAAAAAAGAGAGAAATATAGATAAAACTACAGATGTGCTTAGCTTTCCACTTGAGTATGTACCTCATTTCCCTATTGGATCTATTGTTATAAACAGTGATTTAGCTAGTTCAAAATCAAAAGAGCTAGGGCATAAAGTAGAAGATGAGATAGCTTTATTATTTACTCACGGACTGCTTCACGTATTAGGATTTGATCACGAGAATGATGATGGAGAGATGAGAAGAAGAGAGATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //