Array 1 260900-258696 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQMI01000001.1 Neisseria lactamica strain M37155 M37155_HUY4067A190_cleaned_ctg_7549, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 260899 32 100.0 34 ................................ CGGAGGCGTGGACGGTGGGCGTGCTGGGGGCGGC 260833 32 100.0 34 ................................ TTTATTATTGGGGCTATAAATGAGCGATTTGGAA 260767 32 100.0 34 ................................ AGCGGCTGCGTGTTGAAACCATAGGGCTATCTTA 260701 32 100.0 33 ................................ GATTTCGGCGCGGGATTTGCCCATATATTCCGC 260636 32 100.0 35 ................................ TGGCATACGCCAACGCCGAACTGAAAGGTGTGGGA 260569 32 100.0 33 ................................ CTTGGCGGCAGGACAGGACGGCGCAATACCGGC 260504 32 100.0 33 ................................ TCCGTCAACGTGAAATCGGGTTTTGAGGCGGTA 260439 32 100.0 35 ................................ TTTGGAATCAACCGCCAGCCTGTACGTTTCCACGA 260372 32 100.0 34 ................................ AGCAGCTTTGAAACCATACTTTGCCAGTTGTTCG 260306 32 100.0 35 ................................ GATTTCGGCGCGGGATTTGCCCATATATTCCGCAA 260239 32 100.0 33 ................................ TTATTATTGGGGCTATAAATGAGCGATTTGGAA 260174 32 100.0 34 ................................ TCCGTCAACGTGAAATCGGGTTTTGAGGCGGTAG 260108 32 100.0 33 ................................ GCGAAACCTACGCTCGCCAATCCTGCCAATAAG 260043 32 100.0 34 ................................ CAAATATGCCAGGCGAGCATGATATGGAACATCA 259977 32 100.0 33 ................................ TTTAGCCTGTCTTACCTTCTCCCAAAGAGCTAT 259912 32 100.0 34 ................................ TCTTGTTCTTATTGGAGAATTTTCAAAAAATCAG 259846 32 100.0 34 ................................ AGTACCTTTAGGGATTTGTTTTTATTTCGCTCCC 259780 32 100.0 36 ................................ AAATCGGGGGCGGGGTCTCGGTGTTGGGGCGCGTGC 259712 32 100.0 33 ................................ AGCGGCAAACCGAAAGTTTCATACTCTTTCGCG 259647 32 100.0 33 ................................ AGATTATAGGGGGCATAAATTCAAGTCGGTTAA 259582 32 100.0 33 ................................ TTGACATATCGGATTTAAATTTAAAAGACCCTG 259517 32 100.0 33 ................................ GACGCATCCCGCGTCGTCCCCACCGCCGACGAA 259452 32 100.0 33 ................................ CAAGACTGGATATTTGAAGAGGTTATCCCTCAA 259387 32 100.0 34 ................................ AATAGATACAATCGAGCATCGGGGCGACGCATAA 259321 32 100.0 34 ................................ AATAGATACAATCGAGCATCGGGGCGACGCATAA 259255 32 100.0 35 ................................ AAGCATTGGGAAATGCGGCTGACGGATTTTTTTCA 259188 32 100.0 33 ................................ CTGGGCATTAACCTCCACTATCTACCAATCAAG 259123 32 100.0 35 ................................ TGTACCCCCCCTGTTAGATAAGGGGGGAAGATTTG 259056 32 100.0 33 ................................ AGAACAACAAAGGAGGATTTGAACAATTAATAA 258991 32 100.0 34 ................................ TCTCAATTGACTTGCCGCTTGTGGATATGCGGTC 258925 32 100.0 35 ................................ CGAAAACGGTATTAAAAACTATGTCTGCTACGGAG 258858 32 100.0 34 ................................ CAGATTGGAAGTGCCTTAGGTTATAAAAATCCAT 258792 32 100.0 33 ................................ ATTAAAAAACTTTTTTCGCGGTATGCTTCGGGT 258727 32 93.8 0 ......................A.A....... | ========== ====== ====== ====== ================================ ==================================== ================== 34 32 99.8 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCTGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATAGTAGGGATGTGTAAACCGAATTATGGCGGCATCGCCTTATTGCCCTTACTTTTGGCATCTTGTATCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCGAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCTCCTGCCAAACCCTCTATAGAAACCACGCCGGTCAATCAACCCGCCGTCGGTGCGGCAATGCGGCTGCCAAGGCGGAATATTGCTTTTTATAACAAAGACGGTACAGAAATTCCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 197453-197884 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQMI01000004.1 Neisseria lactamica strain M37155 M37155_HUY4067A190_cleaned_ctg_7555, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 197453 36 100.0 30 .................................... TGATTTGCGCGTCGGTTGCGCCGAAATTGC 197519 36 100.0 30 .................................... TCTACAGCCTCAACGATTTACACAAAGCAG 197585 36 100.0 30 .................................... TACAAATCTTTCTGGACGTCCTCCCCCTGC 197651 36 100.0 30 .................................... ATTTGCAAGCTAACCTGACCACAATCAAAA 197717 36 100.0 30 .................................... GCGAATTAACATCATAAAGTCATTGACAAG 197783 36 100.0 30 .................................... AAATTCAATCTGACGCAATTCTAGACGCAC 197849 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGCTGCGGCAAAATAGAAAACCGCCCTTAATCGGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATTAAGGCTAGAATAACCCTAGCATCAATCGTAACAGTCAATTGCAAAATTCCTATGGTAAGAGAGATTTGCATTTTGATTTTTCCTGTTGAAGTTTCAAAACTTGGCAGGAATGCAAAAATCCCCTTGTTGTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGCTCTTTAAGTTTCGCGCCTCTCGCGCCTGAATCTATCTCATAAAGTTCCTTATATATTA # Right flank : TACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //