Array 1 243132-241289 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXVQ01000002.1 Salmonella enterica strain SEH-12 NODE_2_length_730452_cov_27.9966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 243131 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 243070 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 243009 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 242948 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 242887 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 242826 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 242765 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 242703 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 242642 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 242581 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242520 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242459 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242398 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242337 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242276 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242215 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242154 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242093 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242032 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 241970 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241867 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241806 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241745 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241684 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241623 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241562 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241501 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241440 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241379 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241318 29 96.6 0 A............................ | A [241291] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260206-259263 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXVQ01000002.1 Salmonella enterica strain SEH-12 NODE_2_length_730452_cov_27.9966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260205 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260144 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260083 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260022 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 259961 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 259900 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259839 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259778 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259717 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259656 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259595 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259534 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259473 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259412 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259351 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259290 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //