Array 1 555606-556934 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062124.1 Listeria monocytogenes strain FSL R9-0915 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 555606 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 555672 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 555737 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 555801 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 555867 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [555873] 555935 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 556000 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 556065 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 556131 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 556195 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 556260 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 556325 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 556390 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 556453 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 556516 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 556582 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 556645 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 556710 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 556776 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 556841 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 556905 29 93.1 0 .......................A....C | C [556928] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2672507-2669826 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062124.1 Listeria monocytogenes strain FSL R9-0915 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2672506 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 2672440 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 2672374 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 2672308 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 2672242 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 2672176 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 2672110 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 2672044 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 2671978 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 2671912 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 2671846 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 2671780 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 2671714 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 2671647 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 2671581 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 2671515 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 2671449 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 2671383 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 2671317 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 2671251 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 2671185 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 2671119 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 2671053 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 2670987 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 2670921 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 2670855 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 2670789 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 2670723 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 2670657 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 2670591 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 2670525 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2670459 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2670393 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 2670327 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 2670261 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 2670195 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 2670129 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 2670062 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 2669996 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 2669930 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 2669864 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [2669829,2669832,2669837] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //