Array 1 165547-163927 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023439.1 Streptomyces tuirus strain JCM 4255 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 165546 29 100.0 32 ............................. GCTACGAGCCCTACGCCGAAGCCGCAGCCCGC 165485 29 100.0 32 ............................. CACCGCCGCCAGTGGCTGCGCACCCACCAGCA 165424 29 100.0 32 ............................. GAACGCCGCCCCGGCAAACGCGCCCTCTTCGA 165363 29 100.0 32 ............................. ACGGACGCTTCGTCACCCCACCGGCCGCCAGC 165302 29 100.0 32 ............................. ATCACGAACGCGTCCTCGTCGTCGGCGAGGGT 165241 29 100.0 32 ............................. CTCCGGATCAACACCACCAGCGTCGGCTCCGG 165180 29 100.0 32 ............................. GGCAGCATGAGTAACGCGCTCTGCGCACTGCT 165119 29 100.0 32 ............................. ACGCGGCAGTTGCGGGAGCAGCATGCGTACCG 165058 29 100.0 32 ............................. GCCGCCTACGACCTCACCATGTTGGACCGGGA 164997 29 100.0 32 ............................. GGCGAGCGCTGCCCGTGGCCGTGGGAGCCGCA 164936 29 100.0 39 ............................. GCGGAGCCCTGCCTGGACCGGCGGGCCCTGCGGGATCTG 164868 29 100.0 32 ............................. AGCACCGTGTCGGCCTACGAACACGGCCGACG 164807 29 100.0 32 ............................. TCCGGCTTGACGGTGCGGATGCGTGGCATTCA 164746 29 100.0 32 ............................. AGGAACCGGCGCCCCGGCTCATGGATGATGCG 164685 29 100.0 32 ............................. GTCACCGGCGTATCCCCCGGCGGGATGCTCCA 164624 29 100.0 32 ............................. GCCTCCCAGGCCTACAGCCCCCTCGACGGGGT 164563 29 100.0 32 ............................. GTCCCCGGTATCGCGGACGTCATCACCGCGGA 164502 29 100.0 32 ............................. CACGCGGCCAAGTACGGCGGCGCCCTCGCGGG 164441 29 100.0 34 ............................. ACCGTCAGGTCGGTGTCGTTGGTGTCCCCCGCAG 164378 29 100.0 32 ............................. CAGTTAGGCGGGTTCGTCTTCAACGGCGACCC 164317 29 100.0 32 ............................. CAGATCCAGGCCACACGCTCTGTGCTGGCGCC 164256 29 100.0 32 ............................. CTAGGAACTGGGGGCGCAATGGGCGTTCTTGA 164195 29 100.0 32 ............................. GGCCCCCACCTCGTCCCGCCGTTGCGGCAGAT 164134 29 100.0 32 ............................. GACGTATCCCATGCAGAACCTCGTGGATCACT 164073 29 96.6 30 ....................A........ CCCGCACCCGCGGACGGCCCGCACTGTAGA 164014 29 86.2 32 AG.TG........................ AACGTCACCGTAACCATCATCTGACCAGGGAG 163953 27 82.8 0 ...................--.A.CC... | ========== ====== ====== ====== ============================= ======================================= ================== 27 29 98.7 32 GTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCATCAACTACGACGGACCCGACGACTACGGAGATGAGCTCTGGTGACCGTCCTCGTCCTCACCAACTGCCCAGCGGGACTACGAGGCTTCCTCACACGCTGGTTGCTGGAGATCTCCGCAGGCGTGTTCGTGGGCAACCCGTCAGCCCGGATCCGCGACATCCTCTGGGAAGAGGTCCGGGCGTACGCAGGCCAGGGCCGCGCCCTACTGGCCCACACTACGAACAACGAGCAGGGCTACACCTTCCGCACCCACGACCACACTTGGCACCCGACCGACCACGAGGGCATCACCCTGATCCACCGCCCCGACCCGAACGCTGCTACTCCTCGCCCCACTCCCCACGGTGCCCGACCGCCCGGCTGGAGCAAGGCCTCCAAGCGTCGGCGTTTCGGGGGAGGCTGATGCGCGACGAGTCCCGTATGACCCATTCGCCGGAATCAATGAAAGTCCACGATTACCGCCTTCAAGGTCAATGAAGCACCAGGTCAGACAGT # Right flank : GGAAGGGTCGGACAACCAAGCCGCAATACCTGGACTTTAGGCCAGGGAGCACGTCAAAGCATCTGACGACCGGCCAGGGCCCCACCCGGGTCGTCGGCGAGCATGACGTCGGCGGTGATGCGCTTGCCGACCGGCTCACGGTGGATGGCGAAGCCGACGCAGATGGCGGCCACGATCTCCAGGCCGTGCTGGCCGATCCGGCTGGGGTCGGGAGCGAGGATCGTGGGCAGGGTGGTGCTGCTGTCCCAGACGCTGATGCGCGCGGCCCCGTCGGCGATCTCGAGAGTGAGCAGGCAGGGGCCGGGGGCGTACTTGCGGGCGTTGGTGACCAGCTCGCTGACCACGAGCTGCACCATGCCGATGGCCCGGCTGGAGACCGGAAGGCCGTGCACCGCCTGCACACGCGCCAGGAAGGTGTGGGCCATGTCCCGGGCTTCAGCGATGCCCGTGTCGTCGTCGAACGCCGCGGACACGGAAATGGCACTGGTGGCCAGCGGGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 175280-176714 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023439.1 Streptomyces tuirus strain JCM 4255 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 175280 29 100.0 32 ............................. TGGGTGGGACCCGCGGCGCAGGCGATCAGGTA 175341 29 96.6 32 ............................T CCGGTCGACTTCGCCATGGCCTAGTTCCCTTC 175402 29 100.0 32 ............................. GACCACGAGATCGGCCAGTACGAGACGGCCGT 175463 29 100.0 32 ............................. GACCTCACCGGCAACGGCTGGTCGACGGCCAC 175524 29 100.0 32 ............................. TGGGTGGGACCCGCGGCGCAGGCGATCAGGTA 175585 29 96.6 32 ............................T CCGGTCGACTTCGCCATGGCCTAGTTCCCTTC 175646 29 100.0 32 ............................. GGAAGCCGGACGAGCTCCGGTTCGTGCTCGCC 175707 29 100.0 32 ............................. GACGCCAACCGGTCTGCCTACGACACCGAGCT 175768 29 100.0 32 ............................. TCAAGGGTGGTGCCTAGCCCGTCGAGGATCGG 175829 29 100.0 32 ............................. GCGCCGGCTGCTCCACCGGTCGCCGTGAGCGA 175890 29 100.0 32 ............................. ATGCGGACGGTGGTCTCCATCGTCTCGGCGAT 175951 29 100.0 32 ............................. TCGCTGCTTTCCCGCATGCGGAGTTCGGCGAA 176012 29 100.0 32 ............................. GAGACGCCCGACGAGTACCAGGACGGCCAGAT 176073 29 100.0 32 ............................. GGCTGCACCATCACTCGCGAGCCCACCCCCGG 176134 29 100.0 32 ............................. CCCGCCATCCGCAACCTCCCCGACGAACAGCG 176195 29 96.6 32 .......................C..... TCCGGATTCACGTAGTGGTCGGGGTCTGCGAG 176256 29 96.6 32 T............................ GGCGTGCACGGTGCGGGAGACGACTCCCTTCC 176317 29 100.0 32 ............................. AGGCCGAAGTGCCCCTTGTTGTACGTGTTGTA 176378 29 96.6 31 ............T................ GACGTAGTCTTGCGGGGGCGCTGGAGTCGGC 176438 29 96.6 32 .................A........... GCCCTGATCACCACGGTGTCCACGCTCCCCGC 176499 29 100.0 32 ............................. CATGGCGCGCACTCGCTCGATGGCGGCCTCGG GATG [176523] 176564 29 82.8 32 ...........C..TT.....G......G ACGGTCGTCATCAGAGCGCCTTCCGGGTCTTG 176625 29 93.1 32 ........................AC... GAGAACGGCGCTCGGACCATGCCGTCATGGTC 176686 29 72.4 0 ......A.TA.G.GT....C....T.... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 97.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACGCGGGAGTCGCCTTGCCGATGTCATGCACACCGGCGAGCCACACGGCAAGAGCACGCGCGTCCGCCGCACCCCCTGGAAGCACCTCGGCTATCAGCCTTCGCACCCCGCGAGGCAACCACTCATCCCACAACAACCCGGCCGTTGCCGCGCTGTCCTCCATGTGCCGCCACAAAGGCAGCCAGCCGTCGGTATCTCGATCGTGCTTAGCCCACACGGCTCGGGCCGACTGCCCAAGCCGACCCAGCAGACCGGAACAGGCGCTCCCCCCACTGTCCATGAAGGATTGATACAGGTAGCCGGCGACTCAGCAAACCAAAATCGGTGAAACAGGATGGTACGCGTGGAAACTGCGCACCAGCGGCGTAGGGTGATCGGTTCAGCGTTGGCTTGCCAGGATGCCCCGAGGAGCAAGGTTGCACTTTATGTTCCATTGGCCGGAATCTTTGCAACTCTACGAAACGACGGCTCCCCAGCGGTAACGCCCCAGGTCATCCACT # Right flank : CGAACACGCCGGGCGCGCAGCCTCGTTACGTCTACTGCTCCCCGTAGCTCGGGGACCTTCGGGGAGCTCGTGTGGAAACTCCGGCCACCGGTCCCCAACTGAGCAGAAACCAGTGCTTAGTTGTGCAGAGCGATCGGCCAGGGCGTCTCTTGCGGCCAAATGCAAAGAACTTGAAACATCACAACACGCACGGCGTAAGAACGGAGAAACAATGTGCGTATGACAAGTAGCGGACGTTGCAGTGGGCTTGGAGAGCGGAGTCCGGAGCATCGGGATCTGCCCAGCATCCCTGTCTCCGGCTGGAGGTGCTCGGTTGTGAGCACGTGTTCGCCACCACCTGGCGCCTCGTTCCTTGCCCTCAGTCAGATGTTGTTTCTAGCCACGTTCCCAGGTCTCGCTTCTTTGCTCTACCTGCAGGGTGCTCCCACCACAAAGATCATGGCTGTATTGGGCGGGAGTACATCCCTTGGATTGACAGCTCTTCTACTCCTGTCGGGAAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //