Array 1 183848-185888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVR010000008.1 Erwinia amylovora strain Ea29-7 Ea29-7_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183848 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 183909 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 183970 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 184031 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 184092 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 184153 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 184214 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 184275 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 184336 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 184397 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 184458 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 184519 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 184580 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 184641 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 184702 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 184763 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 184824 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 184885 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 184946 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 185007 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 185068 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 185129 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 185190 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 185251 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 185312 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 185373 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 185434 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 185495 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 185556 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 185617 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 185678 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 185739 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 185800 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 185861 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 196796-198412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVR010000008.1 Erwinia amylovora strain Ea29-7 Ea29-7_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 196796 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 196857 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 196918 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 196979 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 197040 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 197101 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 197162 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 197224 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 197285 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 197346 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 197407 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 197468 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 197529 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 197590 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 197651 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 197712 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 197773 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 197835 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 197896 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 197957 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 198018 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 198079 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 198140 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 198201 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 198262 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 198323 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 198384 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 207876-208204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVR010000008.1 Erwinia amylovora strain Ea29-7 Ea29-7_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 207876 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 207936 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 207996 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 208056 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 208116 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 208177 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //