Array 1 73399-70988 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQWA01000004.1 Citrobacter braakii strain HH1 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73398 29 100.0 32 ............................. TTTAATCGGTGCAGCCGTGCGACCGCGCTCGG 73337 29 100.0 32 ............................. AAATGAATATAATGGCGTCAAATAATAAAGAC 73276 29 100.0 32 ............................. TCTTACTCTCCCTGTGCGTGTACTTACCCCCA 73215 29 96.6 32 ............................C GGATCGCGCAGCCGGTTACGGCTCACGACTGC 73154 29 100.0 32 ............................. TCGGAGTTCGCTCGCAAGAACGAGCGGGCAAT 73093 29 100.0 32 ............................. GCACGATGGTCGCCGTGACCGTCGTCGTGCGG 73032 29 100.0 32 ............................. TGGTTGAATTCATTTGTACTAACGAGACTTCA 72971 29 100.0 32 ............................. AGTTGAAAACGGAGATTTACGCAGAGTTATTG 72910 29 100.0 32 ............................. AGCGCGCGTGGTACCAATGCCGCCGATTACCA 72849 29 100.0 32 ............................. CTCGGGCTTCCCATCGGGGCCATGTCCCGGAT 72788 29 100.0 32 ............................. CGTTGCCCTCCCGCTGGAGGGCGTAAGATCAG 72727 29 100.0 32 ............................. CATCGGCGATATTCCCGGGCCGCTGTCTCTCA 72666 29 100.0 32 ............................. ACATTCGAGCCGGTGACCGATTCGAAACAGTC 72605 29 100.0 32 ............................. GGCGAACACGTTTGCGGATCGCGTAAATAGTC 72544 29 100.0 32 ............................. ATGATCGGCGGCGGTAAATTTGCGGCCGTTGT 72483 29 100.0 33 ............................. TTTATTTAATAAAGAAATACAAAAGCGCCAGGC 72421 29 100.0 32 ............................. CTGGTAGGTGAAACAATTTCTTTATCTCTTAC 72360 29 100.0 32 ............................. CCCCATTGAAATATCATTCCTGTGCTGGAGTC 72299 29 100.0 32 ............................. GCTAAAATCATATACCCCGGGAGTGCGGGACA 72238 29 100.0 32 ............................. GCGATAGTCGATTCTGCAGGACCGGCTAACGT 72177 29 100.0 32 ............................. TTGTAACGGGGAAATTAGGCTCGGGTAAAACT 72116 29 100.0 32 ............................. CGATCGAGTCTGTTTTACTAATGGCCTCAACA 72055 29 100.0 32 ............................. ACTGGTGCGCACAATTTTCGCGCACGCCGGGT 71994 29 100.0 32 ............................. CACCTCATGCAACTCGGCCAGATCCGCCTCCA 71933 29 100.0 32 ............................. CGCAACCTGACAGGTGGCGATTATGACGACGA 71872 29 100.0 32 ............................. AATATCGAGCTAGTTTGCCTACACTGATTGAA 71811 29 100.0 32 ............................. CCATCTGGCGCTGGATTTTGAAGCGTCCGTCA 71750 29 100.0 32 ............................. GTCAACGGCGGAGAATCTGCCAGCACAGCCGG 71689 29 96.6 32 ............................T TTGCCTGAAATTATCGCAATCAGAATTTTTGA 71628 29 100.0 32 ............................. GAACACCGAAGTAGCGGAGCAGTTAACCGCTA 71567 29 100.0 32 ............................. CAACGTATGGACATTGCCAGCATCCTGCAATC 71506 29 100.0 33 ............................. GGTTTCTGGATTGGGTGCTGCTGGTGGAAGGTC 71444 29 100.0 32 ............................. ACTTGAGCTTGGGAATTATTGCTCCGGTTGTT 71383 29 100.0 32 ............................. GCAGTACCCGTTATGCGCTGGATTGGCAAACG 71322 29 96.6 33 ............................A TCAACAGCACATTGCAGCGCGAAGGCTTCCAGC 71260 29 100.0 32 ............................. CCAAGAAGCTAAAGCCGGCACCAGACGCAAAC 71199 29 100.0 32 ............................. GGGCTTGGGTCCCTGGCTTACGGGGAAAAAGC 71138 29 96.6 32 .......T..................... GCCACGCCGTTCGGGTCGATTTTGAGCGAAAT 71077 29 96.6 32 .......T..................... CCAGAGGTTCTGATGGTATCCGAAACCATGTC 71016 29 89.7 0 ............T............T..A | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGACGCTGGCGAAATAGACCCTCCGCAGCCTGCGCCAGATATGTTGCCGCCTGCAATACCGGAACCGGAATTGTTTGGAGATGGTGGTCATAGGGGGCGTGGTGGATGAGTATGGTTGTCGTTGTAACGGAAAACGTTCCGCCGCGTCTGCGAGGGCGTCTCGCCGTCTGGCTGCTGGAAATCCGTGCGGGTGTTTACGTTGGTGATACCTCTAAGCGAATTCGGGAAATGATTTGGCACCAAATCATACAGTTGGGCGGAGCGGGAAACGTTGTGATGGCCTGGGCGACAAACACGGAGTCAGGTTTTGAGTTTCAAACCTGGGGAGAAAATCGCCGTATTCCGGTAGATTTGGATGGACTTAGACTAGTGTCTTTTCTTCCTTTTGATAATCAATAGGTTGAGTGTTCTTTAATAAAACGGAATTGTTGTTCCCAAGTTGGTAGATTGTTACTTGATGAAAATTGCAATAGAAAACAGTTATATATATTTAGT # Right flank : CTTTGAAAGCAGAAATATTATGGGGCTGGATGGGTTACGAGGATTTTCCCGCCTTTGCCAGTTCTTTCACCAGCGGGAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCTGCCCGGTAAGGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGACTCCAGTTGGTTGCTTCAACGGAGAGCACGGCAATGCCCGCATCGTCGAAGACCTCTGCATCGTTACAACATCCAGTACCTTTTGGATAGTTTTTGTTCAGTCCCGGATTGGTGCTGGCTACGATACCGCGGCTGTGCGCGATGGCCAGCGCCCGGTCGCGCGTCAATTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGAGCTTATCGCCGACGATCAGGTTATCGAGGTTGATAACCAGCAGCGTATTTTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //