Array 1 4269252-4265264 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068227.1 Shewanella algae strain A59 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4269251 28 100.0 32 ............................ TGAACCAGAAGCCCCACAGTATGAAATGTGTT 4269191 28 100.0 32 ............................ GCCAAGAGTATTGCCCGCGACATTGCTGCTGT 4269131 28 100.0 32 ............................ GAATGGCAGCAAGGTACATTCCTGCTCTACTT 4269071 28 100.0 32 ............................ AAAATCTTTTCGGGGGCTGAAATGAAAACCCA 4269011 28 100.0 32 ............................ CTCGGCGGCAGTAGCGCCCAAAATGTATTGAA 4268951 28 100.0 32 ............................ GAAAGGGTGCCGGGCGTCCAAAAGGGTCTGGC 4268891 28 100.0 32 ............................ GCTTCGGCTCCGGCCAAGCAAGATTCTCGCTC 4268831 28 100.0 32 ............................ TTCCCCCGACGGTAATTCTTGCGTCAAAGTCG 4268771 28 100.0 32 ............................ TTCATCTGCGGCCTTCATTTGTAGCGGAGAAT 4268711 28 100.0 32 ............................ TTCAGGGTACTGAATGTCTGTGGAGCCTCATT 4268651 28 100.0 32 ............................ TATTGAGAGTGCCAGGCACCTAGGCTATCGAA 4268591 28 100.0 32 ............................ GCGAACTAATGGAAGATGACAGCTAAGCTACC 4268531 28 100.0 32 ............................ AAAAAGCATTTTGTCATGGCCATGGAAGAGGT 4268471 28 100.0 32 ............................ ATCTTCGCTTACCAACTCCCAATGGTGCTCAC 4268411 28 100.0 32 ............................ TGGAAGATGAGCTGGCTGCATCAACTGATTTG 4268351 28 100.0 32 ............................ GGGCTCATAGTATGTGCTGGAGTTGCGCTTTA 4268291 28 100.0 32 ............................ ATATAGAAAGCAGCGAACGCCGCAAACGTGCC 4268231 28 100.0 32 ............................ AAGCATTGCACCGGCATTATCGAACTTATAAA 4268171 28 100.0 32 ............................ TTAATCAACATCCGAACGCCCCCAGGATTTCA 4268111 28 100.0 32 ............................ CCAGATGGAATGACAGAAGAGGATGTCATAAG 4268051 28 100.0 32 ............................ ATCTGGCGCGTTTTTGCGTATGTTGTGCGTCA 4267991 28 100.0 32 ............................ AAAAGGTGCGCTGGTAATGTACAGCGATTATC 4267931 28 100.0 32 ............................ TAAAGGATTGAGTTTTATTGCACCTACAGCCG 4267871 28 100.0 32 ............................ CAGCTGGATAGATTTAACGCTCATGCCATTGT 4267811 28 100.0 32 ............................ TTACTTGCCGCGGCATCTAAAAGACGGCGCAC 4267751 28 100.0 32 ............................ CGCCGAAGCCTAGAGAGGATGTAGCACACCCA 4267691 28 100.0 32 ............................ CAGCACTCTTCTGTGTGGTTCCAGTGTCCAAC 4267631 28 100.0 32 ............................ GGCATCAATCCAAGGCTTAGCCATAAGGCCTG 4267571 28 100.0 32 ............................ CTGATTGAAAAAGTCAAATGGCCTGACAAGGT 4267511 28 100.0 32 ............................ TCAAGGGCGTCACGCATTGATTTGCGGTTTTT 4267451 28 100.0 32 ............................ ATCTGGCGCGTTTTTGCGTATGTTGTGCGTCA 4267391 28 100.0 32 ............................ AATAAAGGCCCTGGTTGTCCAGACAACTGAAA 4267331 28 100.0 32 ............................ AGTATAAATCGGCTCACTTGGTGATGACTGCA 4267271 28 100.0 32 ............................ TTCTGTTGTTCCGCCTGCTGTTCCGTCTGCTG 4267211 28 100.0 32 ............................ ACCAGGCGGCTTTTTACTGGTTGACATTATTG 4267151 28 100.0 32 ............................ GCCAGGATGGCCAGCAATACATGGCATCAGAA 4267091 28 100.0 32 ............................ GCAGAGTCAGCAAGGATTCAACGCGCTGCAGA 4267031 28 100.0 32 ............................ AGTTATCTGCCCAGAGCAACCAGGCGCGGAGT 4266971 28 100.0 32 ............................ AAGCGCCAGGTTTCGAGTGCGTCTGAAGTAAT 4266911 28 100.0 32 ............................ GAACCCAGCATCAAGTAACACCGGCTCGTCTT 4266851 28 100.0 32 ............................ CGCCAAGGAATCCGTCAAAAGTTCCGCTAATC 4266791 28 100.0 32 ............................ GCATAGAAGAACTCAGAGATGAAATTGAGCTT 4266731 28 100.0 32 ............................ ACCTCGAGCGCCGGGAACTTGCGAGCCTACTA 4266671 28 100.0 32 ............................ CAGCGCATAAGCACATGGCAGTGCGGGTTTAC 4266611 28 100.0 32 ............................ GCTTGGCCGTACCTACGACAAGCTACACATCA 4266551 28 100.0 32 ............................ GTTGTTTGGCAATATCTGTATCACATCATTAA 4266491 28 100.0 32 ............................ TGCTGCCCAGCATATCGGCGAAGACTGCTGTA 4266431 28 100.0 32 ............................ GCTAATATTGCGGCCATAGCGATGAAGTTAAT 4266371 28 100.0 32 ............................ ATAAAATCATCTAACACATAACAAAAGCCCCT 4266311 28 100.0 32 ............................ ACCGAATCCCTGGTCAACAAGCACAGAGACTT 4266251 28 100.0 32 ............................ GAGCAAGGGCAAGCCAAAAGAGATGCAAGAGA 4266191 28 100.0 32 ............................ AATATGATAGATGATCACATCGGTAGTCTTGG 4266131 28 100.0 32 ............................ AAAATAGCGTCTTGCTGCTCTGTGTCTGTGGC 4266071 28 100.0 32 ............................ TATGGCTGGTGATGACGAAGGTCTTGACTACC 4266011 28 100.0 32 ............................ TTAGCTAATTTCGCTTGCGTAGAACACGCCAC 4265951 27 78.6 32 ..................C-.GG...GT CTGGGGCTGCTCGGCACCATAGAACACGCCAC A [4265934] 4265891 28 100.0 32 ............................ GCATAGTATGCGAGCATCACCATTGGTATGGT 4265831 28 100.0 32 ............................ AAACATAACTATACCAGAGCGAACCTGGGTAG 4265771 28 100.0 32 ............................ ATCTGGCTAGTGAATAGTTTCACCCTCTCATC 4265711 28 100.0 32 ............................ GTCTCTTGGGCCCGGCTACGGTCCTGCTGTTG 4265651 28 100.0 32 ............................ GCGATATACCGATTGCTGCTGTTCGGATAGTT 4265591 28 100.0 32 ............................ AGATTCACCGAGGCGGCATAGTCACAAAGGCC 4265531 28 100.0 32 ............................ TATTGGGTACCTAGCTGCTGATGGTCTTTGCT 4265471 28 100.0 32 ............................ GTAACGCTTAAATACTTCGGTAACTGCAAGCT 4265411 28 100.0 32 ............................ ATTGCGGCAGGCTGTAGCGGGCGTTGGCCAGT 4265351 28 100.0 32 ............................ GTCCAGCAAAGTTGATAAAGGCTTCAAGATTG 4265291 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 67 28 99.7 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCACCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTGTTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGATTTATTCTATT # Right flank : GTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAATATCCGAATTTCCTGCATTTATGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGACAGTTGGAAGCGTCCTGCTCTGGACGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGCCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCATGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAGACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //