Array 1 167870-167725 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPXW01000056.1 Escherichia coli strain RUSPBB228 NODE_93_length_202978_cov_88.087151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 167869 28 100.0 33 ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC 167808 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT 167752 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================= ================== 3 28 92.9 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCACTGGATAAAGCGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAACTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGT # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1508-1916 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPXW01000165.1 Escherichia coli strain RUSPBB228 NODE_1632_length_1952_cov_82.445694, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1508 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTC 1569 29 93.1 38 ...........................NN NNNNNNNNACGACAGAGGGATTCGGCAGCGAAGAGGAT 1636 29 100.0 32 ............................. CGGCTTATTGCTCTTGCCGACGGATTACAGTG 1697 29 100.0 32 ............................. GGCTGGTGGGTTCGGGTAACTGGTTTGCTGTC 1758 29 86.2 36 .........................NNNN NNNNNNCGCGCGCGGGCTACTGCACTCGGTGATAAC 1823 29 89.7 36 ..........................NNN NNNNNNNATGTTGATGACGTTTGCCAAATGCCATGG 1888 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 95.6 34 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCAGAAAACATGAAAAAACTTTGGGAGGGGATGAGTTCCCATAAGCGCTAACTTAAGGGTTGAACC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93925-92908 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPXW01000164.1 Escherichia coli strain RUSPBB228 NODE_1355_length_120850_cov_91.804367, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 93924 29 96.6 32 N............................ CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 93863 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 93802 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 93741 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 93680 29 100.0 38 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCNNNNNNNN 93613 29 93.1 32 NN........................... GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 93552 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 93491 29 100.0 38 ............................. TCATGAATATGGGGAAAACGAACAATCTGNNNNNNNNN 93424 29 96.6 32 N............................ GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 93363 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 93302 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 93241 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 93180 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 93119 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 93058 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 92997 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 92936 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 98.8 33 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCTGGCGCGGGGAACTCCCCCGGAGACTGGCGCAACAATCCCGACCACGCGGTTTATCCCCGCTGGCGCGGGGAACTCTAATCTCGTTTGACGATTTCATTGCTGAAGANNNNNNNNNNGGTTTATCCCCGCTGGCGCGGGGAACTCTAGAAATGACTAAAAACGCGAGGCGGCGTNNNNNNNNNNGGTTTATCCCCGCTGGCGCGGGGAACTCGCTGCGCTCACCGTCGCCAGCTTTTTCCAGTACGGTTTATCCCCGCTGGCGCGGGGAACTCCATTAATTGGGAACGCCTCATCACTGCCACCGCGGTTTATCCCCGCTGGCGCGGGGAACTCACGTCAACCTCTTTGAGGCTGGCTGTGATGATCGGTTTATCCCCGCTGGCGCGGGGAACTCGGTGAACCCCATCACCAAGAACATGAAGCCGTCGGTTTATCCCCGCTGGCGCGGGGAACTCTCATCGGGATGATCGCTATACCAGGCGTNNNNNNNNN # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93962-94797 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPXW01000164.1 Escherichia coli strain RUSPBB228 NODE_1355_length_120850_cov_91.804367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 93962 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 94023 29 100.0 32 ............................. ATCATCACAGCCAGCCTCAAAGAGGTTGACGT 94084 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 94145 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 94206 29 96.6 38 ............................N NNNNNNNNNACGCCGCCTCGCGTTTTTAGTCATTTCTA 94273 29 96.6 40 ............................N NNNNNNNNNTCTTCAGCAATGAAATCGTCAAACGAGATTA 94342 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 94403 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 94464 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 94525 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 94586 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 94647 29 96.6 32 ...C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 94708 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 94769 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ======================================== ================== 14 29 98.3 33 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGGTTTATCCCCGCTGGCGCGGGGAACTCCGGAACTGGTCCAGCGTTAACCGGCGGCGGATCGGTTTATCCCCGCTGGCGCGGGGAACTCTGTTGCAGCGGCGCACCGCTGACGGACTCGCCCGGTTTATCCCCGCTGGCGCGGGGAACNNNNNNNNNNGCTCAATAATGCCGCCGCGAACTCCAACGCCGGTTTATCCCCGCTGGCGCGGGGAACTCTTCATTATAAAAATCCATTTTGATTAAAGACTCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCCGGATGCTGATCGATACCGCGCATCACCGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAAACCACCGGACCTGACCATTTGAAATGAGCCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCGCGCCCCATTTAACGCCGCTGCCGACGGCGGTTTATCCCCGCTGGCGCGGGGAACTNNNNNNNNNNACGCCTGGTATAGCGATCATCCCGATGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 120410-120880 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPXW01000164.1 Escherichia coli strain RUSPBB228 NODE_1355_length_120850_cov_91.804367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 120410 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 120471 29 100.0 32 ............................. AACTGCTGGAATTGTTTGATCAATTACCGGAC 120532 29 96.6 42 ............................N NNNNNNNNNCTGATCACATCATGTTTATTCGCGGTCGTATTG 120603 29 100.0 32 ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 120664 29 89.7 37 ..........................NNN NNNNNNNCACTCAAAATAGTAAATTAATTTATGAATT 120730 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 120791 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 120852 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 8 29 98.3 34 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGAGAGTTCCCCGCGCCAGCGGGGATANNNNNNNNNNAAAATGCGACGACCGCAGCCATTCCGATCT # Right flank : | # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //