Array 1 2151-2509 **** Predicted by CRISPRDetect 2.4 *** >NZ_AORM01000055.1 Clostridium botulinum CB11/1-1 CB_contig0014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2151 30 100.0 37 .............................. GGAATTAGAAGAAAAAAGCCAATCAATAAAAGATATT 2218 30 100.0 35 .............................. CTAGTAGTCTTTAAAGGTTCATCACCTAATTCTAT 2283 30 100.0 36 .............................. TATGAAGAAAAATCAGCTCCAACAAATAAGTTTAAT 2349 30 100.0 35 .............................. TAAATAATATGGATAGAGATATTGCAGAAGGTTTA 2414 30 100.0 36 .............................. ATTAAAACTTGCCACTCAGGATATGTAAATGCTATT 2480 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 36 GATTAACATTAACATGGGATGTATTTAAAT # Left flank : TTGATGAGTAAAATTAGTAATTATAATTATGCTTTTGTTTTTTATGATGTAAATGAAAAACGTGTAAATAAAGTTTTTAAAGTATGTAAAAAATATCTATCACATTTTCAAAAATCTGTATTTAGAGGAGAAATGTCACCATCTAAATTAATAAGGTTTAAAAAGGATATAAATTCAGTAATAGATAAAACTGAAGACTTTATATGTATAATAAAATTAATGAATGATAATGTTTTTGGAGAAGAGACATTAGGGGTAACATCAAATGCAACAGGAGAGGATTTAATAATATGAATTATAATAAATTATTAAATAATTCTATATTTTTACCAGGTTATTATTCTAATGAAGTCATTTAAAAGGTAGGTAAACACAAGGATTCAGCAATGCTGAATAAGGTTTATTTAATATGTAAAAATCACTTGGTAAAATTTTTATAATATGTTACTATTACTGTATTAGAGAGATTTTGTTATTTTAAGAATGGCTTATTTTCAATG # Right flank : TTATCTAAATTAAATACAACTACAAAAGTAGCTAGATTAACATTAACATGGGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 38-590 **** Predicted by CRISPRDetect 2.4 *** >NZ_AORM01000058.1 Clostridium botulinum CB11/1-1 CB_contig00152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38 30 100.0 34 .............................. TTAACAAAAGTTTTAAAAAAATTAACACAATTAT 102 30 100.0 36 .............................. ATAAATCAATATTACTAAGTTCCATTATTCCATTCC 168 30 100.0 36 .............................. AGAATTACAAAGAGAGTTTTAATATAGCAGATATAG 234 30 100.0 34 .............................. GATAAGGCAAGATTTAATTCAACATGGTTATATA 298 30 100.0 37 .............................. TTCCTTGATTTATCTTTAACTCTTAATGCAGGTATAA 365 30 100.0 35 .............................. TTTATCATAAACATTTTGCCCATTTCTGTCTGAGC 430 30 100.0 35 .............................. CGAAAAGGAATAAAATAAAAGTGTAAACTTCACAA 495 30 100.0 36 .............................. CTATTTTGTGAATACATAGTATTCCATTGTTCTTTA 561 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : TGAAAGAATAAGCATGGAATTAATCAACCATACATCCG # Right flank : AATCTTTTAAAATCTTTAAGCATGTCTCTTAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 16009-17675 **** Predicted by CRISPRDetect 2.4 *** >NZ_AORM01000030.1 Clostridium botulinum CB11/1-1 CB_contig00127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16009 30 100.0 36 .............................. GTTGAAATTAGATTATTTTCTGTCATTCCTTTAAGT 16075 30 100.0 34 .............................. AATTCAAAATCTATTTCGTAGTTTAATGAATCTC 16139 30 100.0 37 .............................. TCAATTATCTTGTTATATTATGGTAACAAAATTTTTA 16206 30 100.0 35 .............................. AAAATTTGCTAGTAGAGTAAGACTAGGAAAGTTAG 16271 30 100.0 36 .............................. GGAACTGGATAGTTCGCAAGATGAAGAAAAAAGAAA 16337 30 100.0 36 .............................. AAAAAAGAGTTTAGAAGTATTATAGGGATTAAGGAT 16403 30 100.0 35 .............................. TATTAACACTTTGTTGCAACTTACAATTACGCAAT 16468 30 100.0 36 .............................. AATGTAGATGACCAATCAAGTGAAGTTGCAATTTTA 16534 30 100.0 35 .............................. TCTACACCAGCAATTGCATAAGTTTTTTTTGGAAA 16599 30 100.0 36 .............................. GAAATAGATAATATTAAAATTGAAGATATTAACTGG 16665 30 100.0 36 .............................. GCGTCCATATATTCTAGGTACATTACAAATAACTTT 16731 30 100.0 35 .............................. TTATGTAGAGATTACATAATTTAAAGTAGACATAA 16796 30 100.0 36 .............................. TAACTGTACCTACTCCTGACTTTGAAGAACCGCAAG 16862 30 100.0 37 .............................. ATAATAGCAGTATCTTCACCGCCACTTATTACCAAAA 16929 30 100.0 34 .............................. GATTTTTTATCAAAACAACTAAAAGAATTAAAAA 16993 30 100.0 36 .............................. CCGTAGAGAACCAAGAGAAATAAATGAAAGAATCAC 17059 30 100.0 35 .............................. AGGTAATAAAAATCTAAAATTAGCAATTGAAAATG 17124 30 100.0 33 .............................. ATGTTGCGAATGTCTTTGCACTTGTTACTGCAA 17187 30 100.0 36 .............................. TGTTTTAATGTTCCTTCAACTCTCTTTGCTAATATT 17253 30 100.0 35 .............................. GAATCAACTACAATCCCTAATCTAGTTAATAAATT 17318 30 100.0 36 .............................. CGTATTGATATAAAATCTATATTTAATAACTTTAAT 17384 30 100.0 34 .............................. AGAAGTACAAATTAATTAATTGACTAAAAAAAGA 17448 30 100.0 36 .............................. GTTAGAATTTATGTGGTCTGAACTTACTGGTGAAAA 17514 30 100.0 36 .............................. TAATCTAAATGTATTGCTAATTCTTTCGCTATCTTT 17580 30 100.0 36 .............................. AATTCTAGTGTCTGCTGTTCCTTCATCCACCGACTA 17646 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 100.0 36 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AGACAGTGCAGAAGATATATTTAATAAAGTTAATGATTATATTTTAGACGGAATGCCATGCGATAGAGTAAATGAAATTATAAATAGCAATGAAAATTGTGTGAAATGGACTAGAAGAATTTGTGTACATAAAGAAATTTGGGATAAAGAAAGTGGAAATGTAGAGTACTTTTATTTCCTAAGGAGTTTATGGATTAAAGCTTTTGTAAATGAAATAAATACTGAATTTGATTATTTAGAAGACAGTAAAGGGGTAAAATCTATAAGAAGAAAATAAAGATTTTTATAAAAATATACATTTGTAATTTAAGACAAGCTTTATTATTTTACCAGGCAATTATTTTAATGAAATCCTATTAAACCTAGATAAATACAAGGATTATATATAATACAATAGGTTGTTATCAATATTATAAAATCACTTGGTAAAATATTGATAATATGTTACTATTACTGTATTAGAGCGATTTTATTATTTTAAGAATGGCTTATTTTCAATG # Right flank : AAAAAATAGTGCATTAGAAAGTGAATATAAACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 8726-7200 **** Predicted by CRISPRDetect 2.4 *** >NZ_AORM01000156.1 Clostridium botulinum CB11/1-1 CB_contig0086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 8725 30 100.0 35 .............................. TTTTTCTAAACTCCCTTTAAATAAATTTCTTTAGC 8660 30 100.0 35 .............................. AAATTTAGGTATATTTTTTAAAAATAGTATTTACA 8595 30 100.0 36 .............................. AATTTATAATTTACGTTAAAAAGCTTTGCTTTTTAG 8529 30 100.0 34 .............................. GAAATGGCAAGACTTGTTACATTAGAGATGGAAA 8465 30 100.0 35 .............................. GTAAATGGGAAGATACTTGTATAAATGATTCTACC 8400 30 100.0 34 .............................. TTCCCCTTTTATAATAATATTTAAGTTCTTTTAA 8336 30 100.0 35 .............................. TTAATTTTCTCTTTGTTTATGCTCCAACTATTATA 8271 30 100.0 35 .............................. TACAATGCATATAAAGAAATTATACCTATAAATAG 8206 30 100.0 35 .............................. TCTTTCATAACATCCATTACTGATAATATAGAATT 8141 30 100.0 35 .............................. CTTGTTATAACTCCCGCAGTTGCCTCTAAAAAAAC 8076 30 100.0 35 .............................. AAGTATACAACACAATCTCCACCTTTATATGCGTT 8011 30 100.0 35 .............................. ATTATTATAACTTTTACTGTTCCATTTCCCGCCCA 7946 30 100.0 35 .............................. TAGAGAAAATGCTTTTGAAGGCAAAGGTAATAATG 7881 30 100.0 35 .............................. GCAATAGGCTTAAAACACTATTTAGCGGATGCAGA 7816 30 100.0 36 .............................. CCCTTTCTGACTATTGTACATTTAAAACTTTAACTA 7750 30 100.0 36 .............................. ACTTCCCAATCTTTAGTGTAAACATCGTTTACCTTT 7684 30 100.0 36 .............................. GGCCACATTCTTTTGTCCCACAGTTTACCACGTAAG 7618 30 96.7 35 ................A............. TCTTGAATAGTAATATAATCATAGTTGTTTAAAGT 7553 30 96.7 34 ................A............. AAAATATATATGGAACTAAAGAGGGATTTAACAT 7489 30 96.7 36 ................A............. AAAGCTGGTATAACTGTAATAGTTTCCCCACCAGTT 7423 30 93.3 35 ...............TA............. CCTTCAATTAGTCCCAATGTTTTAGATTCTAATCT 7358 30 100.0 35 .............................. TCTCTTTTAAAACTTATAGGAATTTTCATTTTGTC 7293 30 100.0 34 .............................. AATAGCAGGCAATAGATTAGCACCAATAGGGTGT 7229 30 96.7 0 ...............A.............. | ========== ====== ====== ====== ============================== ==================================== ================== 24 30 99.2 35 GATTAACATTAACATGGGATGTATTTAAAT # Left flank : GATGTATTTAAATCCTGTATTTTCACCTGTATTTTCCCAAACATTAT # Right flank : CCATAATATACTGGTGTTGTTATGAAGAATAAGCCTAACCTAAATTTTAGATTGGGCTAAATATTACTAAATAGAATAAAACATTAATTAAAAATATTTTTATCAAACATTTCTATAAAATTACATGAAATATTTGATAGAGGTTTATTTTTAGGCCATATTAATCTTAGATATGACTCAATTGATGGTTCTATTATCTTTTTTATCTTTAGATTAACATTGGGTAAGATATTAGAAGCAGTAAGTGGTAAAATAGAAATTCCAATTCCAGCTTCAGCCCAACTTAAAGAGGTAATAATATCATCATTCTTACATATTATATGTGGTTCAAAGCCTGCCTTATTACAAGCATTTTTTATAACATCATCGTATCTTCTATTAATTATTAATGGCTTATCTTTTAATTCGTTAATGAGAATAGTGTTACTTTCTATAGAATTATAGAATTTAGATTTTGCAATTGTAACAAAATAGTCATTTAAATTATTTTCAAGGTTATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 10035-8989 **** Predicted by CRISPRDetect 2.4 *** >NZ_AORM01000151.1 Clostridium botulinum CB11/1-1 CB_contig0081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10034 30 90.0 34 T..........C...........G...... AATTAACCACGAAACTAGGACTAACGCCCTGCCG 9970 30 100.0 34 .............................. CTGCAGGAAATACACCTTGTCCTACCCCACTAAA 9906 30 100.0 36 .............................. GAACACATATTGGACATATAATAGTATCCATGTTTT 9840 30 100.0 36 .............................. TAAATTAACATCATTGAAAACAGAAGGAATTAAGGC 9774 30 100.0 34 .............................. CTAAAGCTGGTAGTAATGATGATATTATAGATAC 9710 30 100.0 34 .............................. GAAATGCTACTGGATGGTGGCATTGCTATGACTA 9646 30 100.0 36 .............................. AAGCCTTTGTTCTGCTCAAACAAATCATCTGGAACA 9580 30 100.0 36 .............................. AATTAATTCAATAAGGTATTTTAGACCTAAATATAT 9514 30 100.0 37 .............................. TATTTTCATCTATAGTTGCTTTTAATTCTTTGACTTC 9447 30 100.0 36 .............................. TTCTCCATTATGGAATGTTCCACCAAGACCTATTCT 9381 30 100.0 36 .............................. TTCTAATCTATTTTCAACATATTTAATATAATTATT 9315 30 100.0 37 .............................. TTAGACCAAGTTAAAAGGTTTATACCTAGTAATCAAG 9248 30 100.0 36 .............................. TCTCTCAAAATCGCAACAGAGAGAAGGAATAAATAG 9182 30 100.0 36 .............................. TATGGCTAGGAATACAACTATTGATGGCTATTATGT 9116 30 100.0 36 .............................. TATAGAAGGGAGTTGTAAAAAAATGTCATTAAAAAA 9050 30 100.0 1 .............................. C Deletion [9020] 9019 30 76.7 0 T......A...G...T.C...A.....G.. | T [8991] ========== ====== ====== ====== ============================== ===================================== ================== 17 30 98.0 34 ATTTAAATACATCTACTGTTATTATTCAAT # Left flank : CTCCCCATTTTAATGATTGACCACCTCAGTCATGTAAAGTCTATCAAATAAGAAGTTTTTCATGAGTGTACAACTAAAACCTATCTCTATATTTATATAAACAATCTAAATAGATTGAATATAGCAACTAATTTTTCTTAAAATAAAAAAATCCCTAAGAACATTAATTATTAATTTCTTAGAGATTAAATCACTCTTATTATTAATTATCACTCATATAAATATGAGTTAAAATTTATTTTTTACTTATTTAGTATATCATAATAATTAAATTCTTACAATATGATACTTACACTCCTCATAACTTACCATTATTATAATATATCTTTATATATAAAGCTAAAAACTGTTCATACTTCCGATTTGGTAATGTGTTAATAAACTACCAAATAAAAATTAAATATGAATTACTAATATAGCTTGTACTTATTAAATCTTTAAAGCACATAATACTTATTTTAGGACATATTAAAGTTATATAGTTTTAGTATTTGTAAAAA # Right flank : TTTTCTATAAACAACTTAATTACTAGCTTTACTAAATATTTTACCAAGTAAACTTAAATAATCTTTATTATGTAAATATCATTTAATAAAGATAGAATTATCAACGTATCACATAAAATTTATTTAAAATCACTTGGTAAAATAGTATTGAATTTTGAGTTTTAAGTTATATAAATACGAATATTAGTAGTTCTAAATTATTAAATTCCCTTGAAATCTATCAAATATTTCCTTATTGAATTTATATTCTGAATTTATAATTGTAGAAATCTCATCTTCTGTTAACATTAAGCAATATATTCCTGTAATACATTCATAGCAAATATCTTTACTAATTAGCATATCTTCAAATTGCTCTATACTTCCTTTAAAACTATATTTATAGCAAAAATAACTTAAATCACACATGGAATTTTTAATATCAATTTTCTTTTTAGCATAATTATTTCCCTTAAAACTATCTTTGAATTTATTCCAAATATTTTTACCTTTCATATTTA # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTACTGTTATTATTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 35-588 **** Predicted by CRISPRDetect 2.4 *** >NZ_AORM01000018.1 Clostridium botulinum CB11/1-1 CB_contig00116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 35 30 100.0 37 .............................. ATAGTTACACGTCATTTTTTACGTGTCATTTTTTCTA 102 30 100.0 35 .............................. AAAGTGGAGTATATTAGATTTATTAGCTAGTGGAG 167 30 100.0 36 .............................. TAGATGAAGAATGGCAGGCAATAACAAGAGGTTTAC 233 30 100.0 37 .............................. TTTGTCCTTCACTCAAATTAGACATCCAATCAGCTAT 300 30 100.0 35 .............................. ACTCCACGTAGTGCCGTAGGGAAGGGTTTACTATA 365 30 100.0 35 .............................. GGAACTGGTGCACCAAGTGCTGCACAATTTTCTAT 430 30 93.3 35 ...............A.C............ ACACTTAATTCAATTGCATCATCTCTTTTTTCCAT 495 30 100.0 34 .............................. AATAGAAGCTTTTGAAAAGCATATGGAAAGAGAA 559 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.9 36 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : CGGCGAAGGTATGTTTTTTTAAAAAGTATGCTTGG # Right flank : AAATTTTTTAGAGTATTTATTTTTAATAAAATATCTAGAAATAAAAAAGAAATATTATAATTATAAAAAAGAAAGAGGATGAAAATTAAAAAATTACTGTTGATTGGATAATAAGATAACATTAGATATAACAAGGTAAGAAGAATGGATTAAACAAGAGAAATTAGATATAATAAGAAATTTATACTAAATACTTTAGACAATAAAACATATAGAATAGCAATAAAATTGAGTTGATAGAAAACTAAGAGATGATCTTGGATGAAAGAGCATAATTAATGTTTTGTAAAAAATGAGGTTGTACTAATTGTGTTTTTAACTTAATTAGTACAACTTTTTTGTATCCTTAATTATTTTAAAATAATTAAGGATTATTATTGTATTTAGAATACCACCAAAGTTAAGTGTTTCACAATTTATGGGATATTTGAAAGGAAAAAGTTCATTGATGATTTTTGATAGACATGCAAACTTAAAATATAAGTATGGCAATAGACAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 67100-66222 **** Predicted by CRISPRDetect 2.4 *** >NZ_AORM01000165.1 Clostridium botulinum CB11/1-1 CB_contig0094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 67099 30 100.0 35 .............................. AGCTTATTATCTTGTGTAACTGTTACCGATACTTC 67034 30 100.0 34 .............................. GAAAAATATAATGTTAAATATGATTTATTAAAAG 66970 30 100.0 38 .............................. ACAGCAGTATGTGCCATCTGTAAAGATTTTCCCGAACC 66902 30 100.0 34 .............................. GAGATTTTAAAAAGCAAGCTAAAAAAGCAGGTTA 66838 30 100.0 34 .............................. GTCACAACAGCATTTACACGTCTTGGAGCAATAG 66774 30 100.0 35 .............................. TTAACTTCTGTTATAGAAGTAGAACTTTCATTTTC 66709 30 100.0 35 .............................. TCTATTGGAATAGCTCTATCTTCATTTAATCTTCT 66644 30 100.0 36 .............................. TCTGTTAACACATTTGTATAAAACTTTACAATATCT 66578 30 100.0 34 .............................. GCCGATATTGTTGATGGTCTTTGTTATGTTGATA 66514 30 100.0 34 .............................. AGCCTACACATTCTAAGCCTATTCCAAAAATCCA 66450 30 100.0 36 .............................. GGTTTATTATTCTTACCAGGCACAATACCATATTCA 66384 30 100.0 37 .............................. AATCCATCCTTGCACTCTTGGCAAATATCTTCTCCAT 66317 30 100.0 35 .............................. AAGCCAGCATCTAAAGTATTACAGGCAATTTATAG 66252 30 90.0 0 .................T.....G.....G | G [66224] ========== ====== ====== ====== ============================== ====================================== ================== 14 30 99.3 35 GTTTAACCTTAACATGAGATGTATTTAAAT # Left flank : AAGGCAGAGAAGAAGGAGAAAAAATTAAGGCGCTAGAAATAGCAAAAAATTTACTAGATATCTTAGATAATAAAACAATAGCAATAAAAACTGGATTAACAGAAGAAGAAATAGATGCTCTTAGAAAAAAAGAAGTTAATTAGTGTTTTTTAAAAACATTTAAGATTTAGTTATCCTTGACAAAGTATCCCATTTAAAGAGTTATAATGATTTTTTTAATTGTTATAGCTCTTTATTTTTCTCCGAAAAATAAAGAGATTAAGCTCAAATTTACTTTAAGAATTGTAAAAATAAAGTAAGTTAGCTATAATATTAAGCATTCTATTTTACCAGCCATAAATTTATATAAAATCCCTTAATCCATTGAAATTACAGCGCTAAAGTGACCTTTTAAAAATTTTCTGAAAATTTTATAAATGGCTGGGAAAGTTTCATTGAAACCTTGAAGTTTCAATGCCTTAATGGTATTATTGATTTTAGAGAATGAGGATTTTACTATG # Right flank : AAAAGGGCATGCTAATAACTAATAGAATGGCTGCAATGATTGGTTCATTGCAAGAATAAATATTAAAATGTATTATTGAAATTGTTTATATATAATGGGGGAAAAAAATGACTGAAATACAAATGTGGAATGAATATATTAAAATTAATACTAATGCAAAAGAGTATCAATCATGGTCATTTGGTGGAAATACACCTGAAATGCCAAATTTGTTGGCTGAATTAGTATTAAAGGGGATTAAAACTGCAACTGCTAGTGCATATCCTTGTTATATTGCAGAAAATGCTCCATTACCACCAGTTGGAGGATATAATTTGATATTAAATACAAAAGGTGAGGCTATTTGTATCATAGAAACTACAAAAGTATATACAATACCATTTAACCAAGTTAAGGAGGATCATGCGTATAAAGAAGGTGAATTTGATCGTACACTTATATCTTGGAGAAAATGTCATTCTAAATTTTTTTCTATGGAATTAAAAGAGATTGGTCAAGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 71021-70795 **** Predicted by CRISPRDetect 2.4 *** >NZ_AORM01000165.1 Clostridium botulinum CB11/1-1 CB_contig0094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 71020 30 100.0 35 .............................. TCCACACTAGTAATGGCATATGTTTTCGTTGGAAA 70955 30 100.0 36 .............................. GCAAATATTCCAAGAAGCAATCAGATTAGATTGCAC 70889 30 100.0 35 .............................. ACTTATTTGTATGCCTTTATTTGGGATTGTAGATT 70824 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : GCTCAGTCGGTAGAGCACATGACTTTTAATCATGGTGTCCCGGGTTCGATTCCCGGGTGAGCCACCAAAATATTGTCCAAAGTAGAAATGTGAGTTTTTACTTTGGATTTTTTTTATTTTAGAGGAATAAAATATAATATTGATTAGATATTTTAGATAATAAAACAATAGCAATAAAAACGGGATTAACAGAAGAAATAGATGCTCTTAGAAAAAAGAAGGTAATTAGTATTTTTTAGAAACACTTAGAATTTAATTATCTTAGTTTTTTTTCTGTACAATTCTATTAAAGTGTATAATTTAACTAGAATAGTAAATATTCTATTTTACCAGCCATAAATTTATATAAAATCCCTTAATCCATTGAAATTACTGGGCTAAGGTTGCCATTGAAAATTTTTATTGAAATTTCACAAACGGTTGGTAAAGTTTCCTTGAAACCTTGAAGTTTCAATGCCTTAGTGGTATTATTGATTTAAGAGAATGGCTATTTTACTGTG # Right flank : AGAGCATTAGATAGTATTTTTATTGCCTTTGGAGAGGGCTTAACATTAAAACATCCTTATAGCTATAACTTAGTTTTGTAGCTATAAGGATGTTTTTTTACTCTTAATAATGTAACAAAATATGTTATACTTGAAAAAAACAAATTGTAATTTGCATGGGAGAATACAAAAATGAGCAAATTGACTAAATATATTGAAGATTTAAGAAAAAAGTATGGGGATGCAATAGTAACAAAAGAAAGTCATTATGATGATATGATGCTTTTAAAGGTACCTGAGCCATTGAGGGAATTTTATAGGGAATATGAAAGTTTAGAAATGCCTTTTGGAATTATTGACTCTATCGAAATCAGTATAAGATCTTCAGAAGCAGAACCCTTTAAAAGTGAAGGCTGGTTTTCATTTGGTGCAGATAGATATTTTTCCTTCTGGCTATGTGCTTATAAGGAAGATAATTATGGTAATTCCATTATTTCATGGGATCACGATATAGATGATGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //