Array 1 238304-239125 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFFS01000037.1 Escherichia coli strain BE1174 sequence037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 238304 29 100.0 32 ............................. TCCCGCGCCGAGGACTACGGCGATCGGGTTGT 238365 29 100.0 32 ............................. TCATCAGATGGTGATGAGGAAAAATTAATAGA 238426 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 238487 29 100.0 32 ............................. ATCCCCCGGTTATTGACCCCAAAACTGGTGAG 238548 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 238609 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 238670 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 238731 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 238792 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 238853 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 238914 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 238975 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 239036 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 239097 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 254627-256058 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFFS01000037.1 Escherichia coli strain BE1174 sequence037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 254627 29 100.0 32 ............................. CGATCCGGGCGTGCCGTTTGTTGCTCGCGGTA 254688 29 100.0 32 ............................. ATTATATATATCAAAATATTGGTCCTGTATTT 254749 29 100.0 32 ............................. CAGATCGTTAAGGCAAAAACGCCCCAACGAAT 254810 29 100.0 32 ............................. GCGCGCGACTACTGCCCGACCCGCCGACAACA 254871 29 96.6 32 ............................C GACTTTGCCCGGATAAGCAATGGCGATACGTC 254932 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 254993 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 255054 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 255115 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 255176 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 255237 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 255298 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 255359 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 255420 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 255481 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 255542 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 255603 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 255664 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 255725 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 255786 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 255847 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 255908 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 255969 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 256030 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //