Array 1 673077-671991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGEB01000075.1 Bacteroides fragilis str. 1007-1-F #3 gbf10071F3.contig.74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 673076 35 100.0 33 ................................... CACAAACCGCCGATAGTGAATGGACTAAGCAGT 673008 35 100.0 36 ................................... ATATGATAATCGACTGGGAATGTGCTAGATACACTA 672937 35 100.0 36 ................................... TCAAGTCACTTCCGAGGGTGCGCAACTGATTGATGT 672866 35 100.0 33 ................................... AAAGAACTTTGACAGCAGAAGGAAAAGACATGA 672798 35 100.0 35 ................................... TCAGGGATTTGAATGAAGACCCTCACAGCTATAAT 672728 35 100.0 37 ................................... GAAACCGCAATGGCACAGTATCCCGGACAGGTTTTGT 672656 35 100.0 38 ................................... AATTCTTTACAATGACAAAATCGTCACTTTAGATGAAA 672583 35 100.0 36 ................................... TTTTATCTGTTCTTATCCTTATATCGCAATAGCGAT 672512 35 100.0 34 ................................... AATTATGAATCTTTAATGGCAGTAGACCCCTTGT 672443 35 100.0 37 ................................... CTTCAATGAAATCATTGAGTGGTTATTACCAACTGGG 672371 35 100.0 35 ................................... ACCAATGGGGACGTACAGTGAATAAAATCGCCAAT 672301 35 100.0 30 ................................... TTCATCCCTAGTAAAATCAGTACAGCTAAA 672236 35 100.0 35 ................................... TTGAAGAAACAGGCAAGTTGCGAACATGAGTTTCT 672166 35 100.0 35 ................................... AACGATATCCAGAGCGACATACAGCTCAATGGAAT 672096 35 100.0 36 ................................... TAAAAGCATTAGCGACAAAGATTGGAAGTGACAAAT 672025 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 16 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAATAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGCATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 24184-23256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGEB01000077.1 Bacteroides fragilis str. 1007-1-F #3 gbf10071F3.contig.76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 24183 29 100.0 35 ............................. ATCAAGTGGTCAGCCTTAAATCTGTTGCAAAAGGA 24119 29 100.0 35 ............................. AGCTGAAGGCTACCACCTCCAAGTTCGCCACTACC 24055 29 100.0 35 ............................. TATTTATAACTCGGTTTATTGCATGGATTCCCGCA 23991 29 96.6 36 .....................T....... TTTCATTATCCTTTGGTGAACTTTTTGATTTTCACT 23926 29 100.0 36 ............................. CGGCATACCAGTATGTACCCTTCATCCCTTACCTCC 23861 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 23798 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 23735 29 100.0 37 ............................. GTATATCCTTATTGTTATACTCGTCAAGCATTGCAGG 23669 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 23604 29 96.6 34 .....................T....... TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 23541 29 100.0 36 ............................. TGTATACATATAGAACATAATAATGCTTGTATCCGC 23476 29 100.0 34 ............................. CTGAGTATTTCGACTTGTATTTCTTTGAATTCCA 23413 29 100.0 34 ............................. TAGCTAATGGAAATTCTACAGACGTGTCTTCTTT 23350 29 100.0 36 ............................. TTCGTCATACTCTGAAACAGAGCGACACCATTTCTT 23285 29 93.1 0 .........................G.C. | A [23261] ========== ====== ====== ====== ============================= ===================================== ================== 15 29 99.1 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTGGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGATTTTTTTCTTCTTTGCTAGCAACATCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTATGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //