Array 1 64233-68407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGK010000011.1 Roseospira visakhapatnamensis strain JA131 Ga0394287_11, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 64233 36 100.0 37 .................................... GGTGCCGATTGGCCTTGTCCAGGAGTTCCGTAGCCCG 64306 36 100.0 38 .................................... TTCAGATAGCGTCTGTGTTCATCGGCGTTCGGCTGGCC 64380 36 100.0 39 .................................... ATTGGCGTTGGTGTGGACGCGCCGACTTCCGATGGGCGT 64455 36 100.0 38 .................................... GGGGGCGGATGTTTTTCGGCGAGGACGACCCTGTCCCC 64529 36 100.0 37 .................................... GCGCCATAATCTGCCGCCAGTCCGACCCCAACCGGGC 64602 36 100.0 40 .................................... CGGGGCGGACGCCACAGCGGCCCCGACCGACGGGTTGGGC 64678 36 100.0 37 .................................... TTCGGACTACCACCAGGAGGCTAACGGCACCCGGGTG 64751 36 100.0 40 .................................... TCCATACCGTGCGTACTCCTACGCTCGACTCACATTCAAC 64827 36 100.0 37 .................................... GGTTCGGCTCCGGCGGCACCGGGCCGTTCGCCGGCCT 64900 36 100.0 39 .................................... CTGGATAGTCTCTTGACGGGGGCTATCAACTTCTCTGAC 64975 36 100.0 38 .................................... ACGGAATTTGCGCGCACGGCCGGTGAAACGGGAGACAT 65049 36 100.0 36 .................................... CACTGGGGGGAGCGTCGCCATGATCGGGCCTCACAA 65121 36 100.0 38 .................................... TCCTGATTGAACTCGCCCAGGGTGCAGGACATGGACAG 65195 36 100.0 41 .................................... TCCGGCCCACCTGCTGCCCTGGCTGGCCTGGGCCTGTTCGG 65272 36 100.0 39 .................................... GATCGTGGGTGCGCCCGCTTGCCTACGGTAAGCCGATCG 65347 36 100.0 36 .................................... ATGGGGGCTGGCGCTGTGAGCTTGGTGGGAACCAAG 65419 36 100.0 41 .................................... GTATACGGGCTGGCGAGATACACTCGGTAGCTTTGATTCGC 65496 36 100.0 39 .................................... GCCATCGTGCTCGATATGCGCGTCCGGATATTCAAACGG 65571 36 100.0 40 .................................... ATCACACGCCCTCCCGTCCGGTCACTACCCGGACGTGCAG 65647 36 100.0 37 .................................... CCCCGCGAACCAGTCGCGAAGGCTCATGCCGGCGTCG 65720 36 100.0 38 .................................... GCTCTCATTTTGACCGGAACCCTCGGCCTGTGTTTGTG 65794 36 100.0 38 .................................... TTGGCCGATCCGGCCATCCGGAGCATCCGCATCGCCAA 65868 36 100.0 38 .................................... TTGTGCATGCCTGGAGGTGCTGTGATGGCGACAAGGGG 65942 36 100.0 37 .................................... CAGGGATGCCAGCATCTTCTCCACGCTCGCGATACCG 66015 36 100.0 41 .................................... GCGCCTGGGATGTCCTCTTCATCCAACCCCCCGCCAATCAA 66092 36 100.0 37 .................................... TCGGCCGCCTCGCAAATCAGCCGGCCATCCAGGTCCC 66165 36 100.0 36 .................................... GGCACGATCCCCCTGATGCGCGGTCGCCTGGGCGAG 66237 36 100.0 36 .................................... GGGTCGAATCTGTCGAAGCCCTGCCTAGGCATGGGC 66309 36 100.0 39 .................................... CCTCTGACGAGAGCGGCGCGCCGCTCGGCGGGGCCAGCG 66384 36 100.0 39 .................................... TCCGCGTCGCTGAACCGGGTGACGTGCGCGATGAAACTG 66459 36 100.0 37 .................................... CTTTGCATCGAGACGGCCACAAGGCCGCCCACCGATG 66532 36 100.0 39 .................................... CGAATCGTCCGCTGTGCTGGGTGCAGCGCTTGCGGGCGC 66607 36 100.0 36 .................................... TGGTGCGCGGCCTTGACCTCGGCAGCCAGATCGGCC 66679 36 100.0 37 .................................... GTCCATGTGTGCAGGGGACGACCGCCCCCTAGTCACT 66752 36 100.0 39 .................................... TTGACTCATGAGGCTCGGATGGTAGGGAGGCGTATTCCG 66827 36 100.0 36 .................................... TCCGCGACCGCCTGGAATCGATTATGTTCCTCTAAT 66899 36 100.0 38 .................................... CGGCTGGCGGGCGTTTTGCTGGGACGCAGATGCAGGCG 66973 36 100.0 41 .................................... TCGCCCGAGCGGTGGCCGCTGAAGACGTCTCCAGGCTGCGG 67050 36 100.0 37 .................................... CGCTGTAGTCAAAGACGGCTTCGACCGTCAACTGATA 67123 36 100.0 38 .................................... GAGCACACGGACCGTGCCACGATGGACCTAGTCTACCC 67197 36 100.0 37 .................................... AGGATTTCTCGAACGATCCTGGGATATTCATGTCTGG 67270 36 100.0 38 .................................... AGGCGAAGCTGAACCAGACACGCCCGGACGATTCTGCG 67344 36 100.0 38 .................................... GAGGGCGCCGACTCGTTGGACGTTGTCCGGCAGACGCG 67418 36 100.0 36 .................................... CAAATCGTGTATTTATGGCCGCGCCACATCTGCTTC 67490 36 100.0 36 .................................... TCATCGCGGACTGAAACCCCACGAGTATCGGCCATT 67562 36 100.0 37 .................................... CCATCGAATAGGTCGGGGCGATATACCAGCATTTCGA 67635 36 100.0 38 .................................... AGCAGGATGACGTTGATCCCCTGATAGGGCACGCCGTT 67709 36 100.0 38 .................................... CTGGGCGGGACTCGTCTACGCCGTGGACCAGACGACGG 67783 36 100.0 41 .................................... GTCGTCGGGGTCAGGGTCGGGCGGGTGGGACAGCAGGTCGC 67860 36 100.0 39 .................................... GGACGTAACGCACGCCGGCGCAGCCCCGGCCGCGTTCCC 67935 36 100.0 39 .................................... ATTCATAATCCCACTGGCTCGTTGTTCTCATGGCTACTC 68010 36 100.0 35 .................................... ATCAGAGCGGAGTCTTGACCATGCGGTGGTATCTC 68081 36 100.0 37 .................................... GACTTGTTCGAGAGAGTGTTCCGGGGGCGGATGTTCT 68154 36 100.0 37 .................................... TGCGATAAAGGTCGGCGTCCATGTGAGGGTCTGCCAT 68227 36 100.0 38 .................................... GGCGACAGACCGGACCGGGATCAACTCACGCGCGGGAC 68301 36 100.0 35 .................................... CCCTTATGGTGAACAAGGAGGATGGCCGTTTGGTA 68372 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 57 36 100.0 38 CCTTCCGGGGCAGTCATGCCCCGGCCTCATTGAAGC # Left flank : CGCTGGCGCCGGGTGTGGACGGTGATGAACGGATATGGGGAATGGCTGCAACTCTCCCTCTTCCAGTGCCGGCTGTCGCGCAAACGCCTGGTGCACCTGCGCGGGGCGCTTTCGGAGGCCATCCAAGACGGCGCCGATCACGTGCTGATCCTCGACCTGGGCCCGGCGGACACGGTCAAGCCCCGCATCGAGAGTCTGGGCAAGTCTGTCGCCGTGGTGGAGCGCAAGCCCGTCATCGTGTAATCTTCCGATGCGTCATCGTCCCGAGCGCCCGGTTGGGCACCGGGGTGCCGCGCGCGGGCGAGCGCTGGTGCGGCGCCGCCGACTCCCGCAGCGCTCGAATCCGCTGTTTGCCATGGTGAATCAACACGATGCGCGACGATGCGCGGCACCCGCCGATGCGGACCGCTGGTCCGACTCGGTGTTCACCGCGTGTGTCTTGCCAGCGCTCGAAAACAGCGGCAGACTTACGGGCGATTCAGGGCCTTGCGAGGGGGGCT # Right flank : CCCGGCGGGACTGAACGGCTGGCAGGGGCAAGACCCCGTCCTTCCGCCTCTTCGACATTTGAAGTGGAATCAGGTGTGAGGACCGGAGCTGGCTGACGCCTACCAGAAACCGTATATCCCTTGGTTTGATCGGGACCACGATCATCCCTCCGTCCCGACCTGCCAGCCGCCGGGCCATCGGGGGAAGGGCCGGTCAAGACGGGCCGCGGGCCACCGCGCGCAGCGCGGCCTGGTCTTGACGGGGCCGGCACCGATGGCTGGCTGGCCAGGGTCGGACGGGCGTGGGGGACCGCATGCATTCCAACGAGATTCTCGCCCTTGGCCTCGGGATCGAACCGCCGTGGCGGTTGGTGGACCAGCGGCTTGATACGGAAGCCTCGCCCCATGTGCTGCATCTGACCGTGGCGGCGGACCGAGGCGCGGCGTTCGCCCGCCGCCACCCGCGCATCCGGCCAGCAGCAGCCCCGTGACCGCAAGCACACCCAGCCGTTTCATGGCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCGGGGCAGTCATGCCCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.80,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 6171-1995 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGK010000042.1 Roseospira visakhapatnamensis strain JA131 Ga0394287_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 6170 36 100.0 37 .................................... CCGGATGGCCCGGGCGACCTCGTACAGCGCGGGCCGA 6097 36 100.0 37 .................................... GGCCCGAGACCAGGCGCCCGGGGAGATCCTTCGGGAC 6024 36 100.0 40 .................................... GCCAAAGAATACTCGACCTCCCCTCCTCCGCCTTCGGCGG 5948 36 100.0 37 .................................... TCTTCCTCGGCTCCTGACCCGGTGACGGGCGCGGCCC 5875 36 100.0 38 .................................... ATACCGAGTGTGTTCCCCTACCGGAAGAACAGACGTGG 5801 36 100.0 38 .................................... CGGCCGCCGCCAGGGCGCCCCCAGCCAACGCCAGGGAG 5727 36 100.0 38 .................................... CCTGGTAAACCTGCATTTCAGACCGGCCGGCGTCGACC 5653 36 100.0 37 .................................... ATACGTTCTTCCGTACGTGACGGTTAGCCCCAACGGC 5580 36 100.0 39 .................................... GCCCAGCTTCGCGATCCGGTGGTCCAGGTCGGCCGCCAG 5505 36 100.0 38 .................................... GCCGCGCGCCAGGGGGTGCGCGACGGGCGCTACACGCG 5431 36 100.0 40 .................................... TACTGTTTGAGGCGCCGGGACCTCTCCGTCTTCTGGGAAG 5355 36 100.0 37 .................................... ACGATCGGAAACCCTCGTTCGCCTTAATGAGAGCGAC 5282 36 100.0 37 .................................... GCCCCAGGGCCTGGCCGATGGACTGGGATTCCCCGAT 5209 36 100.0 36 .................................... GACGCTCGTATTCGGGCCGCCGAGGTTCGCCTTTCC 5137 36 100.0 38 .................................... CCGGCTCGACGAGGCTCGGTATCACGGCGACCCGTGTG 5063 36 100.0 38 .................................... CCATCTACGCGAATTCGGAGCTCATCCGGGCGTGGCTG 4989 36 100.0 37 .................................... CCTCGGACATGCGCGCTGGGTTCCAGAAATGGACAGG 4916 36 100.0 38 .................................... TCCAGGCCGACCAGCCGACCCACCGCCGCGTGGCCACG 4842 36 100.0 39 .................................... CAGTCCTTTGGGATAGGCGAGCGCGCCAATCGCAGCCGG 4767 36 100.0 38 .................................... AATATAACTTGGTCAGATGATGTTAAATTAAAGAATCG 4693 36 100.0 37 .................................... CAGCCCGGGAACGCCTGTAGACGCTGACGCGGTGTTG 4620 36 100.0 37 .................................... CATGGCCAGCGCCGCGTCAACCGCCACCGACCGCCCT 4547 36 100.0 40 .................................... CGGGTCGGACAGATTGAGCCAATGCCGTTGTTCCAGCGCG 4471 36 100.0 39 .................................... GCCGATTATGGCGCCTATGACGCCTACAAGGCCGAGGAG 4396 36 100.0 39 .................................... GAGGGGTGGCGGGGCGACCGTGTGACGGCCGCATGCGGG 4321 36 100.0 38 .................................... CGCTTCGGGGGAGACTGTCGACGTCAAGTTGCTGACCG 4247 36 100.0 38 .................................... GCGACCGGGATTTCGATCGCCGAGGCCGAACAGTTCAT 4173 36 100.0 37 .................................... CAGAGACCTCGGACAGGGCGTACACTACCCAGACGCG 4100 36 100.0 36 .................................... CCCGAAGTAGCGGCTGTCGAAGGACCCCAGCGCCTC 4028 36 100.0 38 .................................... GATCAGGGGCACCGGGCCACGAAGCTCGGTCTGCTCGG 3954 36 100.0 38 .................................... CTGCCCGATGGCAGCAGCAGCGACTGGGCGAAATGGGG 3880 36 100.0 36 .................................... CACGAAAGCCTCGGACACCATCCCGGAAGCCCGGAG 3808 36 100.0 39 .................................... CCGATCCGGTGACGGGCGCGGCCCTGGTCGTCACCGTCG 3733 36 100.0 38 .................................... GCGGTCGACGTAATCGGCCGAACACAGTCTTTCTCGGG 3659 36 100.0 39 .................................... CCTCAGGTGGATGGTGCCCCCGAGGGGCTGACGGCTGAG 3584 36 100.0 37 .................................... GTCATTGTGCATCCTCCCGTCCGGTCACTATCCGAAG 3511 36 100.0 36 .................................... GTTAGCGCACCAGCATCGCGCGCCCGCAACCACACG 3439 36 100.0 39 .................................... GGCGGCCGATGCCTTGCCGGTCCACCAGGCCCGCGCATG 3364 36 100.0 40 .................................... CCATCCGGACCCACTGTTTCTGCGTGTTCAGCCCCTCGTG 3288 36 100.0 37 .................................... CACCATGTCCACGCGTGGCTCGGTCGAGGCCGGGGCG 3215 36 100.0 40 .................................... GACCTGGTGTACCGGTTCTATCCGGGGACGGAGACTCAAG 3139 36 100.0 37 .................................... CAACTCGGCCCGGTTGGCTTCGATGGTCTCGCGGATG 3066 36 100.0 38 .................................... TTTGTGTGGTGGGTACACGCGTCCGGTGAGGAGGCCGG 2992 36 100.0 38 .................................... GGCCTTGCGGTCGCCGGTCACCAACATCCAGTCGGGAG 2918 36 100.0 43 .................................... GCGCCATAGGCGAGGGTCCCGTTCACCTCGTAGCTGTCGCCAG 2839 36 100.0 38 .................................... GATCGTGAGCGCCGGCTGCGCCAACTGCTACGCCATGG 2765 36 100.0 38 .................................... GATGCGGTGCCCGACATTCATGAACCGGAGCCCAAGGA 2691 36 100.0 38 .................................... GCTCACTCCGAGCTACGAGGCCTGGCGGGAAAAGCCGG 2617 36 100.0 39 .................................... TGAGATTGTGAGGCAGACGGGGCTAAGCCCTTGATCCCG 2542 36 100.0 37 .................................... TCAGGGCCGAGTCTGGTACATCCACCGAGCGCTCTAG 2469 36 100.0 37 .................................... TGCCGCCAGGGCACGGATGTAGCCCTCCTGGCTCCGG 2396 36 100.0 37 .................................... GAACGGCTGGAGGCCGAGGTCGCCAGGGCGGACGAGG 2323 36 100.0 36 .................................... CCCGGGTCTGGGTGAGCCGATCACCGCCGATGCCTG 2251 36 100.0 37 .................................... TTTCCAGGTCACGATACCGGCCCCGGCTGTAGCGCGG 2178 36 100.0 38 .................................... GTGCAGGGCCTGGACGGGGCCTGGGCACCCCTCCCGCG 2104 36 100.0 38 .................................... GACACCACCTCGTCCTCGACCGACGTCGTGGCGTCGAG 2030 36 91.7 0 ..............................C..G.G | ========== ====== ====== ====== ==================================== =========================================== ================== 57 36 99.9 38 GTTCCCGGGGCGGAAACGCCCCGGCCTCATTGAAGC # Left flank : CGGTATGAGCCGGTGGCGAGAAATTGGACAATTTTGTTACAATAGCGATACTATGACTTGACTTGGACCCTTCCCGAGACTCCCTCTGGAACGCCCCGGGCGACCGCCATCACCGGCCCGGGTTACACCGACTCCACACGCGGACGCCGACCTACCCGCATTGGCCGAACCGGAGCCGAAACCGGGGCGCCGCGGGCCGGCATGGCCGCGTGTGCGAGACCGGGGCAAGACCGTCCCGGCGGTGGAACGCACACCGATTATCATGTAGTCTTCGCCAGGAAGACGCTCGGGGATCCGCCGCCGGGGGCCTGCGAGCGCTGCTGCGGCGACATCGACTCGCGGAGCGCTCGATTCCGATGTTTGCCATTGTGAATCAAGACGGTTATGCTGGCGCATCGGGTCGACGGAGGCTCGTACGGACGCCACGGACCCCCCCGACAGCGCCAGCGCTCGAAAAAACGGCCGGACTGTCTGGACTCACAAAGGGTTGTGGCCCGGCT # Right flank : TCTCTCCCCCCGTCATGGCGACGGTCGGGAGGACTCGACGGCGACGGGAGCGCCCCGTCGCCATGATCGCCGCGCATGACAGCGCCATGACATGGGCGTAGGCTGTCTCGTGGGAATCTGGAGGTGGTCCGGACCGGGCCGGGGTCCGGATCAGGGATGGCCTTGCACCGGCGGCGGATGCCTGTGACTCATCCGCCCTGGGCGCCTTGCCGGTGTCCCATCTCACGAAGACAGACACCGCGAAGCGGTGCTGGGCCGCACCGGTCATGGTCGATGATCGCTGGTACTGAGTCGGGAGGCCGCCCCGTGTTTCGCACCGCCGAACTGGGCCGCAAGGTCAGCAAGGAAGAGTTCGAACGCCAGAAGGAGCCGCTGCGCATCGAGTTGCTGGAGTTGCAGCAACGGCTGCGCGAGCTGGACATGCCGGTGATCCTGGTGTTCGCCGGTGTCGAGGGCGCCGGCAAGAGCGAGAGCATGAACCTGCTCAACGCCTGGCTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCGGGGCGGAAACGCCCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.20,-16.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //