Array 1 30740-30904 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWA01000038.1 Bacillus sp. JCM 19045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 30740 32 100.0 33 ................................ GAAACTCTCCAATAGCTGTCGCTGAACGCCGTG 30805 32 100.0 36 ................................ TTATTAGTCCTCGAAGCTGAAATCTTCCGGGTCGCC 30873 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 100.0 35 GTCGCACTCTGTATGGGTGCGTGGATTGAAAT # Left flank : CGATTCCAATTATGCGAGAATTACTCTCTAACTATAAAGACGGAACGATCGTCCTTGGAACACACGGAACAATTATGACTGTGATTCTCCATTATTTCGATTCAAACTATGCATTTGATTTCTGGAAAAGCACAACAAAGCCGGATATATACAAACTCACGTTTAAAGAAGAGCAGCTGGTCGATGTGAGCCGGGTGTGGGAAGCAAGTGAACAGACGAAATTTGTACGTTAAATTTTGTGAGGGAACCATTTTTTGACTAAAACACGTATTTAAGGTTGAATATTCTTAAAATAATTTGCTAGAATAATAGAAAGTAGTAAAATAAGATATTGGTGCGGACCCGAAGCGAACATAAAAAGCCTAGGAGACCCGCACCAAAAAATGCATTAATTATGTGTAAATGTGTAATAGGGAAGAGAGTTTAGCATTGATTAGTAGCTTGATCTAAATGGTTAAGAGGATAAATGCTAGAGTTTTGGCGTTTTGTAGTAAAAAGCT # Right flank : TGAATGTAGCTGCTGAAAGAATATTTGTGCGCCA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45-277 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWA01000052.1 Bacillus sp. JCM 19045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 45 32 100.0 34 ................................ ACCGAATAGATGAGTGTTGTCTTTAGATGCTTTA 111 32 100.0 35 ................................ CCAAATGGGAGCAAGATCATCTTTAAAGGGATGGA 178 32 96.9 36 ...............................C CCAATTGACGCCGCGCGCCTCCGTATGATAGAGCTC 246 32 75.0 0 .C........AC...A....A.TA...A.... | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.0 35 GTCGCACTCTGTATGGGTGCGTGGATTGAAAT # Left flank : GGATTGAAATATATGACAACCCGGTTCCTGCAAAGCATATTTGAG # Right flank : TCCATCGCTACACGAGCTAACATTTACCAATAATAGTTTGATTGGTTTCAGCCGTTTTTGTGGTTTGTTTTAAAAGGGGGAGAGATCGTCATGATCGAATTGCGAAAAGTAAATGAGGACAACATTGAAGAAGTTATTGCACTTGAGGTTGGCGAGGAACAAAAAGAGTTAATAGAAGTGACGAATCTTAGGTGTATTGCCGATGCATATGTGCTAAATGAAGAGGGGATACCGGCAATTCCATTTGCTATCTATGCAGATGGCGTTGTAGTGGGCTTTTATATGTATACATACGATACGACGGATCATGAGTCGTTTCAAGCGGAAGTGTTTTTTGGGAAGAAGGCTTATTTTATTTATCATTTGATGATTGGAAAGCGTTATCAAGGAAAAGGGTATGGCAAGCTTGCGTTTGAGAGAATCATGGCGGATATTGAAAAAATGCCAAGTGGTGAAGCTGATTATGTAGACCTGTTTTATCATGAAAACAATGCTGTAGC # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 11972-12400 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWA01000052.1 Bacillus sp. JCM 19045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 11972 32 100.0 35 ................................ CCGTAAAGTCCTTTTTAAGCCACTGAGCTGTGAAA 12039 32 100.0 35 ................................ GGCTATGACGTCGCCCTCTTGAAATTCGAGCAGCA 12106 32 100.0 33 ................................ TAAAAACAGATGAAATAATAGAGAAGTGGTATG 12171 32 100.0 33 ................................ AAGAAACTCTTGACGCGGGTCAAATCGGGTATG 12236 32 100.0 33 ................................ CGTGTGGTGAAGGGTGAGCGTAACGCCGAGGCG 12301 32 100.0 36 ................................ GGAATAGGCGTCATACGATGGTCTTACAAAGGTCAG 12369 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 100.0 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TCAACGATCGACGTCACTTGTCAAACAGGAGCAGACATCGAAATAGAAGAGCGCTCAGGAACAGAAATTACTGAAGCCTGGTATGAAAAACCAATGGCTCCAGCAGGCGTCAAAACCTATAATCCCGCATTCGATGTGACCGATCACACGCTTATTAGCGCCATTATCACCGAGCACGGCATCATTCGCCCAGCATATAAAGAAGCAATTGCCGCGCATGTGCATGTGGGGTAAATGGAAAGAAAATTGTTTATTCGATCTATCCCCTTTATCCAAATTCTGTTATCCTCTAGGTAGAGCAGAATTTGGATAAATGTCGTGATTACGCATGGTGCGGATACTAAGCGAACATAAAATCTCTAGGAGACCCGCACCAAAAAATGAGGTGATTGTGTAACAGTGTGTGAGGTTTTTCTGGATTAGCATTCGTTTTTCGGCTTAGTTGGTAGAATGTATTAGATAAGAGTTGTCGTTTTGAGCGGATTGCCGCTTAAATCGCT # Right flank : TCCTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38872-41103 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWA01000021.1 Bacillus sp. JCM 19045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 38872 32 100.0 37 ................................ TACAACGAATAACATCTTAAACAATATCAACAACAAA 38941 32 100.0 35 ................................ TTGTCTATTTAAAAGATGAAAAAACACCTCGAACA 39008 32 100.0 35 ................................ ATAGAACCTTATTTGAAGTCTACTAGTAGGTTGAC 39075 32 100.0 33 ................................ TTTGCCATGTAGTAGCGCCCCCTCTATTCGTAG 39140 32 100.0 34 ................................ CGTTATAGATTCGAATTCTTGCGTCGTCCCCGCC 39206 32 100.0 37 ................................ TAAAAGTGGAACAAGATAGTATAAGTAGAGCGCCACA 39275 32 100.0 36 ................................ TTCCCGAGGTTTATGTCGAAGTAGAAGAAGGAACGC 39343 32 100.0 33 ................................ CTCGATCGGCTTGTTGAATACTTCTGACGCGAT 39408 32 100.0 32 ................................ ACTGCTCCTCATGCTTTGGCCTCATAATCTTT 39472 32 100.0 35 ................................ AACCTACAAATAAGTCAAATCATGCAATACGCCTA 39539 32 100.0 36 ................................ CCAACCTCTTGTGCCATTCCAAAAGCGCCAGAAAGA 39607 32 100.0 34 ................................ CGTGTCCGAGCAGTCAACTATCACGGGCGCTATT 39673 32 100.0 36 ................................ AAGAACTTTGATGAAGAGATTGCAGCAACGCGAACC 39741 32 100.0 33 ................................ TGTTGTTACACCTACTACTCTTGATATTTTTTG 39806 32 100.0 34 ................................ ATCTACTTTATTAATGATGTCGTCAGGGTTAATG 39872 32 100.0 34 ................................ ATCTACTTTATTAATGATGTCGTCAGGGTTAATG 39938 32 100.0 33 ................................ TTTATAAAGACAGTCAAACAGATAATTACGCTG 40003 32 100.0 35 ................................ TTTGCCGTACCTGCTTTAATTCCTAATAAATTTGC 40070 32 100.0 35 ................................ CATTATCAAAGATTGAGCAACCCCAGAACGTCATG 40137 32 100.0 35 ................................ TTCGATTGGATACCACTGGACAGCATGAGCGTTTC 40204 32 100.0 34 ................................ TATTTGAAGAATGGTTCGATGCGTTTAAGACCAC 40270 32 100.0 37 ................................ TCTTCCTGCTCCTTGATCCAAGCTTTAGCACGCTCAA 40339 32 100.0 36 ................................ CTGTTTAAAAAAGGTGCGCATGTCGTGCAAATCCTT 40407 32 100.0 33 ................................ GTGCATTCTATCTATTGGTTATTATATTCTCTA 40472 32 96.9 34 .......................C........ AAGCATTGAAACAGGTCTAACAACAAAAATGGAA 40538 32 100.0 34 ................................ CGCAATAACTTCGGTAATGTCGCCGACTAAATGC 40604 32 100.0 34 ................................ AAAGAAACGTTCTCTTGGATGAACTTATCGCGGT 40670 32 100.0 36 ................................ TCCGTCCATAAACGTTGATACGCCAAACGAGCTTAA 40738 32 93.8 33 .................A.T............ AGTGAATTAGGGGAAAAGCTTGGTGTGTTTAAT 40803 31 90.6 35 ..........AA.-.................. ATTGCTTTTTGCCATAATAAGCACCAACGGCGAAC A [40812] 40870 32 96.9 36 ..........C..................... TTTTATTTTCTTTATTTATGGTTACTGTTCTACCTA 40938 32 93.8 36 ..............A....T............ AATTCTTGTTCTGTTAATCCGATGAGAGGTCGCCAT 41006 32 96.9 34 .........T...................... GTCCATCATTTCTAAATAATAGACTGGTTCAAAC 41072 32 90.6 0 G.........A...........T......... | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 98.8 35 ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : CGCGGTGATTTAGACGAATACCCTCCATTTCTATGGAAGTAGGTGAAGTATGCTCGTATTGATTACATACGATGTCAAAACATCAAGCCTAGGCGGTACAAAAAGACTACGTAAAGTATCAAAAGCGTGTCAAAACTATGGACAACGTGTGCAAAACTCTGTGTTTGAATGTGTACTAGATGCGACCCAACTTACGATTCTAAAACATGAGCTGTTCGAAATCATTGATCCCGAAAACGATAGCTTACGCTTTTATCGATTAGGAATAACTATAAGAATAAGGTTGAACATGTTGGCGCAAAACCTGCCTTGCAAATAGAAGACCCACTCATCTTCTAACAGGTGCGGACCCAAAGCGAACATAAAATCCCTAGGGACCCGCACCGGTTTTTGAGGTGAATGTGTGATAATGTGTAACAAAAATTGATTTTAAGTTCGTTTTTTGGTTCTGTTTTTGGTGATATTTAGTGTTATAAGGTTGTTTTTGGCCTTATTTCGCT # Right flank : TCCTTTTTAATGATATTGCAACCAGCTCCGTTTTATCGCACTCCTTGAAAACACAAATTGAATATCTTCATCATCGTATTTCGGCCTTGGGTAATTGTATTAACTTAAAAGAAGGTAGGTTCAAGTGAGGTAGCACTTCTCAATTCTAGCCTCTTATAAACTGTAAGTTTGTAAAGTGGTTAAAAAAAGGGGACGACTGCTTCTCCTAAATACAAAAAAAGACAGGGATTAGCCTGTCTTTTCTGATCTGATTATTGTGCAGGTATTCCGCCATCAAATTGGTATAGAGAGTCTGTTTTTCCGTTACGCCTGTACCTGTTGATTGGAAACAAAACGCCCCGCCTCATGTACATACTGTTCGAGACTAGCTGACCATTCCTCTTCACCAACAAGCTGAAGAAAGACGACGTTCTCTTCCCATGGTTCATAACGAACGATCCAAATCCCTTCAGCACTCGGTAAATGGAATTGAATTTCTTCAATGACGATGCCATCATCGG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29910-28686 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWA01000032.1 Bacillus sp. JCM 19045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 29909 32 100.0 36 ................................ TCCTTAATTTTGACATTAAGAAAGGATAGGGAATCA 29841 32 100.0 33 ................................ GATTCGCTGAGACAATGAGACAAGCGAGTCAAC 29776 32 100.0 35 ................................ TTGTTTCAACATCCACAACACAATAGCCAGTTGGC 29709 32 100.0 33 ................................ ATCCGACGCGCACCCCCTTGATAGGGCGAAGAT 29644 32 100.0 34 ................................ CCTTCAAACATTAGATAAGGATAACCGGACTCTG 29578 32 100.0 34 ................................ GATCCTCTCGCGCCAACTCTACGAATTTGTCCGG 29512 32 100.0 33 ................................ TCCACCTAACGGGACTCACACGCATCATCAAAT 29447 32 100.0 34 ................................ CAGTTCCTGCGAGTCTTTAAGGGAAAAGCTGACT 29381 32 100.0 34 ................................ CTCGGTTGACATGCATCAGATTTTTCAACATTTG 29315 32 100.0 35 ................................ CCGATAAAGCATTCTCGACCGATACGGAGAAAGAC 29248 32 100.0 35 ................................ TCACGCGAGGGCTTGATGTGTGGGTCATGGAGGAA 29181 32 100.0 33 ................................ CTTCAAGTTGCTTATCAACCACAGCATCAAAGT 29116 32 100.0 35 ................................ AAAAGCGACAATTCATGATTATTTAAAGGATATAA 29049 32 100.0 34 ................................ TTCATTCGATTAAATTCCTTGATGTACAGTTCCT 28983 32 100.0 35 ................................ GCTTCTGCACTATGTACGGTTGCTAAACTCGCTCC 28916 32 100.0 33 ................................ TCCAAAACCCTCTGAAGTGATTCACGCATCGAA 28851 32 100.0 35 ................................ CTTCAAGAAGTAATCCTAAAAAGAAGATGGTACAC 28784 32 100.0 35 ................................ TTGTTGTTCAATGGTGGCTTCCAGCGCTTCAATTT 28717 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 100.0 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : ACAGGCAGAGCTACACGTTGAAAAAGGAAGATTTATATTACAAAAATCAATTCTCACCCTATGTTGGCAGGAAGATCGGCTGCCGCGTTACGAAAACGATTGTGCGAGGACAAGTTGTTTATACGCTCGGTGAACCTTTTGCTAAAGAACGCAGCGGAAGATTGGTGCAGACAACTTAATGGTTTCTAAGGAACAAGTGCCAAGCAGGTACTTGTTTTTTCTTTGATCGTTAAAAATGGCTCAAAGTACAAATCGACCTAAGCTTGTCATTTCCTTGCTCATTCTGCTAGACTAAGTGTGTAATTAATGTAAAATAAAGAATACTTTGCAGGTGCGTACCCCGAGCAAACATAAAAACCCTAGTAGACCCGCACCAAGAATTTTGTCGAATATGAGTAACTGTGTAAAAGGTCGAGTGCTGAGGAAGGGAATTCGTGGTTAAAACGCTTCATTTTGCTCGATAAGGTGACTTTCAAGCGGTTTTTATCAAGAGATTGGCT # Right flank : ATTTGGGACTCGGTAGCGCTCACACAGGCAAAGTTTCGCACTCAAATGAATACACGAAATAAAACGAAGATGTTTTACTAATGAGCTGTAAACCATCTATATTTTTCAACAGGACATTATCAAACAAATAAAAACTTACCCAAAAAATAGATTCATAATTCCAATTTATAAACTACTAAAAAAAAGTACAAACTAGGAGTATTCACTATGCCCAAACAACCATTCTTCCCGCAATTGGAAACAGATCGACTGCGCTTAAGAGCGTTAACGGATGACGATGCGGTATTTATTTTCAAACTGTTTAGTAATGAAAAAGTGTGCGCGTTTTTGTATGATGAAGAGGTTTATACGTCGATGGATGATGCAAGGGAGTTTATTGAGTGGCATGCTGAGCCTGAGAAGAAAGGCGGAATCGTTGGGGAATTGAACGAAAGACGGATGGCGTGTTACTTGGGACCTGTGGGTTTGATTCGTGGGATCGCTACAATCACATTGCGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 46239-45350 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWA01000032.1 Bacillus sp. JCM 19045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 46238 32 100.0 33 ................................ CAACCCGAAGATGAATTGACTCCAGAGGATACC 46173 32 100.0 33 ................................ ATGATCCAAGCCAAGCCCCAATGAAAAAACTAT 46108 32 100.0 34 ................................ CGTTAATCTCGGGTAAATCCTCTGCCCCGTCCTC 46042 32 100.0 34 ................................ TTATCTCCCATTTCGGACACATCCTCAAATCCGT 45976 32 100.0 33 ................................ GATCAATGCGTGAATCACTTCGGAGGGTTTTGG 45911 32 100.0 36 ................................ CTGATCTACCTGAATTAGATTTAATTCAAGGTCAAG 45843 32 100.0 33 ................................ ATTGCCATTGAAGGATTTGGCTTTGCGTCACAG 45778 32 100.0 35 ................................ CGTCTTTAAATCCTTGTCCAACATCCACGCCAATC 45711 32 93.8 34 ........T....A.................. AGTTCCGCGAACATTAGAATCTGCATGCGCATTT 45645 32 96.9 33 ........T....................... TGTGCTGTGTTCAAGCCCTTCAAGCTTTGCCTT 45580 32 96.9 35 ........T....................... CTTTGTTAGTGCCGTTGATGTCCGCTTTAACTGCG 45513 32 96.9 35 ............A................... GATAAGACACAAGGAAATCATCGTTTGTTTCACAC 45446 31 93.8 34 ........T....-.................. ACTTCAACAAGAGGCATAGCACCGTTACAAATAA 45381 32 68.8 0 .........AC.A.A......ACTT..AT... | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 96.2 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTTATAGTTATTAGATGAAAT # Right flank : TAAACTTCGTATGTTTTTATCAACACATGGCTAGAGAAAACCTCGCCTCTTCGCAAAAACTTAATAAAGGTTCTTTATTAAGTTGTTTTTATAAGGTACACTACTTGTGAGGGTGTCGTCAGCTATGCCATTTGCTGAATTCATTTGCGGGGAGGGTTTACATGGCTACTGCTTTTCTAGTCATTATTTATCTAGCATTTATTAGTTTAGGGTTGCCTGATTCTCTTTTGGGGACAGCTTGGCCAATTATAAGCAAAGATCTGACGTTGCCACTTAGTGCGGCTGGGGCAATTTCAATGGTTATTGCAGGAGGGACAATTGTTTCTAGTTTGACCAGTCGTTTTCTGATTGAACGATTTGGAACGGGTTTTCTGGCTTTTATCAGCTGTGTTCTCACAGCTGGTGCTTTGCTTGGTTTTGCATTTGCGCCTTCTTTGGTGTGGTTTCTAATTTTGGCTGTTCCATTGGGGTTAGGAGGAGGGGCAGTAGATGTAGCTTTA # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //