Array 1 165088-163409 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNI01000003.1 Salmonella enterica strain BCW_4938 NODE_3_length_410920_cov_0.37046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165087 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 165026 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 164965 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 164904 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 164843 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 164782 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 164721 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 164660 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 164599 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 164538 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 164477 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 164416 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 164354 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 164292 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 164231 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 164170 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 164109 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 164048 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 163987 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 163926 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 163865 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 163804 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 163743 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 163682 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 163621 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 163560 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 163499 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 163438 29 93.1 0 A..............A............. | A [163411] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182384-181258 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNI01000003.1 Salmonella enterica strain BCW_4938 NODE_3_length_410920_cov_0.37046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182383 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 182322 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 182261 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 182200 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 182139 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 182078 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 182017 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 181956 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 181895 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 181834 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 181773 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 181712 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 181651 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 181590 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 181529 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 181468 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 181407 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 181346 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 181285 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //