Array 1 45995-44234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUV010000010.1 Anoxybacillus flavithermus strain WS5287 10_53850_25.9598, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 45994 30 100.0 36 .............................. CGGTTGTATCGGCTGGTTTCGGATAGCCGGTCGATA 45928 30 100.0 39 .............................. CCCTTTCGACCGACAGGCTTGTCCATGTCACTGTCCTTG 45859 30 100.0 36 .............................. TGCGGAACATAAGGCATGTTGAACGTGACCATATGA 45793 30 100.0 36 .............................. CCTAAAGAGTCTTCACCTTTTAAAAAGACAGAGGAT 45727 30 100.0 38 .............................. CTACGCTTGTCCAGCCAATCATTCAACGTTTTACTAAT 45659 30 100.0 36 .............................. AGACCCTTCTGTGACGGCTTCGGACGATTGTTCAAC 45593 30 100.0 35 .............................. ATGCTTCTCTAAAAGCACCCAAGTCCTCTTTTTTT 45528 30 100.0 37 .............................. TGGGGAGAGCCCCACACCCCCCTTCCGCTCGCCGCTA 45461 30 100.0 36 .............................. GACAACGTTTGTCGCGACATATATTTGGTAGGAATG 45395 30 100.0 35 .............................. CGTGGACTGGTTTCAAGCCACTTTCAAAAGTGTAA 45330 30 100.0 36 .............................. ACATCCTACATCCTCCTTGATTTCATCCGCTTCTAA 45264 30 100.0 35 .............................. CTTTTCAATCGCAAGAAAATCATCACAAATTACTT 45199 30 100.0 35 .............................. TACGAGTATGAAAAAGAGATCAGAACAGGCAAGGA 45134 30 100.0 37 .............................. CTCCTATCGACGCAAACCATGGTGGAGACGGAATTTG 45067 30 100.0 37 .............................. ACCTGGAGCCTGATAAACTTCTTCATTCATAACATCA 45000 30 100.0 38 .............................. ATGTATATTCCTGACGAGTTTTTGATGGGTTCTAACGG 44932 30 100.0 35 .............................. CTAGTGTAGGGGCAAAGGCTGATGGGGGTTATGCG 44867 30 100.0 36 .............................. GTCCGTCAAAATCAACATCCCATTCGTCCCATCCCC 44801 30 100.0 35 .............................. AGCATAAAATACCACACATGTGTCTACATGTCAAC 44736 30 100.0 38 .............................. TGCGAAAAATGGGCGCCCATTCAATGAATACGGTCTAA 44668 30 100.0 40 .............................. TTGGCGATGGGATTTTTGAATAGAAATGTGTCCGCATTCT 44598 30 100.0 38 .............................. ATCTTGCGCTAGATGATTTTGTGGGATTTTTTACGCTG 44530 30 100.0 36 .............................. TTCTGCTATCTCGTTTGGAAAAGTAACAGCTACGGA 44464 30 100.0 38 .............................. AAAGCGCGTTTTCAATTTATTGAAATTACGCGCTTTTA 44396 30 100.0 37 .............................. TATGAACAAGCATAGGCATGTGTCATTTGTAAACATA 44329 30 100.0 36 .............................. TTAATGGTAACTTTAGTTTATATGTATGTGTTATAC 44263 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 27 30 100.0 37 ATTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TATTGTTTGGCTTTTTTGAAACATATGTGAAATTATCAGACGAAGAAGAACGAAGACTGCGAAGCGAGGTGAATGAAATGGAGACGAAAGAAAAAGAACAAGTGATGGAGTTGATTATTTCGTATGAACAAAAGGCGTTGGAAAAGGGAAGAGAAGAAGGGATAGAACAAGGAATCAAACAAGGAATCAAACAAGGGATGAAGCACCTTGTACAAACGATGGCCAAAAAAGGGATGAGTGTAGAAGATATCGCAAACATCACAGACCTTGCGGAAGATGAAGTGCGTGAGTTGTTAGAAAAGGAATAAGTAATTTGCGCATAATTTCACAACCGTCGTCGACCTCCAATCTTGCAAAAACCCCAGGGGATCGACGACAATTTGTTTTTTGCAACTTTTTTAGACGTATCAACGCATCAAGACGATTGACAGAATTTTCGAATGTATGTATAATGACATTGTATAGCTTTTCCAAGTATTGATTTATCAGCACTTTTTGGG # Right flank : ACCTTTGTAAAAATTCTTCAATTACTTGAGCTTTTTCGTTTGGTTTGTATCGTACCTACAAGAACCAGTATGTTAGGGTCTGGATTTTTTTGTATATACCATTTTACTTTTTCTTTAACATTTGTTATAATATAAGGTAGAGAACATCTTTCTTTCCGATTATGGTAAAGTGAGATGTTTTTTTCGTGGAAATATTGATTTCACAAAGAAATGGAGGGATTTCTGATGAAGAAATACGCCATTGTGTATTGTGAACATCAATTTGGTTCCATGGATGGAAAAACAGCGAATGGGCTTGTGCGCGATTCAGGGCTGTATGAGATCGTTGCAGTCATTGATTCGACAAAAGCTGGTCAAGATGCCGGAGAGGTGCTTGATCAAAAGAAAAATGGCATTCCGATTTGTAAAAACCTTCAAGATGCAATAGCCTCCGCAAAAGAAAAACCGAACTACTTCATCTTAGGAATTGCTCCAGCGAACGCTTTTCTCAAAAAAGAAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6082-6642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUV010000001.1 Anoxybacillus flavithermus strain WS5287 1_138621_26.8837, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6082 30 100.0 36 .............................. AATCAAGAAGGAATTGAAAATCGGAAGTGTCAAATG 6148 30 100.0 36 .............................. TTGCACCTCTTGAACGCTCACTTTTTTCAAGCCCTC 6214 30 100.0 36 .............................. AACATACATTTGATGAGGCAGAGGAATGGTTTAAAG 6280 30 100.0 37 .............................. TTCTTCATCAGCATTTTATAATCAAATTTTCCTGCAA 6347 30 100.0 36 .............................. AGTAAAAGGAGGCGGTCATGACGTGTTCCGTACTTT 6413 30 100.0 36 .............................. CAGACATGATGAAAGATGAAATACGCAATCAGCACG 6479 30 100.0 38 .............................. AAAATGAATCCTTTTACATTTGATACGTCTGATTTTCA 6547 30 100.0 36 .............................. GTGGCATATAGTATAGCTTATATCGCGCTATTTCTA 6613 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 100.0 36 GTTTATTGATAAGATATGATGATTTGAAAC # Left flank : GGAGGGTTTAATGCTCAATACACTCGATGGCAAATATCAATGTAAACGCACAGATGTGTTATTGAAAATTAAGTCTATGAATACGATGGATTGCCGTATTATTGGGTTTGAGGAAGGTACAGGAAAGTATGAAGGTATGTTAGGTGCATTACTTTTAGATTATAAAGGCTATGAGCTTCGCTGCGGTTCGGGATTTACAGATGAAGATCGCAAAGAAATATGGAACAATAAAGAAAAATATTTAGGTAAGATTGCAGAAATTCAATATTTCCGTGAATCACGCAATCAAGACGGAGGATTAAGTGTATCTTTCCCAGTGTTTATTTGCATTAGACATGATAAAGATGAACCAAGTTATTATTAATAAAAATATAAAAAATAGGTTGACATTAGATTTGGATGGTAGTAAGATAAGATTAATAAAGGTTTTAGTAGGTAAACAATAATTATTGTCAATTTTTTAGTGAATTAAAAACGTTGGTATTTCAATGATTTTTGGG # Right flank : CCAATTTGACAAGGAGATTGTAATTAATATATAATGTTTTAAAATAATTGTAAAAGAGGTGTATAAAATGAAAATTATTGCTGTTGAGGTAAAATCAAACTTTGCACATTTTGGTACAATAAATTCTAATCATAGTACAAAATTAACATACTCTATGCCAACTAGAACAAATTTATTAGGTATGTTCGGAGCAATCATGGGATTAAATTATTGTGACGTTATTGAAAAATGGGATCATAAAATTAATTTTGCATGGAAATGGTTAAGTGAAAATGAAACGTCTGTTATTATGGTTAATCGACACAAAATAAAAGAAAATCCTTGCTATTTTAATATGATTAAAAGTAAAAATAAGAAGCCCTTATCCGACAGTCCATTTGATCAAACGTTAGATTCGATTGAATATTTAAAAGGTAAAAATGGATTGTTAAAAGGAAAATGGTTTATTATTGTTGATGAACAATATCATAATGAAGTGTTAAAGGCTTTAAAATCGCCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATTGATAAGATATGATGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 22359-26203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUV010000024.1 Anoxybacillus flavithermus strain WS5287 24_33378_29.289, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 22359 37 100.0 34 ..................................... CTATTACCCTCGCAAGAAAAACGTCTTATGGGGC 22430 37 100.0 35 ..................................... TTTTGCAGGTCGGCCAACACCTCGGCGATGCTTGT 22502 37 100.0 36 ..................................... TTTGAAAAGCCATTTTTCACAGAACCCCAAAGATCC 22575 37 100.0 35 ..................................... TGAATCAGTCGGAATGTCACCACTCAAATATTCAA 22647 37 100.0 35 ..................................... AACCGCTAAAAGGTTACGAACATTCTAACGCTACC 22719 37 100.0 34 ..................................... CAAAAATTTTGTGCGTATCAAACAATTGAGCGAA 22790 37 100.0 34 ..................................... ATCGCATCACCTTAATAATCACTAAGAAAAAAAG 22861 37 100.0 33 ..................................... ATGAAATTGCGTCGTTGTATTCTTCGCCATTTG 22931 37 100.0 34 ..................................... AGAAATGGGTCTATCGTTTTTCGACTCCGGAAAG 23002 37 100.0 37 ..................................... GAACAGCACAATTGTAAATTCAAAAGCGCGACAGAAG 23076 37 100.0 35 ..................................... AAGTCCTTCCCGCTTCCCTCTTCGACCCACAGGCT 23148 37 100.0 33 ..................................... AGCAATTGCGCGTCTATCTTGCTCTCTAACCCC 23218 37 100.0 32 ..................................... AGCAATTGCGCGTCTATCTTGCTCTCTAACCC 23287 37 100.0 35 ..................................... ATGTACTTGTTTTTCCACTGCTGATCTCAACGCCT 23359 37 100.0 37 ..................................... TAAACGCTACCTAAAAGATAAAGAATATCGCAAACAA 23433 37 100.0 34 ..................................... AATGATGATCTGTTAGACTGGGGCTATCTTCCTG 23504 37 100.0 37 ..................................... TAAACGCTACCTAAAAGATAAAGAATATCGCAAACAA 23578 37 100.0 33 ..................................... AATTCCTGCCGCACTACATCACGAACTACTTCA 23648 37 100.0 35 ..................................... ATAAAAGATGAAATTAATAAAGTAAAGACGGTTTT 23720 37 100.0 38 ..................................... TCGCGCTCAAATACGCATGTATGACAAGCGCGCGCAAA 23795 37 100.0 35 ..................................... AAGTCCTTCCCGCTTCCCTCTTCGACCCACAGGCT 23867 37 100.0 34 ..................................... CCCTCTTAATCTCTCGTCATCGTTATCTTTTGTC 23938 37 100.0 33 ..................................... TTGTACTCCGCCAACTTGTGCATGTTCTCATCC 24008 37 100.0 32 ..................................... GCAGTTGCGCATCTATTTTACTTTCCAACCCT 24077 37 100.0 33 ..................................... GTTCCGCCCTTGACACTGGGACCCTGCTCCCTT 24147 37 100.0 35 ..................................... ACATGTCGAACGTGGAATATATTTGTGCGACTCCC 24219 37 100.0 35 ..................................... ATATTACATAGAGAATATTTTAGATGATATTAATG 24291 37 100.0 36 ..................................... ATCATAATCCCTCCCTTACATAAACATCATGCGGCA 24364 37 100.0 36 ..................................... ATCATAATCCCTCCCTTACATAAACATCATGCGGCA 24437 37 100.0 33 ..................................... ATTTTTTTCACAACCAAATTAACAGGTGCTGGG 24507 37 100.0 36 ..................................... CTAAAATCTATAAATCTCTTTAAACAAACCCAGAAC 24580 37 100.0 34 ..................................... CACCTTTGTATAGCGCGTTCTTTTGCAGTTTTGG 24651 37 100.0 36 ..................................... ATTGATAACTATGCGAACGACGGTGAGCTTGGCTAT 24724 37 100.0 35 ..................................... ATGTATATTCCTGACGAGTTTTTGATGGGTTCTAA 24796 37 100.0 36 ..................................... TTGGAAATGAAATTCCGATACGCTATAGGTTTTCTC 24869 37 100.0 35 ..................................... AGACAAAGACTTGAGTATCATTTGGGTTTGAAATT 24941 37 100.0 35 ..................................... TGTTGTTGCATATATTGCTCAATGGCAAGGAAAAC 25013 37 100.0 35 ..................................... ACCGTCGTAACCACCTTCATCGAGATCGAGAGAGA 25085 37 100.0 41 ..................................... AATAAGTCGCGGACAAAGCGTCAAGTCGGTACACAGTTGCA 25163 37 100.0 34 ..................................... CATATTTCTACCTCCATTCTTTTGAAAATCGACC 25234 37 100.0 33 ..................................... AGCAATTGCGCGTCTATCTTGCTCTCTAACCCC 25304 37 100.0 36 ..................................... TACTATATCAATACCAATGTTGCCGACAATGGAGGC 25377 37 100.0 34 ..................................... ACACAACACAAACCCATAGCCACACATCCACAAC 25448 37 100.0 36 ..................................... TTTCATTGTTGCTCCTGCTTGAATCGCATTGATAAG 25521 37 100.0 33 ..................................... ACTTTGGAGGAAATGTTCAAACTACGAGACTTC 25591 37 100.0 33 ..................................... TGGACAAACCGTTTATTTTGGCGACGCTTCTTC 25661 37 100.0 36 ..................................... GTTGAAAAATACGGAAGCTATATTCCAAATTCTTAT 25734 37 100.0 36 ..................................... GTTGAAAAATACGGAAGCTATATTCCAAATTCTTAT 25807 37 100.0 34 ..................................... ATAACAAGCCGAGCGCAGCCGATGATATCAAAAT 25878 37 100.0 38 ..................................... CAACGGTTTTCCTGTAGCGTTTGAAACAGTATTAAACA 25953 37 100.0 34 ..................................... CCTCTCCATGTCTGTCATAAGCTCCGACAGTAGA 26024 37 100.0 34 ..................................... CCTCTCCATGTCTGTCATAAGCTCCGACAGTAGA 26095 37 100.0 35 ..................................... ACCTACAAAAACTACAGTATTCGGCGTAAATAAAG 26167 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 54 37 100.0 35 GTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAAC # Left flank : TGACATATGATGTTGAGACATTGGAGTCAGATGGTCAAAAACGATTACGAAAAGTAGCAACTATTTGTCAAAATTTTGGACAACGTGTGCAAAAATCTGTTTTCGAGTGTAATGTCAGCCAAGCGCAGTTGGAAGAAATGGAACATCAATTGTTGAAAGTTATTGATCTAGAAAAAGATAGCTTACGAATATATACGTTATATGGTCAACGATCCAAAGCAGTTCGCTCCTATGGAAAGGACCATTACATTGATTATAATGATCCGATTATTTTGTAAGAGTAGAACATATACAATATGTGTAGCAGTTATGAATTTTGGTGCGCGAACATAAAGCAATAGTAAACAATCAGGAGGATCGCGATGAGTAAAAAAGGCTTAGTAAAGCGAAGATCCAAAAATTCATCAGAGACTATCTTTAGCCACAATGCACACCAGACAAAACAGTTCGCGTTTTTATACTTTTACACTTGCTTCACGCATAGGATTGAAGCGTAGGCA # Right flank : CTGCAGAAGGAAGTATTGCGTAATAACGTATGTGCTGAAACTGTCGTGCGCATGACGATGTTGATCGTGGAACAATTATCAAATAAGTACATGCAACTGTATAAACATAAACAATATGATCCCATTCGGCAAGGGGATTTGCTTGTACGGGAGTTAGAGGAATATGTGAATATTATAAAATATGGAATTTACAAGTAAAGGCGGGGCTTTTCCCGCCTCATTTATTTGTAAGAAAATTATTGAAATTTTCTGTTTTTATATGATATGATATTCTCAAGGAATTTGAAACTATGTTTCGTAATACGCAACAAAAAAGAAAGGGGAATAATGATGGGGGAATATGTACAAGTTGGACGTTTGCAAGTCGCTAAGTTGTTTTATGAATTTATCGTTGAAGAAGTATTGCCAAATAGCCAAGTAGATAAAGATAAATTTTGGAAAAACTTTGAGCAACTCATTAATGAGTTAACACCAAAAAATAAAGCGTTGCTTGCCAAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.80,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 9391-10757 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUV010000076.1 Anoxybacillus flavithermus strain WS5287 76_10910_23.1188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 9391 30 100.0 39 .............................. TATGCAACAACAGAAGGCTATTGACATGGCTGAAGGTTT 9460 30 100.0 37 .............................. TTGCATTTGACTAGACCCAAGCATCGGAGTTGGCAAA 9527 30 100.0 37 .............................. CGGAAACGCAAGCACATCAATAAGACGGGAGGACAAG 9594 30 100.0 37 .............................. AGAAGAAGTGCAAAAGTGTATTGCCAATCCCTCGATG 9661 30 100.0 36 .............................. CTACGCTTGTCCAGCCAATCATTCAACGTTTTACTA 9727 30 100.0 36 .............................. TGATAGCCCTGGGATCTTGCGGATGACATAGTCAAT 9793 30 100.0 36 .............................. TAATGATAATGAGATAATTTAAATGATGATCGTACT 9859 30 100.0 37 .............................. CAGCGATGGCGCAATGGGAACGCGAAAACCTTGCTGA 9926 30 100.0 36 .............................. CAAAATAATCGTGCTGTTTGTTTTATACACGCGTTT 9992 30 100.0 37 .............................. AACGGCTTCTGCATACCATCCTCGCTTCTTAACACAT 10059 30 100.0 36 .............................. TTTGGTGTCACAAGTGAGTACGAGGTCATCGAGCGC 10125 30 100.0 36 .............................. ATGATGATGAGCGTAATGTCACGATGACGATTGTGG 10191 30 100.0 35 .............................. ACAATCCAAACGATGCAGCAAAACTCAAATCAGAA 10256 30 100.0 38 .............................. TTGAAGAAGCGATTCGGTTTCTTTACTCCGAACGGTTA 10324 30 100.0 35 .............................. ACAATCCAAACGATGCAGCAAAACTCAAATCAGAA 10389 30 100.0 40 .............................. CCCAGACATTTCGATATGAAAGCCCATGTCCTCATGACCA 10459 30 100.0 38 .............................. TGTCGGGACAAATGCTACAAGAGAAGATGGCGACGCAA 10527 30 100.0 38 .............................. GCATCTAAATCATTAAAATCATTTAACGAATCTTCTGT 10595 30 100.0 37 .............................. AACGATGACTCACTAGATTTCTTAGAGGTCTTGCTAC 10662 30 100.0 36 .............................. GCTGTGTTCAATAAATAGTATAAGCTTTTACTTGGT 10728 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 21 30 100.0 37 GTCTGTATCGTACCTATGAGGAATTGAAAC # Left flank : AAACGGTGGATGGGAAGAAAAAAACACAATTTTTTGACCCGAGCGACGAAGTGTTTTCACATTTAATAGAACGGAATTTTTATAACAAATATGAAGCATATTACGGTGTTCCACCAAGCGATCGGCTACTCATCGAACCTGTTGATGTTCGAAAATGCGATCGGGTCGTAACGAGCTTTAAAGGCTTTTACATTACAGCGTGGAAAGGGCGGTATAAGCTCATTTCTTCTCCAGAGAATTTAACGTTTTTGTATCGTGTAGGTATCGGCGGACGAAACTCGCAAGGATTTGGTATGTTTCGTGTTGTATCGAGAAAGTGAAATAATTCACAACTGTCGTCGACCTCCAATCTTGCAAAAACTCCGGGGGATCGACGACAGTTTGTATTTTGCCACTCTTTCAGTTGTATCAACGGATATAGACTATTGACTGAATTTTCGAATGTATGTATAATGATATTGTATAGCTTTTCCATGTGTTGATTTATCAACACTTTTTGG # Right flank : AAAAGATCGCTAATCATGTTTTCGTCCTCCCTCTATAAATATTGATGTATCAAGGCTTTGCGGCCTCTCAGGGGTGTCAAAAAAATATTTTTCGACAAAATCCCTTACATCCTTTTTCAGTTTTGTGGATATCTTACAGACCTAGGGTGCGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 306-474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUV010000007.1 Anoxybacillus flavithermus strain WS5287 7_60084_30.6812, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 306 37 97.3 28 ..................................C.. TTTGATGCAAGAGAACCTTCAAACCCAA 371 37 100.0 30 ..................................... CGTTAATTTTAGCGTTTTGGGCTTCTGTTA 438 37 94.6 0 .................................G.T. | ========== ====== ====== ====== ===================================== ============================== ================== 3 37 97.3 30 AGTCTGTATCGTACCTATGAGGAATTGAAACAAATCT # Left flank : TGGCAACAGATTGACGGCATAGATTGACCATTTTGGCCACATCTTTACCGAGATGACCTTCCATGACAAGACGAACAGCGGTCACCCGAACGCGAAGGGAAGCATCTTTGATTTTCCGTTCTTGTTTTCGAAGGGTTCGAGGCGTCCAACCGTGATCATTTGTGATTTTCAAACGTTTCATGCCAATTCCGCTCCTTTTGTATAGAAATATTTAGGAGCAGTATAGCCATGAAAAAAGGTGTTCATACAGAAGTCATCGTTTTAAAGTGCATGTATATAGTTGAGCGCTAAAGCCCGACTAGCACA # Right flank : TTCAAGGAGCGTTTCTGTTAGAAAGGTTTTCAAAACATTTCTAGCGGGAGATGAAAGTTTTGCTCGTGCATAAAGCGTATAAGTTTCGCATTTACCCGAACAAAAAACAAGGGGTGTTGATTAATAAAACGTTCGGATGCTCACGCTTTGTGTTTAACCATTTTCTCACCAAATGGAACGACACATACGAAGAAACAGGAAAAGGGTTGTCCTATCACACATGTTCTGCACAATTGACCAAGTTGAAAAAAGAATATACTTGGCTTTATTTGAACGTAGTGGGATAAGCCCTCCCCCTTTCACTTAATTTTCACCATTGGCTAGTACATTTACTACATCGAAAAACGAATGCGTCATAAACGACAAAAGGTGTCCCACACAATCGGGACACCTTTTTGTTCATGAACCTTTTTTTCCTTTCTCGTGTTTATAACATTCGTGATATAGCTTCGTTAATGCGCGTTTTTCGATGCGGGAGACGTAGCTGCGAGAAATGCCGA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTGTATCGTACCTATGAGGAATTGAAACAAATCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 1707-1268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUV010000127.1 Anoxybacillus flavithermus strain WS5287 127_4957_139.714, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1706 30 100.0 39 .............................. TCAATTGAGATTGTGATAATTCCTTCTCCTTTTGTAGTT 1637 30 100.0 38 .............................. CTGACATTTTGGACACAATTAAGGAATCAATCGTGAAT 1569 30 100.0 39 .............................. GACCAAAAGGACGTGTGTAGTGCGTGAAGCGCAGAAAAA 1500 30 100.0 38 .............................. AGCGCAAATGGTTTCAATTTTATCGTTGATAACAATTT 1432 30 100.0 38 .............................. CATAAAGAAGTACTTGTGTTGGAAAGTGAGATTGCGAG 1364 30 100.0 37 .............................. TTGAATATTCCTGTGTTCCAACGTATGAACATAAATA 1297 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 100.0 38 GTCTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GGACAATTTCGGAAAGCGATAACCCTTTCTTTTCACGCAAATGTTTGATATGATGAATTTCAGGCATTGCTAGCATCCTTTCTTTACCTCCACTGTTTTGTTCTTCACAACCTTAACAGTAGAGGGAATTTTAGGAGCTGGCAAGCCTTTTTTTATGCCATGAAGCTCTGCACTTTTTTGTTGCAGAACTCTGTACTTTCATTTTGCACTAAACAAGAGAACATTTCGGGTACGTTTCGCGAAGAAATATTCGCCCAGTCGTTTTGCATCACAAGAAGCATCGTTTCCACACTGACGAAACACGAAAAAAACGTGTGGGATTCGTTATGTCTTCTGTTGACAGGCGAAACGCTCGATCGTGTTCTTTCTACCACTTAGGGCATTTTCTATTACGGGGATGCCCTATTTGTGTTGCGCTTCTTTACATACTACTATCGGAGTGAATAGTTACGAATTGAAACCTTCATCTTTCGCTTCTTTCAAATAGAAGCGGTACGCGA # Right flank : GACTTGTGCTATATACATCCAATTTAAAATTTTAACCTCTGGTTCACGCAGTACACCCGATGCGGCGCAACACCTCATCCGGGTGTTGTAGAACGTACTGTTCAAAGCGAGTAATGGATTGGGCAATGTCGTTTTGATCCTTGTGAAAAACGTTGGCAATCACCTCATCTTTCAACCACTTCCATAACCGTTCAATCGGGTTCAACTGTGGAGAATACGGTGGCAAAAAGATGAAATGAAAAGCAGCACCTTCCTCGCCATCAAGAAAGGCTTGTACCATCTTGGCATGATGAATACGCGCATTGTCTAACACAAGCACGAGGAATTGATCGGCATATTTCTCTTTCAATCGGCGCAAAAAGTCCAGGAACGTTTCGGCATTGGCGGATGATGCACGATGAAACACCACATCGCCTTGTTGAACATCGACGGCGCCAAAAATAGAAACGTGGGCATGGTGACCGTAGCTTGGCACTTGTTTTTGATTTCCTACTTCTGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 930-168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUV010000139.1 Anoxybacillus flavithermus strain WS5287 139_4008_17.9088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 929 30 100.0 37 .............................. TCCATTCCAGCCCTTCCTTCCGCTTTCCCTTTCGACC 862 30 100.0 39 .............................. TTTGCTAGCGGAGATCATGACGGACATGGAGAGGGAGTT 793 30 100.0 38 .............................. AATGAAATTCAACAAGAAAATCGCCATTGTGAGCTAAT 725 30 100.0 36 .............................. ATCCGAACCATACATGACATACTAACTACCTCCCTT 659 30 100.0 36 .............................. AGTCCTCCTTCTTCACAATCTCCTCCGCTGGCTTAA 593 30 100.0 37 .............................. AACTATGTATTGTGGAAAACAGGGTGCGGGTAAAACC 526 30 100.0 37 .............................. AAAAGATGAGTCTGTGATACTGGATAAATTAAAATCT 459 30 100.0 35 .............................. TCTAAATACGGAGTTGAATATGTATCACAATCTAA 394 30 100.0 36 .............................. TCCAAATACGTCGAGTGATGCACAAACGTGTTTTCG 328 30 100.0 35 .............................. TCGAGTGCGCAACGCTGTTCGGCAGGTGGACATTT 263 30 100.0 36 .............................. AAGCATCTCGCTATTGCTCCTATCGACGCAAACCAT 197 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 12 30 100.0 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GAAGCGATCGATGCAACAAAGCGCCCGCTCGTAATCGGAGGTGTATTCGTACTTATGCTTGCATCGATCATTTTCTCTCACCGCGCCAACACATATTTGCGCAAATTAGACAATGAACAGTAAATTCCCCTGTTTTCGTACAAAGAAAAAACATGTAAAATAAAAGAAAATGGGTAAAGGGGGAATAAACGATGATGTGGATGATTACAGGTCTAGTCATTACAGCTGTCATCGGTTTTGTTATTATCGCGGAAGTGAACGCCGAAGCATAAAACAGTCTCTAAACAGGAGACTGTTTTTAATAAAATTTATTTGTGATAAACTTCACAACTGTCGTCGACCTCCAATCGTGCAAAAACTTCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGCTGTATCAACGGACATAGACTATTGACTGAATTTTCAAATGTATGTATAATGATGTTGTATAGCTTTTCCATGTGTTGATATATCAACGCTTTTTTGGG # Right flank : CATGGAACGATTCGATATCATTTGTAAAACCGTCGCGGCGTTTGGTTTGAGTCAAGACTTTGTGGGAGATTTTTTTCTCGACCGATTTTTTTGGTTATATATGGTTTTATAAAATCGTTATATGTAAGCGCTTTTACTTACTCTCATCCTGTAGGTATGTGCGTTTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 135-368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUV010000161.1 Anoxybacillus flavithermus strain WS5287 161_2313_43.4181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 135 30 100.0 39 .............................. CGGAAAAACTTCGCGCTCTTTTTGTTCTTGAAGCTGTTT 204 30 100.0 36 .............................. ATAGAACGACGACTTCTTCATTTGCAAACAGAACAA 270 30 100.0 39 .............................. GATAGTATCGCTGTCTTAAACACTTCTCGTGGGTGTACA 339 30 93.3 0 ............................GT | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 98.3 38 GTCTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GTGTACAATTCATCTGAAGTCCTCCTTGGCATGAATTCAGGGTCCATTTGTTGGTTGACACCCCTGCATCATACCAAGAGGGCTTTTTTTGTTCAAGTCCTCGGAAAAGCTTCTAACAGGAATGCTCCTACATTG # Right flank : TAACTATTCAGCCACATCATAAAGTGAGCTGAATATTTTCGGTTCATCACCAAATTTTGTGATTTAGTGACAAAAAAGAGAAAGCACTGACGAGATCCTGGCAATAATGTTAGCGGTGAAATAAACATTAAGGAGGTCTCGTAAGTGCTTTCTATACCACTAGGATTGCCAGAATTTAAAGTGATTAAACAAGAACTTCTTTCCTATGGTTATGCGATTCATGTAGAGAAAACAGAGACACAGGAACGTTGCCCTCATTGTGGGTTTGCCACTTCCTCTGTCCACGACAGACGGACAAGAAAAGTACGGGATTTGGCGATTTTCCATCAACCGGTGTACTTGTTCGTCAAGGTAAAGCGCTATCGGTGCTGGAATTGTTCCCAAGTGTTTTCCGCCTCTTTGGAATCGATTCCACCCAATCAACACTACACCAATCGATTTTGTGAGTACTTGTATGAACTTTGCGAAGGCTCCACCATTCAAGAGGTTAGCCGAAAGCA # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 30325-30490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUV010000016.1 Anoxybacillus flavithermus strain WS5287 16_41037_27.817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 30325 30 100.0 39 .............................. AATTTCGATGAAAACGGTCAAATGTACATTGATTTCGAG 30394 30 100.0 37 .............................. ATATGATCGCGAATGGTCGTCCAGTCGGTGAACTTGC 30461 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 3 30 100.0 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : AATATCATTTTTCATAAGCTCCATTTCTCTTTTAGTACGTCTTGTCATATGTGCCATCTCCTTTGTATTTATTATAATTTTATTAATTGTTTTCTTATTTATAATTATAATGGTTATTATGTGTTTATGTCAATAAATTTATTATATTTTACATGAATAAAAAAAGCTAGTCGAGTGACTGGTACTGTATTATGGAGAAAATGGCTAGCGATATTTTGCGGTTGCTGTTATTGTGTTTGTTGGGATAGCAATTTAATAGGAAGCCTGTTATATGAGAAAAAAGTTAGCGATTGACTGAATGGCTTGTTATATAAAAAAATAAAAAGTAGCTACTTAGAGCTACTCTAATTTGAATGACAGTAACATTTAATCGCTCCAGATCGTTTTTATATGACGCTGTCAATGTCTTTGATATAACCGTAAAATATGCCGTTGCCTATGCTATCAGCTTGCTATGCCTTTTCGCGAGGAATATTCCGTGGGAAGTATCTTCGAGTGTC # Right flank : CAAAAATATAGAGCCGCTCGTTAGAGCCGCTCGTTAGACTTGTACTAGTTGAGCGCTAAAGCCCGACTAGTACAACAGGTTTAACGATTATAAAATTCTATTCTGTCTTGTAATAAATCATTATCTACGATGATCAATTCATCGTCCTCCCAATAAGCGGCAATTTTACCTCCTATCCCATCAGCAACGTCGATCGCTGCGTCGTAAATTAGCTCAGCGTCAAAATCAACATCCCATTCTTCCCATCCCCACAACGCCTCCCAAGAGTCGAAATCACCGCCTCGTAGGAAGTCATTAAGTAGCGCGCCATCGACCATGATGACTCCGTTTTTTACAATGATGGCATCATATGCACTTCCGCCCGCGATATAAACTGCATTAACCATTTCAATTTCCCCTTTCAGTTTTGTTTTTTTTAGAAAATATTGTTGTTTGTTTTATGATTACTCTTTCTGATTATTATTATACGGATGATTAAAGGATATGTCAACAATTATTTT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 132-4009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUV010000138.1 Anoxybacillus flavithermus strain WS5287 138_4136_5.34622, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 132 30 100.0 35 .............................. TTTTTTTGTCTAAAGGAGGTGAAGTATGCCACGAA 197 30 100.0 38 .............................. TTAAGCTTGTAGGCTGATAGTTTAACCTCATGCGAACA 265 30 100.0 35 .............................. TTTTTTTCGACCTTGGGTTGCTTCCAGATATGATA 330 30 100.0 40 .............................. TCCGATCGACAACGCGGGTACGCGGGTGTCTGATGTTCCA 400 30 100.0 38 .............................. CTATATCGAACGACTAGCCGAAATCAAGCGATACAACC 468 30 100.0 37 .............................. TTTTTCCGCGCTTGCTGAATTGCTTGCGACTGTCTCG 535 30 100.0 39 .............................. TAACCAAAGTTCGTGACAATGACAACGTCGGGATATTTA 604 30 100.0 36 .............................. AAAGAAAATTGTCCGAAAACGGATTGATATAAGTAA 670 30 100.0 39 .............................. ACTTTCTGTTTTCGTTGCTGTGTGATCTCCGCGAGCAGC 739 30 100.0 36 .............................. TTGAACAAGCTATACAGCGTTTATATGCTGAAACGA 805 30 100.0 35 .............................. TTAATAAAAATATAAAAATGTATTGACATATCCTT 870 30 100.0 35 .............................. TTAAAAAAGATGCTGATAATTTTGTTAGTCCGTCA 935 30 100.0 38 .............................. TAAAAGAAGAAATTAAAGAGGTAAAAACGGTCTTTCTG 1003 30 100.0 38 .............................. TGTAAATTTCTTAATCCAATTAGGATACCTATCCAACA 1071 30 100.0 39 .............................. ATCAATAAAATTGAGCATATAGGACTTATCGGTTACAGA 1140 30 100.0 37 .............................. GCACACATTCACCACAACACAAACCCATACATGAGCC 1207 30 100.0 38 .............................. TATAATCTACTTAAATAAAAAATGACTTTCGGCAAGAG 1275 30 100.0 37 .............................. TTTGACATCAATCCATAGAAACCCGAAAGTGTATTCC 1342 30 100.0 36 .............................. CCTCGTCAAGTATTAGAATATAGTTGCCTGCTTGTA 1408 30 100.0 41 .............................. ATTCTTGCTTCACGTTGAGTCTCAAAATTGTATTGAAGCAA 1479 30 100.0 38 .............................. TTCAAGTTACACCTCCTTTTATAGACATAATGGTACAT 1547 30 100.0 40 .............................. ACGTAATTTTCAACAATCTCCTTCATCCACGAATCATCTA 1617 30 100.0 39 .............................. TTGGTTTTCTCCGTTCATCCAGTTACCTCCTTTTTATTA 1686 30 100.0 37 .............................. TACGTATAACTCTACACACATGCGGTCAAATGCTCCC 1753 30 100.0 39 .............................. TTTCACAAGGAATTGCTTGTACAGCACTTCCTTTGCGTA 1822 30 100.0 37 .............................. ATGAAAAAAATGGCCATGATTTTAGCTGTCATCGCGG 1889 30 100.0 39 .............................. TAATAAACACATATAGTACACCTTCACACAACACAAACC 1958 30 100.0 36 .............................. GGTATATCCATTCCAGGACAAGTTTCAAAGGTTTTC 2024 30 100.0 38 .............................. TGAAGGATATGCGGACAGTCTAGTCTATGAAAATATCA 2092 30 100.0 36 .............................. TTCAGCACTCCAGCGGCAATCACACCGAACTCACAA 2158 30 100.0 36 .............................. AAATAAAACTGTTCAAGACTTGGAACATTCCATTGT 2224 30 100.0 35 .............................. CTGAAAAATTGTAAATTAAGCGCATTTTCTTGTAC 2289 30 100.0 37 .............................. ACGAGATGTCTGGATCATTAATATTGCTTGGATTGAG 2356 30 100.0 36 .............................. TTCAAAACATTAGACTTTAATTTATCCAGTATCACA 2422 30 100.0 38 .............................. ACCAAAACAAAAGGGGACGCATACGAAGCGCAGATTCG 2490 30 96.7 36 .......C...................... CAAGTAACAAAAATGGTGATAGTATAACAATCAGAA 2556 30 100.0 39 .............................. TCCCAAAACCATAAGCGTTAAATTCTCCAATTCCCATTC 2625 30 100.0 36 .............................. AACGCAGACGGAAGCGTGAATTGGAACGTCGATGAA 2691 30 100.0 35 .............................. AAAATCGTCTAATGCAAGATCGAGACGAGAAATAG 2756 30 100.0 39 .............................. TTTTGGTTTTCATGGCCTTTCTCGGGAATATAACTATGA 2825 30 100.0 35 .............................. CACGAATTTGAGCAAGTGACAATTCATAAATAAAA 2890 30 100.0 38 .............................. TTATATGTATTAGCTTTTCATAGTCAATTAATTGAGAA 2958 30 100.0 39 .............................. ACAGTCGAGGACTTGCAAGCGAAAACGCTAGAAGAACTT 3027 30 100.0 39 .............................. AAAAGCATTACTATGATGACATTGATTGACTAGCACCAG 3096 30 100.0 39 .............................. TCTAAAGAATTGAATTGATATAATAATTCTACTTGTATA 3165 30 100.0 37 .............................. TTAAAGAGTGTAAAATAAAGATGTAAGCATCAAAGAA 3232 30 100.0 39 .............................. TTGCTTGTGTGTTTTTACCTGCCCCATCCATTCCTTCGA 3301 30 100.0 39 .............................. AAATATTTCACCACAGCTTGTTCAGTGGAAAATTCATTT 3370 30 100.0 38 .............................. TGATGTATTCGATGATTTGCCCTTTTAATATCATCGCG 3438 30 100.0 37 .............................. GCGAATAGGATTGGAGCGCGATAGGTTCGGGTGTCCT 3505 30 100.0 38 .............................. TCTGTTTCCCCGATCGATCCATACTCATCGACATCTTG 3573 30 100.0 39 .............................. GAAGGCGGTGGCAAGGTTTCCCCTGCTTATGTTGATGAG 3642 30 100.0 39 .............................. TTGGAACGTTGGTGTAAACACTTCAGAAAGCCTAATCTG 3711 30 100.0 39 .............................. CCTCTACGTTTTCTGCTTCGATCATGCGCTTCGGTATTT 3780 30 100.0 38 .............................. GTGTTCAAGCACGCAACAACGAACATCTCCCTGTCTGC 3848 30 100.0 38 .............................. TTCACAAAAACTTTAGTCATAAATATTCTCCTACTTTC 3916 30 96.7 34 .............................T AATGGAATCACAATGTTGCCTCCTGCTAGATAAA 3980 30 80.0 0 A.......................A.CGTT | ========== ====== ====== ====== ============================== ========================================= ================== 58 30 99.5 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TCACACTTACTACCTTACCAGGAGGAGAGCCCGTTTTTCATCTATTTTGCTTACATATCTGACAGGTTCCTTATTATACCAAATCAGGAACCTGTCTTTTTTTCTCCCACAAACATTTTACTCATACCGGCG # Right flank : GTATGAGTAAAATGTTTGTGGGAGAAAAAAAGACAGGTTCCTGATTTGGTATAATAAGGAACCTGTCAGATATGTAAGCAAAATAGATGAAAAACGGGCTCTCCTCCTGGTAAGGTAGTAAGTGTGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //