Array 1 41453-41153 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081502.1 Streptococcus halichoeri strain Shali_VAS-CPH chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41452 36 100.0 30 .................................... AATCGCCCCCATAAGCTCGCTGTTATTGCT 41386 36 100.0 30 .................................... TCATGCTCTTGAGAAAAATCGTTATGTTTC 41320 36 100.0 30 .................................... CGTTCAAGCTTGGACGAGGTGATTCTGTAA 41254 36 100.0 30 .................................... GTTGTCAGCTAGTTATCAAGCTGGTATCGA 41188 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : CTAGCAGCAACTATAACAGAATTAATCGCCTTTGAATGTCTAGAGAACGAATTGGACTTGGAATATGACGAAATTACTATCTTGGAACTTATAAAGGCTTTAGGGGTTAAGGTGGAAACACAGAGTGATACTATTTTTGACAAGTGTTTGGAGATTTTACAAGTTTTCAAATACCTGTCTAAAAAGAAACTCTTAATTTTTGTGAATTGCGGCTCCTATCTTACCAAAGAAGAACTCTTGAAGCTGAGAGAATATATTGAATTATCTCAGCAAACGGTCCTCTTATTAGAGCCAAGAAGTTTGTATGATATTCCGCAATATGTTCTAGATGAAGACTATTTTTTGATAGCAGAAAACATGCCATAGTCTAGCTTCTAAAAACCTTGATTTCATAAGGCTTTTGCCGTATAATAGTGCTATGAACGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : CCAACCAATCTCAAGTTGATTATCTTTAATGTTTTAGAGCTATGAAAACTTTTTATTTATGATATAATTGTTTATGTGTTAATACGTGCTTTTTAAGCGCGTGTTTTTTTATTTTTAAAACATTTTCTGCGTATTTTAGCGCGCTTTTTCACCTGCAAGAGAAAAACCCTGACCATTTCTTTGGCCTGATAACAGAGGATTACCCCAACCTCAATCAAGCTTTCAAGACAGCCCTCCATACCCTTGTTCGCTACAAACCATATGTCACTAATGCCATCCTGCTGCCTTATTCGAACGCCAAACTTGAGGCGACAAACAAACTGATCAAAGATATTAAGCGCAATGCCTTTGGTTTTCGGAACTTTGAAAACTTTAAAACAAGAATTCTTATCGCTTTGAACATAGTAAAAGAGAAGACGAATTTCGTCTCCTCTCGCGCTTAGTTATAAGGTAAGCGTCCAATAACAAGGTGTATTGAAAACCTCCAAAGTTTCGAATTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 2 1978274-1977115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081502.1 Streptococcus halichoeri strain Shali_VAS-CPH chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1978273 36 100.0 31 .................................... CAAAGCTTTCTTGAGAAGAATAATGTTCATT 1978206 36 100.0 30 .................................... TAATCAATTTGATAAAGTGGCTACTGAGCT 1978140 36 100.0 30 .................................... GGAACAACAAGAAAAAACGCTTATCAGCAT 1978074 36 100.0 30 .................................... CATCACAGACGATTCTAGCCCGCCTTGGAT 1978008 36 100.0 30 .................................... AATTTTACGTAAGAAACGGTGATATTATAT 1977942 36 100.0 30 .................................... GGACATACGAGTGAAGCACATCGTGTGGCT 1977876 36 100.0 30 .................................... TGCAAACTTAGCAGAAGTAGCGGGCCAACT 1977810 36 100.0 30 .................................... CTTAAGCTTGATTATAGTATATCACCATTT 1977744 36 100.0 30 .................................... TACCAGCGAAATCGCGAGTATTAAAGCGAG 1977678 36 100.0 30 .................................... CTTAAGCTTGATTATAGTATATCACCATTT 1977612 36 100.0 30 .................................... GCTTCAACTAAAATTCCGTGAGTCATTTCG 1977546 36 100.0 30 .................................... AGCAGATTTAACGACAACTTGTCAACAAGC 1977480 36 100.0 30 .................................... GCGACTGTTGATTATCAGAACTTGCTATCG 1977414 36 100.0 30 .................................... ACAATGCAATGATTACCGCTGAATTCAGGG 1977348 36 100.0 30 .................................... ATACGGTTGGAAACATAATAGGCGCGGTGT 1977282 36 100.0 30 .................................... CTTGCTAATTCTCAATGGAACGGCTTGGTT 1977216 36 100.0 31 .................................... TAAAAAACACAGGCAAACTCGTTCAAGCTTT 1977149 35 88.9 0 ............................-.TTG... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.4 30 GTTTTAGAGCTATGCTGTTTTGAATGGTTCCAAAAC # Left flank : GCTATCGTTCGCGGGGAAGGGCTCACGCAGATGAAAGGATGTAAATGTTCCTTTAAAAGCTATGCCGTACTTAAAACCAGTCAGATAGTTCAAGTTAGCCAAATTTAAAGAATAGTGATGTGATAGGTAAAGGGGAAATGAGTGAGGCGGACCGTAAATTAGGCGATTTTTACTGTGCTTATCAAAGTAAAAATCGCTCATGCTCCGCCAATTAACCGTAGAGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTCCGCCTAGAAATTAATCTGAGAAAGTTGAAAAGCAGCGCAGAATTTTTGCTTACTACAGCAACTAACTCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGTTTTTGCCGTATAATAGTGCTATGAACGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : GAAGTGTTAGCTCCGCCTTTCCCCTTTTGATTGCTAAAACTAAAAATAAATTTGAAAATGTACCTTTGTCAATGATGTGAGACCAAAACAGGGATTGAAAGAAACTGAATATGCTATTCTCTAGAAGGAGCTAGCTGCTTCTAGTTTTTTTCTTGTTTCGATGGGTGAGAGCCAGTCAAGGGTCTGCATGGGTAGTCGATTGGACTTGTAGAGGTAGCGCTCCATTTGCTTAATGAGATCGTCGTAGGAGTAGAATTGGAGATGTTGGTAGAATCGCATGTTGTCATTGCGATGACTCCTTTCGACTTTTCCAATATGTCTTGGCGTCCTAGGTCTGATACACTTATGTTCACTGCCGATCTACTGACAGAGGATGTCCAGAGGATGACAGAGGATGTCCAGAGGATGAACCTTGTCGGTTTCCCTAAAATGAGTGAATTCAAAGCCGTTGTCAGTTTGAATGATTTCTGGTTGGTATCTAAAGTGTTTGATAGCCATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //