Array 1 56622-56789 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV841598.1 Streptococcus sp. HMSC36C04 Scaffold125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56622 36 100.0 30 .................................... CGAAGAAACAGATGACTCTGCATACTTCGA 56688 36 100.0 30 .................................... TGGTCGTAGGCGTAGTTTAGAAATCTTTTA 56754 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 95.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTATCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGATATAATATTAGTAAATATAAGGAATCATTTGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAACTTGGACAAAGAATTTGACACACTTCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTATTGATTTTGTCTTCAACAACTACGAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTAGTCTTTATATTGGAGTAGTTGTATATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCATGGACAAGGCTGTTGCGAACTACCAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAAGTCTATTGTCGTTCCGAAAGGTGATAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 56879-57178 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV841598.1 Streptococcus sp. HMSC36C04 Scaffold125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56879 36 83.3 30 NNNNNN.............................. ATTATTGATTTTGTCTTCAACAACTACGAA 56945 36 100.0 30 .................................... ATTAGTCTTTATATTGGAGTAGTTGTATAT 57011 36 100.0 30 .................................... TCATGGACAAGGCTGTTGCGAACTACCAAA 57077 36 100.0 30 .................................... CAAGTCTATTGTCGTTCCGAAAGGTGATAA 57143 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 93.3 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAACTTGGACAAAGAATTTGACACACTTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCGAAGAAACAGATGACTCTGCATACTTCGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGGTCGTAGGCGTAGTTTAGAAATCTTTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAGACTGATAGGCATATCCTTTGCACTAGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGGCTCATGTGTCACCTTTCCTCCAAAAGCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGTCAATGACTTTTAAATATGGCGGTTTAAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGTCAGACCACATATTATCGCTTGAGAAGACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACCAGAAGCCGTTAAAGTTTCATTATGTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 57334-57568 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV841598.1 Streptococcus sp. HMSC36C04 Scaffold125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 57334 36 100.0 31 .................................... TGGCTCATGTGTCACCTTTCCTCCAAAAGCA 57401 36 100.0 30 .................................... GTCAATGACTTTTAAATATGGCGGTTTAAG 57467 36 100.0 30 .................................... GTCAGACCACATATTATCGCTTGAGAAGAC 57533 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 100.0 31 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTATTGATTTTGTCTTCAACAACTACGAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTAGTCTTTATATTGGAGTAGTTGTATATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCATGGACAAGGCTGTTGCGAACTACCAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAAGTCTATTGTCGTTCCGAAAGGTGATAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAGACTGATAGGCATATCCTTTGCACTAGA # Right flank : CACCAGAAGCCGTTAAAGTTTCATTATGTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCGTAGCACATTCGTAAAACTGCCCTTTCAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAGCAACTGGTCCATATAATAATGTGGTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTGATACAGCGTGACTATGAGATACAAAATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 57726-57959 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV841598.1 Streptococcus sp. HMSC36C04 Scaffold125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57726 36 86.1 30 NNNNN............................... CGTAGCACATTCGTAAAACTGCCCTTTCAA 57792 36 100.0 30 .................................... CAGCAACTGGTCCATATAATAATGTGGTTA 57858 36 100.0 30 .................................... CTGATACAGCGTGACTATGAGATACAAAAT 57924 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAGACTGATAGGCATATCCTTTGCACTAGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGGCTCATGTGTCACCTTTCCTCCAAAAGCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGTCAATGACTTTTAAATATGGCGGTTTAAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGTCAGACCACATATTATCGCTTGAGAAGACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACCAGAAGCCGTTAAAGTTTCATTATGTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATGACAGTTGCCCAGCAACATCAGTATACGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAGCAAGTGTTATTGCTATGGCTGGGAATAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGAGCTGGATTGAACTCAATTGGTACGATAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACGCAAGCAAAACAGGCAGGGTTTGGAAAGTTTTAGAGCTGTGCT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 5 58443-58743 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV841598.1 Streptococcus sp. HMSC36C04 Scaffold125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 58443 36 100.0 31 .................................... AATTGGGGAAAGCTGGCTCTTTGGATGTTAA 58510 36 100.0 30 .................................... TACGAGGGAACGAGCGGATATGACAACGTT 58576 36 100.0 30 .................................... TAGAACAGGTCCTTATAATAATGTGGCTAT 58642 36 100.0 30 .................................... CGTGGTCACTACATCAGCTAGTGTCAATAA 58708 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATGACAGTTGCCCAGCAACATCAGTATACGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAGCAAGTGTTATTGCTATGGCTGGGAATAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGAGCTGGATTGAACTCAATTGGTACGATAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACGCAAGCAAAACAGGCAGGGTTTGGAAA # Right flank : CACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTGTTTTTATGCAAACATGAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGTCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGGTGGATCGCCTTACAGCGGGAAGTCAACAATTGCTTTCCTTCTTGCTCGGAAGTACGATCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGTTGAGACATCCAAAGGAGATGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 124489-124242 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV841604.1 Streptococcus sp. HMSC36C04 Scaffold174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 124488 37 100.0 34 ..................................... AGATAGAATAGAATAAGCAATCCGCTCTCCTTCA 124417 37 100.0 33 ..................................... TGTCAAGCTTCTACCATCTGCATTTGTGAGTTG 124347 37 100.0 33 ..................................... CCTGGTGTGTGAATCAAAACTTTGTTTGACTTA 124277 36 89.2 0 ..........C....................A-...T | ========== ====== ====== ====== ===================================== ================================== ================== 4 37 97.3 34 GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Left flank : TATTACGATGTTAAGAATGAGGAGTTACTTGAACTGCTCAAGTAGCTCTCAGTTCTTCCTTTTTGGTTCAAAATATGTTATAATCAAAGAAGTTTCCACTTTTGGGCTGTTAAAACAAGATATGGTGGTTTTCTGGTATTTATGTACAAAATATAGGGTTAGTAACCTATATTACCTCGAGAGGGGACGGAAACCCAGTTGGTTTTAAGTATTGCGATGCATAAACCAGTTAGTAACCTATATTACCTCGAGAGGGGACGGAAACCTTCTTGTTTGTTCATTTTATTCCTCCCACATTTTCAGTTAGTAACCTATATTACCTCGAGAGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACCTATATTACCTCGAGAGGGGACGGAAACGCGTCATTTCCATAACGGTCGCCCATGTCATAGTAA # Right flank : AGATAAAAATCGCTCTAGTGGGCGCTTTTTGTTATTTTGAAGTTCAAAAGTTCTTGAGGCAAAATGTCTCTTAGAAGTTTGAATTGCAAAAGAAGACAAAGGCTATCTATTTTTTGTAAAAAATCCGAAATTTTAGTATAATAAAAAGACTAGAAGTATGAGGTAATGCTATGGAAATGAAGCAAATTAGTGATACAACGATTAAGATCACAATAAAATTAGAAGATTTAGAAGAACATGGAATGGAGATGTCAGATTTTCTTGTTCCGCAAGAAAAGACAGAAGAGTTTTTCTATGCAATTTTAGATGAGTTGGAAATGCCAGAGAGTTTTTTGGATAGCGGTATGCTCAGTTTTCGTGTAACTCCTAAACCAGACCGACTGGACGTGTTTGTCACCAAGTCTAAGATTGATAAGAATCTGAACTTCGAGGATTTGGCGGATTTGCCAGATGTAGAAGAGCTGTCTCAAATGTCTCCAGATGAATTTTTAAAGACATTA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 134141-133532 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV841604.1 Streptococcus sp. HMSC36C04 Scaffold174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 134140 37 100.0 33 ..................................... TCTTTAGAAATCATCTTACGAGCAATACTATTA 134070 37 100.0 34 ..................................... TGACCTTCCCATTTATTATAGATGATGTTCATAT 133999 37 100.0 35 ..................................... TTTAGCAGCAAGTTGCCAAATTGTTCCTTCTTCTT 133927 37 100.0 35 ..................................... ATAATTTGTTTCATGATATCCTTCTTTCTGTCAAT 133855 37 100.0 33 ..................................... TCTTTAGAAATCATCTTACGAGCAATACTATTA 133785 37 100.0 37 ..................................... CCAAGCACCTTTCCAATATAAACCAACTTCACACAAA 133711 37 100.0 33 ..................................... TCTTTAGAAATCATCTTACGAGCAATACTATTA 133641 37 100.0 36 ..................................... TCGTTCTGTGTTTGCGCAAGCTGCAAAGGATTTTAA 133568 37 81.1 0 ..............................TTTTTTA | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 97.9 35 GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Left flank : AGGAGAGTCCAACGTTCTTGTTTTGAAATTGATGTTGAAAAAACAAATTATAATCACCTTCTTCAAGATTTAGAAAAATTTTATTGTCAGGAGGAGGGAGACAATATAATTGTTTATGTTGGTGATAAGAAAGAAACAGTCATCTTCAACTCTTATGAAGGAGCAGAAATTCTGGAAGACATTTTGTTTTTCTGAAACTTTTAATTTAATGAAAAATATGGTAAAATATAGATATGTTTCCAAATCTTGAATAAAACAAGATTTAGGGGTCATTCTCTGAAGCTTGATACAAGATATGGGGTTAATAACCCATGTTACCTCGAGAGGGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACCCATGTTACCTCGAGAGGGGACGGAAACAAGTCATGTTTTCGATTTTACTTTCTTTTTTTCG # Right flank : CATGAAATTCGCACAGATACTTGACGACGCTTTCATATTATGCTAATATATTGATTGTAAAGAATAGTTCTGATAAACAGAGAGGGCGCCCTTAACTGGTGAAAAATACTTTCACTTTTTGGGGTGCTTTTTTAGTAAGGAAGGTTAGAAATGTGAAGAAAGTACAATTGTATTTATCAAACGTTGAAATAAGAGACGATGCTCTAGTATCTAAGTTGCAAGGATTTCTAATGAGCCAGATTTCGGAGGATTTTGTGGATTTTCTTCATGAACAAGAGACAAATCCCTACTCTTTAAATCTATTATCCACGAGAGAAGGAACGATATGGACGGTCAATCTACTTACCCAAGAAGCAGAAGAGAAGATATTGCCTCAGCTTCTGGATTTAGAAGAGATTCAGTTAGATACTTACTCAGGAGCCATATCTGTAAAGAGAATAGAGATTCAGACTTTATCACAAGAGACCTTATTGGAAATTTTTCGGGAGGATGATCCTAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //