Array 1 65495-64064 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI519517.1 Actinokineospora inagensis DSM 44258 H504DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65494 29 100.0 32 ............................. TCCGCGGTCGTTCACCTCCGGTCACCGATCCG 65433 29 100.0 32 ............................. GCCCTCGTCGCCGAGACCACCGCCACCGGCGA 65372 29 100.0 32 ............................. ATCCCGCCCACCGCGCAGGGTGTGGGGATCAC 65311 29 100.0 32 ............................. GACGGCGGCCGCGACTGGGGCTCCGTCCTCGC 65250 29 100.0 32 ............................. GGCCTCGTCAATGACGACCCACAGCCGGACCG 65189 29 100.0 32 ............................. CAGGGGTCGTAGAGCACGGTGTCCCGGTCCTG 65128 29 100.0 32 ............................. CGCTCACCGAGGGGCAGCCGCCGATGTGCAGA 65067 29 100.0 32 ............................. ACCGGGTCAACCGCTTCCTGTCCGGTCCGTCG 65006 29 100.0 32 ............................. GGGTGGTCGGTGCCATAGAAGGCCAGGTCCCC 64945 29 100.0 32 ............................. GCGACCACCAGCACCGTGATGGGAAATGTGAC 64884 29 100.0 33 ............................. TGGACCCGGCGCGGCCACATCACCCGGCACCCC 64822 29 100.0 32 ............................. GCGACCACCAGCACCGTGATGGGAAATGTGAC 64761 29 100.0 33 ............................. TGGACCCGGCGCGGCCACATCACCCGGCACCCC 64699 29 100.0 32 ............................. GCGACCACCAGCACCGTGATGGGAAATGTGAC 64638 29 100.0 33 ............................. TGGACCCGGCGCGGCCACATCACCCGGCACCCC 64576 29 100.0 29 ............................. NNNNNNNNNNNNNNNNNNNNNNNNNCCCC 64518 29 100.0 32 ............................. ATGAAGACCACGATGCTGGACAGTGGCGAGGT 64457 29 96.6 32 ............................G GCGACGGCGCGGACATTCCGAGCAAGGCCGTG 64396 29 100.0 32 ............................. CGCGCCGACGACGCCCCGAGCGGGTGGGGTTC 64335 29 96.6 32 ..........T.................. GGGTCCGCCAGCATCCGCCCGGCCGGGTGCGA 64274 29 96.6 32 ..........T.................. CAGCCCGGAGCAGACGCTCACCCCGCCCATCC 64213 28 96.6 32 ...........-................. CCGCCGGTCGTGTGTGCCCGGTCTGTGACCTC 64153 29 96.6 32 ............................G GCCAAGGTGGCCATCACCCCGGCCACCGGCGC 64092 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CGCGCCACTTCCCCAGGCCCAGCCCCACCCACCACACCTCGAACGTCACCCACCTGGGCGACGGAAGTTATCCACAGGAGGGACTCTCCGGGGCTTGGATCAAGATCCACTGTCGGTGCCTGCCGGTAGACTGGCATCGAGGGCTGCCCCCGGAGAGGGTGGGGGCCGCCTGTAGGGGGGTGTGGGGCTGGCGGCAAGGGGTTTTGGGTGGGTTCACGGAGGGCTCCAGGCGGATCCGGGTTCTATCGGTGAGGCACAGCAGTTGGGCGCTGACTGGGTCCGATCCGGAGCCTGGACTTGGGCGCCGGCAGGCACCGGGGTGGGCGGGATCCTCTGCCGGTGCACGCCGTGGCGGGCTGATACACGGGACACGCTGGCCTTGGAGGCGATAGTCCGGCTGGTTGTCGTGGGGCTGTGGGATCATGGGCAGGGTGTGGAGTCGAGCGGTGAAAGTGAATGAGAATGGGCACTGGCCGCTCTAAACCTGCTGGTCAAGAAGT # Right flank : CGCGTGGCGAAACTCTGTGCCAGATCGGTCTGGCGGTGAGGGGGCTAGAGGGCGGGGGAACGGCCCTCGTAAGGGGTGGAGAGGACGACGGTGGTGCGGGTGGAGACTTTGGCGGATTCGCGGATTTTGCGGAGGAGGTCTTCGAGGTTGGTGGGGGAGGCGACGCGGACTAGGAGGATGTAGGACTCGTCGCCTGCTACGGAGTAGCAGGATTCGATTTCCGGGATGTGTTCGAGGCGTTGGGGGTAGTCGTCGGGGGCGGCGGGGTCGATGGGGGTGAGGGAGATCAAGGCGGTGAGGGGGAGGCCGATGGCCTCGGCGTCGAGGCGGGCCGCGTAGCCGCGGATGACCTCGCGTTGTTCGAGGCGGCGGACGCGCTGGTGGACGGCGGAGACGCTCAGGCCGACGCGTTCGGCGAGGTCGGTGAAGCTGCGTCTGCCGTCGGCGGCGAGCTCGCGGACGATGGCCTTGTCGATGGGTTCCAGTTCGCTCATCCGGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72089-72544 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI519517.1 Actinokineospora inagensis DSM 44258 H504DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72089 29 96.6 32 ............................G TCATGACATCGCAAGGGTAACCAGGAGGGAGG 72150 29 100.0 32 ............................. CAAGGTGGACAGATCGGCGAGGCCGACGAACT 72211 29 100.0 32 ............................. GTCTCGTGCTGCTGCAGATCGGCGACAGCTTC 72272 29 96.6 31 ............................G CCCTGGAACCCCAAAAATCTGCCTGGTCGGC 72332 29 100.0 32 ............................. TCGGTGTACCAGACGAGGCGATCAGCGTGGAG 72393 29 96.6 32 ...C......................... GACCGGTTAACCGCATCCCCGACCGCCACTAC 72454 29 100.0 32 ............................. CCTGATTACATGATCGTCGACATCCTGCCGCA 72515 29 72.4 0 ....C...T.....A.T....TG...T.G | T [72521] ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.3 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : GGTGTGGTTTCCCCAGGTCCATAGGCTGTTCGGTCGGTTGTGTGTCACCCGCCTGGGCGACGGAAGTTATCCACAGGAGGGGCTCTCCGGGGCTTGGATCAAGATCCACTGTCGGTGCCTGCCGGTAGACTGGCATCGAGGGCTGCCCCCGGAGAGGGTGGGGGCCGCCTGTAGGGGGGTGTGGGGTTGGCGGCAAGTGGTTTTTGGAGGTTTCGCGAAGGGCCGGGGCATTGATCCGGGTTTGTTGGTGAGGCGCCGGTGTGGGGTGCTGATTGGGTCGACTCCGGAGCCTGGCCCCTGGGTGTCGTCGGCTGGGTATCGGGGTGGGGTCGTTTGCTGTTTGCGTTTCGTGGTGGGTTGATGCACGGCACGCTGGTGGTCTTGGGTCGATGGCTGGCTGGTTGTCGTGGGGCTGTGGGATCATGGGCAGGGTGTGGGGTCGAGCGGTGAAAGTGAATGAGAATGGGCACTGGCTGCTCTAAACCTGCTGGTCAAGAAGT # Right flank : GGGGCAGGGCCTTGGGTTGTTGCCTGTGGGGAGTCGAGCTTCAGGTTGTGGGGGGTGGGTTCGCTGTGAGGGGGCCGGCCAGGGTGGTGAGGTGGGCGATGACCTCGGGGAGGGGGCGGCGGGTGTCGATTTCCACGGTCGCGGACTGGCGGAGGAGGGGTTCGATGAGGGTGGTGTCGGTGGTGATGCGGGTGCGGTCTGCGGGGGAGTTGCCGTAGGGGTTGGTGGTTCGGTGGGTGACGCGGTCGAGGATCACCGCCAAGGGTGCGGTGAGTAGGACGATGTGGTCGAAGCGGGGGCGGAACACGGCCTGGTTGCGGACGGTGCCGGAGATGAAGAGGGGGTCGCCGGAGTGTTCGTGGGTGGTGATGAGGGCGTCGATGAGGTCTTCGCGCCAGAGGGGGTCTGGGCCGGGGGTGGTCCAGTCGCCGTAGTCGGTGTCGATGGCGACATAACCTAGGCGGGCTAGGGCGGCGAGGGTGGTGGACTTGCCGGTGCCG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77313-76677 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXWW01000017.1 Actinokineospora inagensis DSM 44258 H504DRAFT_scaffold00013.13_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77312 28 100.0 33 ............................ GCACACCCTCCGGCAGGTCATAGCCGCGGACCT 77251 28 100.0 33 ............................ CTGCCCAACCTGCGCACCATCCTGAGTGGACTT 77190 28 100.0 33 ............................ TGTGCTCTCGTCGCCGATTGCCTGATCGGCCTT 77129 28 100.0 33 ............................ GTAGGCGGGGGTGATGGCGACGACGGTCTCGGC 77068 28 100.0 33 ............................ CGACGGGGTCATGAAGATCCCCAACGTGTTCAA 77007 28 100.0 33 ............................ CAGCAGATCAAGCACGCCGAACAAATCCAACAG 76946 28 96.4 33 ............T............... GGGCATCCCCAAGGATGCCTTGGTTCCGTGGGC 76885 28 100.0 33 ............................ CAGCAGATCAAGCACGCCGAACAAATCCAACAG 76824 28 96.4 33 ............T............... GGGCATCCCCAAGGATGCCTTGGTTCCGTGGGC 76763 28 100.0 33 ............................ CCACAATCACCGGCCGCCTAACCACATCAACCA 76702 26 82.1 0 ..........T.....--........GT | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 33 GTCATCCCCGCACGCGCGGGGCTGTTCC # Left flank : CCCAGGCAATCGACGAGACCAACCGCCGCCGCGCCAAGCAGGTCGCGTACAACACCGAACGCGGCATCGACCCGCAGCCGCTGCGCAAGAAGATCGCCGACATCCTCGACCGCGTCTACACCGAGGCCGACGAGTCCGACACCGCGGTCCCCATCGGCGGCTCCGGCCGCAACACCTCCCGAGGCAAACGCGCCACCGGCGAGGCGGGCAACGCCAAGAGCGCGGGCATCGTCGCCGACCGCGACCCCAAATCCATGCCCCGCGCCGAACTCGCCGACCTCGTCCAACAACTCACCGACCAGATGATGAACGCCGCCCGCGACCTCCAGTTCGAACTAGCCGCCCGCCTCCGCGACGAAATCCACGACCTCAAACGCGAACTCCGCGGCATGGACGCCGCAGGCGTGCGCTGAGGGGCTCTGCTGATGGGGATGGGCAAGCCGACCGCGAAAGTGAATGAGAACGGAGGGCTTGGCTTATAGCGCCCCTGGTCATCAAGT # Right flank : CGAAGGGGTGAGCGGCTGCGGTGGTGGCGAGGCTGCTGGTTAACCCGCGAAACGGTTGCCGGGGCTCGACAAACCGCTGGGTGTCAGCAGGGGTTGGTGGCGCAGGGGTGGGTGGTGGGGTCGCCCTGGTGGGTGGCGAGTTTGCGGAGGAGGTCGCGGAGGGTTTCGCGTTCGGTGGGGGTTAGGGGGGTGAGGACTTCGGCCTCGACGGCGTGTAGGGCTGCGGTTGTCTCGGTGTGCCTGCGGTGGCCCGCGTCGGTGGCGGAGAGGAGGCGGGCGCGGCGGTCGGTGGGGTCGGGGCGGCGTTCGACGAGGCCGGTGCGTTCGAGGTCGTCGATGAGGTAGGTCATCACCGTTTTGTCCACGCCGAGGCGGTGGGCGAGGGTCTGCTGGCTGCACGACTCGCCCTCGATGGCGGTGGTGAGGACCTGGTAGCCGCGGGGGCCGCCGGGGAGGCCCGCGAGCACCTGCTCGGCGGCGCGGACATAGCCACGGAAGAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCCCGCACGCGCGGGGCTGTTCC # Alternate repeat : GTCATCCCCGCATGCGCGGGGCTGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACACGCGGGGCTGTTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45682-46319 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXWW01000049.1 Actinokineospora inagensis DSM 44258 H504DRAFT_scaffold00042.42_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 45682 28 100.0 33 ............................ CACCACCGACGCGGTGTTCTTGACCGCGACCAC 45743 28 100.0 33 ............................ CCCGGCCAAACCGATCCGCAGGTCCAACAACCA 45804 27 96.4 33 .....-...................... CAGTCGCGCCTTCGCGAGCGTGTCGGCCACCCG 45864 28 100.0 33 ............................ CGAGCCCGATCGGCGCGCCATGCCCGCCCATCG 45925 28 100.0 33 ............................ CAGACGTACCGCATCGGCTGGGGTGATGGCGTC 45986 28 100.0 34 ............................ CTCTACGAGTTCATCACCGTCATCCGGAAGCTCC 46048 28 100.0 33 ............................ CGGGTGGCGGATCGCGCCGCACGAGTACAGGTG 46109 28 100.0 33 ............................ CAAGTACCTGCGTGACGTGCAGACGCTGGCCAT 46170 28 100.0 33 ............................ CACCGAGCGCGCCTCGTGATCGCGGACCCGATC 46231 28 100.0 33 ............................ GTTGGCCGGTGGCGTAGAGGTCTTCGACGTTCT 46292 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 11 28 99.7 33 GTCGTCCCCGCACACGCGGGGCTGTTCC # Left flank : GCCCCTCACGCAGGTCGTTCGCCCGCTGCGCGGCAGCCTGCCCGCTGGTCTCCCACCACTCCCCCGCCGAGTCCCCGGGAGCGGGCACCATGGCGTTGACCATGATGATCTCGGCCACCGGCACCCGGGTCGCCACAATCGGCGCAGTGAACCCAGCCATCGACTGAGCCACCAGAACCAGGTCGTCGTGGCCGCGCACAGCATCAACCACCGCGTCGGCGTACTCGGCGAAACCGGCCGAGTCGTCTTCGCACGGCAGCGCGGGAGTAATCACCTCGTGGCCGTGTTCGCGCAGCTTGGGGGCCACCAGGCACCAGGACTCCGGACCGGAAGCAGCACCCGGAATCAACACATACGTGCTCATGCCGCGAAGGTAACGCACAGCGGTGACAGAATGATGTCCCGGTGGCGGCCGTCGAGGGGTATGGAGATCGTGGCGGTGGTCGGTGGAAGTGAATGAGAAATGGGGCCGGGCGTTCCAGAGCCGCAGGTCAAGAAGT # Right flank : CACGCGCCCAGCGACCAAGGGCCGCTGCCCCACGCACCGGTACGACCACACTCAAGCTGCCCGCATCGACTTCCCCGCTGAGTTGTCCACAATGCTCGCCGCCGTCCACAGACCGAGCGTCAACCTGTTTCCCCCGCCCCCACCTCGGTAAACTGGCATCGAGGGCTGCCCCCGGGAGGGTGGGGGCCGCCCTGGGGGTGGTGGGGGTGGCTTGTCAAGAGGTGGGGGTGGTTTTCGCTGGATTGGGTGAGGTGGAAGTGGGTGGCTGTCTGAGGGGGTGGGGGCGCCACTGTGTGCGTGGGGCTGTTACCGCTGGTGGGTGGCGGGGGTCAGTCGGCTAGGTCGAGGGCTTTGCGCATGGAGTCGCGGGCTCGGGGGCGGTCGCCTGCGAGGTCGTAGGCGACGGCTAGGCGGTACCAGGAGCGCCAGTCTTCTGGGGCTGCTTCGGTTTCGGCGCGGAAGCGTTCGAAGAACTCGTCGGCGGCGGGGCGGTTGACGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACACGCGGGGCTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACACGCGGGGCTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 66159-67100 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXWW01000010.1 Actinokineospora inagensis DSM 44258 H504DRAFT_scaffold00007.7_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66159 29 100.0 32 ............................. CACCACCGAGATGTTGGCTTGGGGCTTACGGA 66220 29 100.0 32 ............................. CCGCTCGCCTAGGAGAAGACCGGCATGACGCA 66281 29 96.6 32 ............................G TGCACATGTGCACTTGTACAGTGGTCGTGGGT 66342 29 96.6 32 ............................G ATCGGTCGCGGGCTGCCCCATTGTGATCCCTT 66403 29 100.0 32 ............................. ACCGCAGTCGGGGCTGATCGCCGGGTGGCGCG 66464 29 100.0 32 ............................. AGCAGGCTGGCGTAGGTGTGCCGCAGGGTGTG 66525 29 100.0 32 ............................. AACCCGAGTGGTCCGCGACCTCCACCGTCAAC 66586 29 100.0 32 ............................. TTGAGGACGTGCGCGGCCACCACAGCCGGACC 66647 29 96.6 31 ............................A GCTCGGGCAGGCGCTTGGGGTTCCAGCGGTC 66707 29 93.1 32 .....T......T................ CCGGCGACACCCAGCAGCCAGGCCGTGGCCTG 66768 29 96.6 31 ............................G CGAAGTACTTCGCCTGGTCGACCTTGAGCAT 66828 29 96.6 32 .........A................... AGCTTGGCGTCGTAAGTGGGGACGAGGGGGAT 66889 29 93.1 32 ...A........................G TTGACGCGCTCTTTCTCCCGCACCCCGGCGAC 66950 29 89.7 31 ...A......T.................T TGGTCCACAGCGCGAGCGGGCTCGCCCACAC C [66974] 67011 29 86.2 32 ...G......T.TG............... GAGTTCGTCCGGGGCGGATATTTGTGGCTTCC 67072 29 75.9 0 .CGG......T......A......G...G | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.1 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CCCGTACACCCACCTGGCCACCTGCTCCCCCACCCGATTCGGCCGCGTACTCCCGATGATGATGCCGATCCGCGTCATATGCCCAGCCCTCCTGGTCGATTCGTGCCTTTCGGAGCGTACGACGACTTTTGTGCCACCTCGGCTTCCGCGGTGGTGGTTGAACCTCTTTTCGTTGCCCCACCAGGTAAGTGTCGGTCTGTGTCCTGTCCGGACTTCACCCGTCCAGGCGACAAAACTTATCCACAGGCTGGCTCTGTCGGCCCGTTGCCAAGATCCACTGTCGGTGAGGGCCAGTAGACTGGCCTCGGGGACGCCCCCCGGGAAGGGTGGGGGCCGGGCTGCGCCCGGTGGGGCGGCGGTAAGAGGTGGTGGTTGGGGGGTGTGGCTGGGGTAGGGCTGGTAGTTGAGTGGGTTGTGCGATCATGGGCGGGGTGTGGGGGCGGCGGCAGAAAGTGAATGAGAATTGGCGTTGGCCGCTCTGAACCCGCAGGTCAAGAAGT # Right flank : GGACGGCTCGCGGGCTAGTTCGGGTGTTGGTGGGGCCATTGCGGGTGGGGCTCGGCAGCCCCAGCCGGTGAAGGGCGGGGCGGGTGGGGCTGCCGAGGGTTGAGGGGTTAGATGGTGAAGCGGCCGACGATGCCGCGCATGCGTTCGGCGGTGCCTGCGAGTTCGTCGGCGGCGAGGGCGGTCGACACGGCGCCTGCGGTGGTTTGGCGGTTGTCGTCGACGACGGTGGTGATGCCGGTGGCGATGTCGCGGGCGTCGGCGGCGACCTGGCTGATGGCGCGGCTCATGTCGCCGGTGGTGGCGGACTGCTCCTCCACGGCGGCGGCGATGGTGGTTTGGAACTCGTTGATCCGGCCGATGACGGTGGCGATGCCCGCGATGGCGGCGACGGCGGCCCGTGCGTCCGACTGGATCGTCTCGACGCGGGCGGAGATGTCGCCGGTGGCCCGGCTCGTCTCCTGGGCCAGGTCCTTGACCTCGCTGGCGACGACCGCGAAGCC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11378-10861 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXWW01000079.1 Actinokineospora inagensis DSM 44258 H504DRAFT_scaffold00071.71_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11377 29 100.0 32 ............................. CGTCGTGTTTCTTCTCCGCCCATCCCATGGGT 11316 29 100.0 32 ............................. TCCTGCCCGCGTTCTCCAGTCTGGGAAGCATC 11255 29 96.6 32 ............................G CTGCCCGGCTGGGGTCGCCTGGCCGCCGATCC 11194 29 100.0 31 ............................. GCCGCTCACGGGCTTGCCGACAAACGATCAT 11134 29 100.0 32 ............................. TATCGCGCGTAACCCTTTCGAGTGAACAGTGA 11073 29 96.6 32 ............................G GCCGCGTGATGGCCCGGACCCCCATCGGCAAG 11012 29 100.0 32 ............................. TGCACGTGAGGATGCCAGGCGACTTGGTCTCC 10951 29 100.0 32 ............................. ATGTCGTCCGCCCCTGCCGAGCCCGGTCGGTG G [10930] 10889 29 93.1 0 .......G....................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTCCTCCCCGCGCCTGCGGGGCTGTTCCC # Left flank : TTCTTCTTCCCGCAACTGTTCACCCCCCTCACCGGCCCCGACGACGACCGCCTCACCCCCGTCGGCCTCACCCCCGAGGTGGCCACCACCTTCGCCGGCGACTTCGCCGAGAGCTACCAGCAACTCGACGACCAACCGGAATGGTTCAACCAGATCCGCGAGCTGGCCACCAAACTGGGATTCGCGCCGAGCCCGAAGGACTTCAAGAAGAACCCAGATGCCTACCCAGGCTCGATCCGAGAAGCCTCGCAGTTGGTGCGCGTCGCATTGACAGGGTCGACGCGCAGCCCCGACCTGCACGCCATCACCCAGGCGCTCGGGCCGGATGAGGTCTTGCGCCGGTTGCGCGCCTTGGCGAGCTGACCGGTGATCGACCGGCAGACGACTCGCTGGTTCGGTCGGGTGTCAGCGGGGTGTGGGATCGTGTACGGGCGTGGAGCCGGGCGGCAGAAGTGAATGAGAATCGGCGGTGCCCGCTCTAAACCCCCAGGTCAAGAAGC # Right flank : CGACCTGCGGGGCTGTTCTCGTCAGATGCACCCGGTGTGTCCAGTCCTTGGGGTGTCGTCCCCGCAGGCGACGGCTGTGATCGGATCACCCGGTTGACCACTGGTGGCGACGCGGACTCTGGATATCGTTCAGGGGCGTGTCCACCCAGCGAGGAGGCCATGTCCATGACCGCTGTCTCCGCTCGGCTCCGCAGAGGCCGCGACCTCATCGACCCTGATCTGTTCGACCGCGTGGCCAAGCGTGTGGCCGCTGACCATCCGGAGGTCGCCGGTTTCGCGGATAGGATCGTCGATCAAGCGCTCGCGTTTGTGGCCGCTGCCGCAGGTCAACCTCGTGAGGGGCTAGTGCCGAGTCCCCTGGTCGACCTGGCCTGGCACCAGCTTGTCTTGCGCACCAAGGACTACGCGGATCTCTATGATCGGGTCGGGCGATTCGTCCACCACGTACCGGATGACGATCGCGCCGCCACGCAGGACGGTTCCACGTCGTCAGGAGCGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCTGCGGGGCTGTTCCC # Alternate repeat : GTCCTCCCCGCGCCTGCGGGGCTGTTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCCGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13452-14456 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXWW01000079.1 Actinokineospora inagensis DSM 44258 H504DRAFT_scaffold00071.71_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13452 29 100.0 32 ............................. GTCGACCCCGGGGGGTCGGACTACCTGCTGAC 13513 29 100.0 32 ............................. TGCTGCAGCGCCTCGCCCCAGTAGTCGGCTTT 13574 29 100.0 32 ............................. TCCTCGACGACGCCGCCCGCATGCGCGGACGC 13635 29 100.0 33 ............................. TGCCGCGCCATGACGGCGGCGGCCTGGACCTGG 13697 29 96.6 32 ............................A CCGCCGCGGCGGCGCCGCAATCCGAGCTGTAT 13758 29 100.0 32 ............................. ATGGCGAAATCGGCGTCGGCGTTGTCGAAAGT 13819 29 100.0 32 ............................. ACCGCAGTCACCCAAGCCGCCGCCGAAGGCTG 13880 29 100.0 32 ............................. GCCTGGTGCGAACGAGTGGCCGGTGAACACGG 13941 29 100.0 33 ............................. TTCTACGTCGGCGGCTACGACCTGTCCGGCGAC 14003 29 100.0 32 ............................. CACGCCGGGATGGCCGTGTTCCTCACGGGGCA 14064 29 96.6 32 ............................G GCCAGGACGGCGGGGTCGGTCCATTCGGCCAA 14125 29 100.0 32 ............................. GGCCGCGTATACCGGATGACCAGCGGCACGTG 14186 29 100.0 32 ............................. CGGACCCGTCGACACCCGGCTAATGCCCGGCC 14247 29 100.0 32 ............................. GCGTCCGCCTACGTCCTCACCACCAGCAGCAC 14308 27 89.7 32 ............--..............G GCCACGCGGCCGATGACGCGAGCATGGGAGAA 14367 29 89.7 30 ..............T............AG TGCGACGATGTGCGGCATGAAGGCACGGGT T,G [14381,14393] 14428 28 82.8 0 ..TT........-TT.............. | T [14455] ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.4 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CCGCACGAGGTACACCCCACCCGACCGGGTCGACACCTCCCGATTGATCATCGCCGCGTAGATGCCGCCGATGTGCACGAACCCGGTCGGTGAGGGACCAAACCGGGTGACCTTCGCCCCGTCGTCCAGTTGCCTGGCCGGGTAGCGCCGCTCCCAGTGCTCGGGTTCGGGCAGGTCAGCGGGGAACAGGGCATCGATGACCGCGCGGTCCAGCATGGGTGGTCCGTCTCACTTCCGGGGATGTGCCGACAACCGAACCAGGCTAGCAATGGTCCCGAATCCTCTCCCCGGCAACGACCCCGACCTGCCGAGGATGGGTGACCTGGGTCACTCTGCCCCCTTCTGATGGCTGGGGCGCGCCTACCGCAAGGGTCTATGGCGAAGTCTCGAGGGTCCGACTGGCAATCGTGGGGTGTGGGATCATGGACAGCATGTGGCTCTGGGCGGCAGAAGTGAATGAAAATCGGCCCTGGTCGCTCTAAACGTGCAGGTCAAGAAGT # Right flank : CACTGGCCTGGGTGACTGGGGCCTGAAGCGGGGGCACACAAGTGGGCTGAATGGTGGTCGGTATCGCTCGCATTCGTGCTGAGGCGGGCGATGGCGACTTCAATCAGTTCCGTGCACATAGATACCCGTGGCTTGCGGTCGCTCGTGCTCGGTCTACTTGACGCCGCCTGCGGTGAGGCCGGTGACGATTCGGCGTTGGAAGAGGAGGACTAGGATGACGAGGGGGATGGTGACGATTACGCCTGCGGCCATTTGGGTGCCGAAGGGGGAGTCGAATGTGGTGGTTCCGGTGAATTGGCTGGTGATCACCGGTGCTGTCTTCAGTGTGTTGTCGTTTACTACTGACAGGGCGATGATGAACTCGTTCCATGCCGCGATGAAGGTGATGATCGCGGTGGTGAACACGCCCGGTGCGGCCAGTGGGAGAATGACTCGGCGGAAGGCGCCGGTGGGGGTGCAGCCGTCGATTTGGGCGGCTTCTTCCAATTCGGAGGGCATCT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 149450-150148 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXWW01000014.1 Actinokineospora inagensis DSM 44258 H504DRAFT_scaffold00010.10_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 149450 28 96.4 33 ...........G................ CAGTGGTAGGCAGATCAAAATCGGCGTCGCCAC 149511 28 96.4 34 ...........G................ CCCTGCACCCGACCCGCCCGCCACGGCCGCGTCC 149573 28 96.4 33 ...........G................ CGCGTGGCTGGTGTTCCTCGGGGGCGATTACCA 149634 28 96.4 33 ...........G................ CGAAACCTTCCGTGGCACCGGGCTCCTCGCCCG 149695 28 100.0 33 ............................ CAGATGCAACCGGCTGCACCCCACGAAGGGCGG 149756 28 100.0 33 ............................ CGGGGTGAGCGCGCCGCGCAGGTAGGGCCGCAG 149817 28 100.0 33 ............................ CGAGGCCTAGCTGCGACGCCTGTGGGACCCGTC 149878 28 100.0 33 ............................ GATGTGTCCTCCGGCGGAACCTGGGACAGGTCG 149939 28 100.0 33 ............................ CTGATGCCCGAGCTGTCCGCCAAGGGGGAGACC 150000 27 92.9 33 ...........G.........-...... GGTGAGGCCCGGGACCCGGCGGTCGCCGACCGC 150060 28 92.9 33 ........A..G................ GTGCCTGCGAAGCAGCTCACGCGAGAGCACGCA 150121 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 12 28 97.6 33 GTCCTCCCCGCACACGCGGGGCTGTTCC # Left flank : TGGCAACCGAGCCCACACCGGTCAACTGGTCCGTCATCGGCCCCTTCGCAGCCACCGCCATCCTCGCCGCCTGGGACGGCCGCCGCCTGTCAACACTGCTCTCAGCAGCAACGCTGCGCCGCGGTTTCGGTGTCCTGCTCGCCGTGGTCTCCGCCGGAATGCTGATGGACGTCGCCACTACCTGAGCTGCCCGCACTGCCCCGCCGTGTGCGTCCCGGGCAACCGCCCACAACGGCAAGCGCACAAATCGTTGTACTCAGCTTCACTAACCGGCTTAGCAGGACGCGGCGGGGACTGGATCGCGGACATGGCTGTACTCCCGGGAGAGTGGCTGCTGGCTGTACTGGTGACGTACCACCAACGCGCCGAGTTCACGCAGGTGAACCCAGACCAGCCCCAGCGTTGTCGGTGGGTTGTGGGAGCATGGTCTGGGCGCGGGCATGGCGGCAGAAGTGAATGAGAATCGGTGCTCGCCGGGCTAGACACGCAGGTCAAGAAGG # Right flank : CCGGTCCCTCGATCGGATGAGCCCGCACCTGTAGTCCCACCGCTCACGCGCCGTATGATTTGACTCTCATGAGTGGCATGATTTACCGCTGCAATGCGTGCGGACGGTGAAAGGAATCAGACATGCGAGCGACTTGTTCGACCTGTGGCGGTACGGTTTGGTGACCGTCCAGCGGACCGGCTTCGGGAGAGGCAAGCAGTTCGACGACGCGGGCTGGATCGGGCGGGGCGAATGAGCGAGGACGAGCGGGACGACGACGATCCGGACGCGTCTGACGTGCCTGATCTGGTGCAGACCATCTGCCCGATGTGTGGTGGCGGTGGCATGATCGCCGACCCCAAGATGGCGGTGATCGGCGGCGTGGCCCGCACGGTCGACAACGGCCGACCTTGCCCATTGTGCAGCACGGAGGGCCACCTGCCTGGCCTCGTCCCACCCGTCTAGCACGTATCCCCGAGACCTCGCAAAGCTGGGCTCGGAGGTCTGGACCCGGCCCTTCT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACACGCGGGGCTGTTCC # Alternate repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCACACGCGGGGCTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //