Array 1 155247-155068 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV795256.1 Rothia sp. HMSC078H08 Scaffold172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 155246 36 100.0 35 .................................... ATCCAGATGTCGATTTGTGCGTGGGTGAGGGTGGG 155175 36 100.0 36 .................................... GCTACGCGGCGACTTCGAGACACAGGCCGCGATCAT 155103 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 97.2 36 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : NNNNNNNNNNNNNNNNCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCGAATACGCATCGGCTGCATTACGCCGCGCGTCTGGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCCACCGTTGAGACGACCTTTTGCCCGACATCACGACCATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGAAGTGCGATTGCCAGGTGGTGCCCGGGTTTGAGGGCAAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTCTAGGCAAGACCATTAGCGCCGTGGAAGATGACCATTTCCCTTCCTTTTCGGAGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCTTTTCGGAGGGACTTTCATTGAGGGGGGATCGGTGGTTGAGGAGGAGAGCTTAAGACAGTGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGGGTCATAGTCGTTTCTCCCCCCGGGCGCTCCCAGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGCATTGTGCACTTGCCGAAGTAGAAGCCCAAACCATCCTCATTTCCCTTCCTTTTTGGAAGGGCTTTCATTGAGGCCAGACGCAGCTGATCATGTCGGCTACCCCGGTCGATTTCCCTTCCTTTTTGGAAGAGCTTTCATTGAGGCACAAGCTTCGACCAGTCGCCCGCAAAAGCGCGGGTATTTCCCTTCCTTTTCGGAGGGGCTTTCATTGAGGCGGGTGGAGAGGCAACCCACCCGGTGCGGGGAGGACATTTCCCTTCCTTTTTGGAAGGGCTTTCATTGANNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 155663-155480 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV795256.1 Rothia sp. HMSC078H08 Scaffold172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 155662 36 100.0 37 .................................... CCACCGTTGAGACGACCTTTTGCCCGACATCACGACC 155589 36 100.0 38 .................................... AAGTGCGATTGCCAGGTGGTGCCCGGGTTTGAGGGCAA 155515 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 100.0 38 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCCGTGGATTTCCCGCACCCCCGGCCCGGGCGTTTAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGAACTTCACTTGGGGACACGGCGGCTGGTACAAGACATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTGGTTACCTGAATCCGTGCCGGGTGAGAGAAGACCCCATTTCCCTTCCTTTTCGGAGGGACTTTCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCGAATACGCATCGGCTGCATTACGCCGCGCGTCTGG # Right flank : TCTAGGCAAGACCATTAGCGCCGTGGAAGATGACCATTTCCCTTCCTTTTCGGAGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCTTTTCGGAGGGACTTTCATTGAGGGGGGATCGGTGGTTGAGGAGGAGAGCTTAAGACAGTGGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGATCCAGATGTCGATTTGTGCGTGGGTGAGGGTGGGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGGCTACGCGGCGACTTCGAGACACAGGCCGCGATCATATTTCCCTTCCTTTTCGGAGGGACTTTCATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 156078-155827 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV795256.1 Rothia sp. HMSC078H08 Scaffold172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 156077 36 88.9 35 NNNN................................ CCGTGGATTTCCCGCACCCCCGGCCCGGGCGTTTA 156006 36 100.0 35 .................................... AACTTCACTTGGGGACACGGCGGCTGGTACAAGAC 155935 36 100.0 37 .................................... TGGTTACCTGAATCCGTGCCGGGTGAGAGAAGACCCC 155862 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 94.4 36 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : CTGTTCGCCGGGGTCGAGCTTTGGCCGGCTCGGGTTTTGATGCGCTGTTCTTTCTAGTCCCGTGAGACTCGAAGCTCGCCCGGTTTGCATGGTTAGCTTGGTTAGTCTGGTTTACCTGAACCGCGCCAACCCCTCTCATACGTGAGGACCCTCGCCGGGTCGCTTAGGAAGCACCCGGCGGGGGTCTTTGTGTGAGCGAGAACCTGGTACGTGACGGGAACATGGCGTGTCGCTCGCATGGTTTCTTCCCTTGCCAGGGAGTTATGCGGGGGTAGATGTGGTTGGAGTGTATAATTTTGCGTGTAGCCTCCGCGAGGTTCTCGCGAAGCACCCGTTTCTGCCGCATGGTTGCGGGCTATTTTCGGGTAGCTATTTCCCTTCCTTTTCGGAGGGACTTTCATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCGAATACGCATCGGCTGCATTACGCCGCGCGTCTGGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCCACCGTTGAGACGACCTTTTGCCCGACATCACGACCATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGAAGTGCGATTGCCAGGTGGTGCCCGGGTTTGAGGGCAAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTCTAGGCAAGACCATTAGCGCCGTGGAAGATGACCATTTCCCTTCCTTTTCGGAGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //