Array 1 61406-59670 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYU010000017.1 Corynebacterium diphtheriae isolate YEM0046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61405 29 96.6 32 ............................C GGAAAAGCAGCCATGGCTCGTCCAGATGAACA 61344 29 96.6 32 ............................C AAGTCGTACCGCCGTACGGGGGCAAATGCCCC 61283 29 100.0 32 ............................. ACCAGGCAGAAGCCGTAAAAAAGCTAGCAGAA 61222 29 100.0 32 ............................. CTAGAACATGACCTAGCATTGGATTGTATTTA 61161 29 96.6 32 ............................C TACTCGCGTAAAAACGATTTTACACTATGGTG 61100 29 96.6 32 ............................C CGTGGCGGGCCCGTCTTTGAGGAAGTTTTTTG 61039 29 100.0 32 ............................. CGCGTCACCTTAAGCTCCTCCTCATCGAGGTT 60978 29 100.0 32 ............................. ACGGGTGGTGTGGGGTATTTTTTTCACCCCAC 60917 29 96.6 32 ............................T CACCACATTGCCCTCATAACTGGATTGCTCTA 60856 29 100.0 32 ............................. GTTAGTTCCGCCCAGTCTCGTCACCCCACGCC 60795 29 96.6 32 ............................C GCTAGACCACCGCCCGTGTTGTAGATGCGGAG 60734 29 100.0 32 ............................. CCCTAGGATCTCACTCTTGTTGTGGGTGTGTG 60673 29 96.6 32 ............................C CCACGAAGGGTCTGATGACAAGACCACAAAAG 60612 29 100.0 32 ............................. TGCAGTGATGAAGTCTAGAAGGCAGGAATTAC 60551 29 100.0 32 ............................. CCGCAAAGATCGCTAAATCTAAGGCGCTGACC 60490 29 100.0 32 ............................. CTCCGTCTCGAACTGGCGTTTTAGCCCGCGAA 60429 29 100.0 32 ............................. TGAGTTTCTGTAGATCAATATCCATATGTTTT 60368 29 96.6 32 ............................C CGGCCGGTCAAGGGGGCTCCAAGCTCCCTCGC 60307 29 100.0 32 ............................. CGGGGTATTATCGCGGTCGATTCGGCGGCACA 60246 29 100.0 32 ............................. GTCATGGTGGTGAAGGAAGCTCGTCGAGACGG 60185 29 100.0 32 ............................. TGAGTTTCTGTAGATCAATATCCATATGTTTT 60124 29 96.6 32 ............................C ATCGGCCGGTAGTGGGTCGCCTTCCGCGCCCC 60063 29 96.6 32 ............................C AGCTTGACTTCCGCCAAATCGTCGGGAAGCTT 60002 29 96.6 32 ............................C ACCGCAGCACCCGGCGCGATATCCGCCGTGAA 59941 29 96.6 32 ............................C ATCGGCCGGTAGTGGGTCGCCTTCCGCGCCCC 59880 29 96.6 32 ............................C AGCTTGACTTCCGCCAAATCGTCGGGAAGCTT 59819 29 96.6 32 ............................C AGATCGTTAAACCAATCTGCTTGCTTTGCGGA 59758 29 100.0 32 ............................. ACGACCGTGGGAACCGCGAGGATAAATAGCAG 59697 28 93.1 0 ........-...................C | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.1 32 GTTTTCCCCGCACCAGCGGGGATGAGCCG # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGCAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCGTAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //