Array 1 348121-350040 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZV01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C2703 NODE_1_length_474163_cov_124.137966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 348121 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 348182 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 348243 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 348304 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 348365 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 348426 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 348487 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 348548 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 348609 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 348670 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 348731 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 348792 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 348853 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 348914 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 348975 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 349036 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 349097 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 349158 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 349219 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 349280 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 349341 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 349402 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 349463 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 349524 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 349585 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 349647 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 349708 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 349769 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 349830 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 349891 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 349952 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 350013 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 366173-367771 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZV01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C2703 NODE_1_length_474163_cov_124.137966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 366173 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 366234 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 366295 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 366356 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 366417 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 366479 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 366540 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 366601 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 366662 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 366723 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 366784 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 366845 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 366906 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 366967 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 367028 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 367090 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 367193 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 367254 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 367315 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 367376 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 367437 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 367498 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 367559 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 367620 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 367681 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 367742 29 96.6 0 A............................ | A [367768] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //