Array 1 43432-43098 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFC01000016.1 Levilactobacillus spicheri DSM 15429 NODE_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43431 29 96.6 32 ............................C AAATTGGCATTGAACTGGAGTACCAGCTTAAA 43370 29 100.0 32 ............................. AACCGCCATCGAGGCATGGACGCGGGTAAATC 43309 29 100.0 32 ............................. CGAAGCAACACTAATTGATAAGCTCAATCAGG 43248 29 96.6 32 ............................C TATACGCGAAAATACCGATATTCGCTAACGGC 43187 29 100.0 32 ............................. CAAAGGGAATTTTACCGTTATTTTCCGAGATT 43126 29 79.3 0 ..G.........T..A..........TTC | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GTTCCAGACCTACGCGGCGACCTGTGCGTGGACGCTGGCCATGGCTCACTCACAGAGCCCGACTGCGGCCATTATCCGGGGCTACATCGGCGGTAGCGGCAAGACGCTCGACAGTGAGCTGGCGAAGTTCGCCTGGGCGTACACGGACCAGGTTCAAGCAGATTATCAGAAGTTTTGTGAGTACCGATTAACGGATTAGTGAAAAGCGCAAAATCCCCTGGGACTTGATAAAAATCAAGCCTCAGGGAATTTTTTTCACCTACTCATAGCGATAAACAAAAATATATTGAATGAAGAATGTGTTTTTGCTAGGCATGGAATTGCAGGGGAATCAGTCTAGAAAAGATATTTTTGTGTTGCTTGAGTGGATTCTTCTGGTGGGAGACGTTGCCCTTGGTAGCCGATGGAGAGAGGCGTATGATTTGTTTAATGGGAACCAAGTTAATAAAAAACGGGAATCTTTGATTTTGAAAAGGTTGATATAGCGGGATTTGTTTAGT # Right flank : ATAGTTGGCCTAATTGCTTTTTGATTTACTCTGTTAACAAATTCCTAGACTTTCCTGCGCATATTCTGAAGTAGAAACATTGAGTGGTGACGCAAGATTTTACGATAAGAGTAGCCTGGAATCCCAGTAAATAGCGATATACTAGTGAATTTAGCTCTCTCGCCAGCACAATTAAATTGATGACAATTGATATACTCCCTGATAAACTATAAAAACACTAATCGGGGGAGTTTATAGTTTATGAAGCAGCATCACTTTTTACGACTGGCGGCTAAAGCAGCCTTGACACTCGTCTTAACGAGCACAGCGCTACCACTTATATCGGTTGAGGCATCTAGAGTGCAGATTAAAGAGCCTACAGCTGGGATACAGCCAAGGCAAAATATTAAATTTCAGGGAAAAAAAGCGACGTCTAGATATCTAAGCAATGCCTTTGATTTGGGCGGTTATACGACAGCAAATGGCAGGTGGAAAATCCGAGAGAATCACTTGATACGGTC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13170-12410 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFC01000005.1 Levilactobacillus spicheri DSM 15429 NODE_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13169 29 96.6 32 ............................C GCCGGCGAAAGTTACGTCGTGAGAGCCAAGGA 13108 29 100.0 31 ............................. ACGCCCCGGCACACGATGAAAGTCAATCTGC 13048 29 100.0 32 ............................. CCGTTGGCTTTTCTGCTACCCAGGGGGATGCA 12987 29 96.6 32 ............................C AAGTTTTCGTGTTGCGGGAAGTTCTTCCCGGT 12926 29 96.6 32 ............................C CATTACTTCACCGCCCTTACACCGACCAGGCG 12865 29 96.6 32 ............................C GTTTTATAATCATTTTTATATTCTCGATCAAG 12804 29 100.0 32 ............................. GTATTTATCTTCGGCCATACTGATAAGGGGCA 12743 29 96.6 32 ............................C AGCATACCGCAGAGCGGCGGGCTTTGGAAGGG 12682 29 100.0 32 ............................. ACCACTTTTGGCATCGGATAGATCACGATAAC 12621 29 100.0 32 ............................. AGGTGTGGCCGACGAGGTGCTTAGTGTAATCA 12560 29 100.0 32 ............................. GACGGGCCGGTCAGCGTCGATATTAAAAAGTT 12499 29 93.1 32 ...............A..........T.. TCGGCATCCAAAGACCGATTGCCATCATAAGA 12438 29 75.9 0 ...........G.A....A....T.ATT. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.3 32 GTATTCCCCACACGTGTGGGGGTGATCCT # Left flank : TTCCAGGACGTGATAATATCGATTGGGGCGGTGAAATCGGGGGCCAATGGGGATGGCGACACTCTTTACCGGTTGATTCAGATTGAGCGCCCAGTTCCACCAGCGATTACGAAGCTGACGGGCTTAACAACGGAGATGCTGATGGAGCAGGGAGTGCCGTTAAGTAAAGCTCTGGCAGACCTGCGCCAGTTTGTGGGGTCGGCACTGATTGTCGGGTACAATTACCAGTTTGACGCGTCCTTTTTGGCTAATGGGTTTAGACGCTTGGAGCAAGCTGATTTAACCAATACCACACGGGACCTTTTACCGATTGTGAAAACGGCTAATCAGTTCTTAGATAATTACCGTTTGCCAACGGTGTTGGCGGCTTACGATATTTCAAATGAAACTCCGCATCAGGCTTTGGCGGATGCGCGCGCCACGCTGACCCTCGCACACAAGTTAATGAAAACAGGCGATTTGTCGATTTGAGAATGCCGGTATGACAGGGATCCTTTAGT # Right flank : CAACCTGCTTCCATCTCACCCCTTAGCCACTCATTAGCCGTCTCTTCAAAGAACTGCCGGAAAGCCACATAGGCGTAGCCCTGCCAGGATTGGCGGTTCTTGCGGTAGGCCGCAGGGATGATGCGAGCAATGGCTGTGTGTAGATTTTCGATTAGGACCGAATTATGTTCTAGCCGCGTGGCCAAGCGACCAGAAAGGCCCAGCTGAGCCTCGGCCATGCGACAGACCGCCGCTTTGGCTTGGTAAATCACGCGCGCCATCTCATAGAGTCGTGCGTGGTCATGATCGGCTAAAGCTGCCATTAGCTGAGCTGTTGTCGTGGGGATTCCGCCCACAGTGGTGAGCGATTGGGTTAGATTGGTAAATTCCAAGTGGGTGAGTAATTTTTCAGACGGCTGGCCGACGGATGGGGCTATCTGAGACGAACTTAATGCCGCTTGGTTAGCGCCAGCTGAGGATGATTGTGCGGAAACGCTAATCGCTGGGCGCGTATTAAGTGT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23658-23020 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFC01000005.1 Levilactobacillus spicheri DSM 15429 NODE_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23657 29 96.6 32 ............................T TCGGTTCGCATCGACGAAATGAGCAAACACAC 23596 29 100.0 32 ............................. GACAAGCCAAACAGCCGTTTGAGTGCCAGTGC 23535 29 100.0 32 ............................. TAGCCCACGCTGATGTGCCGTTCCCCATCATG 23474 29 100.0 32 ............................. GATATTAAGGGACTTACGTGGGACGACCTGGC 23413 29 96.6 32 ............................T CCGTGGTCACGAACTGAACGAGCAGCCTATCA 23352 29 96.6 32 ............................T GGCGTTATGCGTTTCACAAGTACAAAAAGCGG 23291 29 100.0 32 ............................. GAAGGTGTACTTCCCCATCATGTGCGCCATGA 23230 29 96.6 32 ............................T GCCCGGCCGCTCTCTGCTGTGATGAGTGGCAC 23169 29 89.7 32 .......................A..T.T GGTGAGGTACCTGTGATTTTATTGTCGGCCCA 23108 29 82.8 32 ............T.....A.....G.TT. TAACAGGGGTCTTTGTCCAGCTTGCAAGCAAA 23047 28 72.4 0 T.......-..T.A......A..A..TT. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 93.8 32 GTATTCCCCACACGTGTGGGGGTGATCCC # Left flank : CCGTTGTCGCCGATTGAGATGGAGACCATCAACGATTGGTTGAAGCAGGACCACTACCAACCGGAGCTGATCCAGTTGGCGCTGAAGGAGTCCGTTTTGAATCAGGTCTATAACTTGAAGTACATGGACCGCATCCTGGGTAACTGGGAGAAGAAAAACTTACGGACGGCCGCGCAGGTCCAACAGGAACGGGCGCGTCAGGCCGACCGGCAGGCACCGAAGGCGGGCGCCCCGGGTAACGGGGGCGATTCAACGATTCCGGACGTGCCGATTTTTAAGTTAACGGATTAGGTGAAGGGGTCGCGATGCGAGAGTACGCGGCCTTTTTTGATGGGAGAATGAGATGAAAATCAGTTTAGACGATATTTTACGTGTCAGGGTGAACAGGGATTGGCATTCGAAGAATTTTTAGGTATGCTGGGGTCATGGTCAAAACACAAGTTAATGAAAAACGGCGATTTTGGAATTTTAAAAGGTTGATATACCGGGATTTGTTTAGT # Right flank : CATCCATTTTCCCCGTCCATCACGTGTATTACGTATTTCCTCCACATGTAAGGGGCAGTATTCTTCATACGAAACAGCAAGTATCCGAGGAAGATTAGATAGAAATGCCTTGAAAGTTCTGAACCTTAACCGAGGATCAGAACTTTTTATGTATCATGGAAACGATGCAAGTCAGCTTAAGCAACTATTTATTTGGCAGAATGCGCTGTGATTGGCAGCCGTAATATTCTAAGGTATGCTAGGCCTACGCTTTAGAACCGAACGTTTTTGCTTCCTGAAAAATTGATGCATTGGAGACTACGGAGTATGAAGAATGTCCTCGAATATGCAACGTGGTACTAAGCGTTAGAAATGAATATTTATTAGAACGTAAACCATTACATTGCAGAATTAGAATAACAGTGTAACTGATAAGCGAACTACTTGTGAAGAGGATTTTCACTGAAATGTTTAAAAGAGGAGCTGATAAAAATGACCCCATCCCTGTTAGCAGCGACTTT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 580023-579139 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFC01000035.1 Levilactobacillus spicheri DSM 15429 NODE_122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 580022 29 96.6 33 ............................T CTGCTGGGCGAATACGTCGACAACACCACTTTG 579960 29 100.0 32 ............................. GGACAGGATCGTCTGACGGTACAGCGTGATAC 579899 29 100.0 33 ............................. AAAGTTAGAGACCGTTAAAGCCAGTTCCTTGTC 579837 29 100.0 32 ............................. GACCCGTACATGGTTCGATACCAAGCTCTGGT 579776 29 100.0 32 ............................. GCCTACACGACGGCGTTGGACGAACGAATCAA 579715 29 100.0 32 ............................. CAGTCTCCGAGTTGGACCTCCAACCCGTCTTT 579654 29 96.6 32 ............................T GTGATTGTCGTTATCTTTAAGACCATCATTGA 579593 29 96.6 32 ............................T AGAGCGTTCGCCGCTAAAAACGGTGTGGAAAT 579532 29 96.6 32 ............................T GATAAATTCACAAAGTTGATTAAAATTCGGGG 579471 29 100.0 32 ............................. CAGGTCAGCCATGACCCGGCCAACTATCCTGA 579410 29 100.0 32 ............................. GATAACGGCAAGCCTGACCCGGTCTCACGCCG 579349 29 96.6 32 ............................T GGTTCGAGGACATGCGGGACACCTTCAGATGG 579288 29 100.0 32 ............................. GAGGCGGCGGCCATGGATGCCAGCTTAATCAA 579227 29 93.1 32 .........................C..G GTTACAGTCAGTAGCAGCGGTCTTAAGGGTAA 579166 28 75.9 0 ...........G.A........A-..TTT | ========== ====== ====== ====== ============================= ================================= ================== 15 29 96.8 32 GTATTCCCCACACGTGTGGGGGTGATCCC # Left flank : TGATTTCACCCCTTAATTTATGTCTGTCAGTAGACTAACTGAAACATTTTGAGAATCTTTGGGGTTGGCGACAGCGTCGGTGCTTCTGAAGCAGTGACTATGTAAGAATTGATTCAGAAGGAACCTCAAAAGATAAATTTATAGATGATTAATTTCACTTCCTCCTATATTTAATAATTAAACATTAACTGATAACACCAATTATAGTATATATTCAATTGATCAATTAGAGCGCTCAAACGGTTCCGTTTAGGGGACGTTTTGACAAAAGTGGGGTCACGGTCAGGAAAAATTGATTGTTTTCGATTAGATATTCCCCCTTCATTGACTGGTTGAGCGCACGATATTTTTCAATGAAGCGATTAAATGCTGATTGGGTAGATGTGATTAGAATTGCTGGTGGGCTAATACGGGCGTATGATGAATGTAGTAAATTGTAAGTTAATGAAAATACGGCAATGATGATTTCTAAAACGTTGATTTAACGGTATTTACTTAGT # Right flank : CTCAGAAGCAAAAGTGACCACCTTTGGAATATTAACGAAAATAGCCTAGAACCCGCCATCGCTTTAACGATAAGGAGTTCTAGGCTATTTATTGTCGTTTTGAATCAATAAACCCACTGGTCGGGTTTCCGGTTTACATATGAACGATTGCGCCACCATCTTTAATGTGAGTGGTCTTCTTAGCGGGATTCTTCAAGCTGTACTTGAAGGCGTTCATCTTTTCTTTTTTGTAGGAAGCATAGTCGGTGAGTAGTAACAACTTGCCCTTACGGTAAAGAACGCTGTCACTATGACCGCCTAAGACCATGCCACTTTTTTGGGTATGGCCCACGATACGGTAGACGTGAGTCCGCAGCTTCTTATACTTAAGATTGACCGTCTTTATTTGGGACATATTGGAATATTGAATGATGTAGTGCTTGCTAGCAATCTTGTAAAAGTAGCCGAATCCCTCAGCTGAGCTGGTTCGCTTACCTTGGTAAGTGCCCCGTAAGACCTTA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //