Array 1 228138-227971 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079818.1 Neisseria perflava strain LPB0400 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 228137 35 83.3 30 AAA.....-AT......................... ACCGTCAACCAATTTACGCAATTCGTTAAT 228072 36 100.0 30 .................................... TTATTGCTGAGATTTATTTCACTTCCCAAT 228006 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 94.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CGGCCAAACAACGGCTATATACCTAACCGTTCATCTCCTTACCGCACATTTCAAAAACGCCAACCACTTTACAGCATTCGCTGGCATGAGCCCGCAACAGAAAAAATCAGGGACAAGCGTCAACGGCAAAGAAAAGCTGACAAGGTATGGCAACAGAAAACTACGCGGCGCCCTCTTCATGGCCGCCATGGTAGCCATGCGTCAAAATTACTTTCCCGACTTCACCAAAAGACTGCAAAAAGCCAAAAAGCCCAAGATGGTTATTATCTGCGCCCTGATGAGAAAGCTACTCGTCATTGCCTATCATCTGCACAAAAACCAAACCGACTTCGATCCGAGTCGGTACAAACAAGCGTAAAGAGCCTTAACAAAAACGCAAAAGCTACGCGGATAATCGTAAAATATTCGCGCGGCCAATTGCATTCTGTAAAAATTGCAAAACTAAATAAACAGGAAAAACAATAATATACAAAAATGACAGTAAATTACTATTGCATGTT # Right flank : ACTTCGATGGGAAATCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGTCTAATAAAATGAGCTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAACCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGTAACGAGTCTCGACCTTTGACAATACGGCTGTATACAGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGTTGTGGTGACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCGTTTTTATCGGTTACGCTGGCTTGAAATGAGGAAATCATTTTGTCTATGGCAGCCAAGGTG # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.97%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 2 236177-236008 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079818.1 Neisseria perflava strain LPB0400 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 236176 36 88.9 30 T...G..GC........................... AAACAGCGACTGATTATGTTGTGTCTCAGA T [236170] 236109 36 100.0 30 .................................... GGCTTTAAGGGCTTCCTCTTCGTCTTCAGA 236043 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 96.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCTAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGCAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCACATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : GCGGCATATTGTTGGCAGCCTCTTTTATCAGTTGTAGCTCCCTTATATATTTCGCTCCATCGAGGGGCGCAATTTTTTACACTTCTTATAGAACTTTAAGCCCCTTTAACTCTAGCCAGTGAAGGGGCTTTCTTATGTGCATCGCATTTTATACAGTCAATTCAGATAGTTTTTACAGTTTTGAAGAACAAAGAGCCGTTATCGTCCGCGTTTTCAAAGATGATGAGCTTGTAGAAACCGTTTCATTTCCTATTACAAATCCCAAACAAAAATATAAAACAGAAAAACAGGCTGAAGAGTATGGCCGTCTTGCTGTCCGTTCTATTTTGAACCAATGGGAGGCAGACGCATGAGAGCCGAAGAGAGAGCAGAAACGGCGGGGGCGTGTGGGGGCGCGCCTTGCGCGCCGCAAACGGCCACGCCGTTGAATGCCCCCCCTAGGCTAATAGGGGGGGAGCAAAAAAAACCTAATCCACAAAGTGGGGAGCAAACCGAAAAAA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.10%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA //