Array 1 431927-432112 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072377.1 Leptotrichia sp. oral taxon 218 strain F0707 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 431927 36 97.2 45 .................................C.. AATTTAGGAACTATAGACTATTCAACTGGAAATTATTATAATCAA 432008 36 94.4 33 ..C................G................ TCTGCTGGAACAGTAAATAGCTCATTTAATACT 432077 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 3 36 97.2 40 TTTAATATAAATGGAAATAATAATAATGGTATATAT # Left flank : TAACTACTTCAACTTCTGATCATTCTAATAACCAAAATAATAATACTTCTTCTGGAAGTGCAACATTGACAACTGCATCACCTGGAAATTTAAAAATTGGAGGGTCAACTAATAGAGTTGGATGGTATCATACAGGAACAAGTTGGACTGGTTCAAGTATAAATGCTCTTACTAGAGGGGTAATACATATGTCGGATGTTAATAATTTAACTTCCTCTAGTTATTATATTTCATATTCGAATTTAAATGGTGCTACAGGTGGAAATAATCAATTTTATAATGAACATACAGGTAATTACGGTGAAATTAGTGCAGGTAGTTCAACAGCAGATAAGATATTTTTAGATATTAGTAATAATTTTACTATTAATCCTTCAATTATAAATACTGGAAGTAGAACTTTTGATATTGAATTTAATATAGACAGAGGTAGTGGTTTTACAGCTGTAAAAAATAGTTCTGGAACTTTGAATTTTGTTAATGATGATGGATATACAATT # Right flank : TTCTACTGGAACAGCTAATATAACTAATTCTAATTTTAATGTAAATGATGGTGTAGTAAATGGTTACGACTATAACACAGGAGTATTAATCACAAGTGGTTCTAATAGTAGTAATAGTAGTAATTATATTGTGAATGGTAGTCGTTCAAGTGGAATCTTTTTAACAGGAGGTTCAATAACTTCTAGTAGAGATGAAATAAGTGTTGGAGGATCTGAAAGTAATGGAATTTATTTAAGTTCTGGAACAATTTCTTCAACTATCGATAACTATGGTAGAGGATTTATTAAAGTTAGTGGAGGAAGTTCCAATGGTGTATTTGTAAAAAGAGGAGCTACTGTAACTACTGTAGACGATGATTTTACAATTAGTGGAAATGGCTCTAACGGTATTAATATAGAAAGTGGAGCAACAGTAGGTACCGTACAAAGTTCTAGTTTTACTGTTGGTGGTAGCGGTAATGGTTCCAATGGTATTTATGCACAATCAGGTTCAACATTGA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAATATAAATGGAAATAATAATAATGGTATATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:88.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1066766-1065905 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072377.1 Leptotrichia sp. oral taxon 218 strain F0707 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1066765 37 100.0 40 ..................................... AATTTTTCGCTCAATCTATAAACATATTTCTTAATTTGCG 1066688 37 100.0 39 ..................................... CTAAAGATTTATAATATGCTACATCAAAATCTTCAAACC 1066612 37 100.0 36 ..................................... CTTCGATTTCCAGTCTTTTCATGTATTTTTTTAATC 1066539 37 100.0 38 ..................................... TCATCTTCTATTTTTATTATACGATTCATATACAAAGT 1066464 37 100.0 38 ..................................... ACAGTCGTTTTGTATACAAAGAAGAAATTTGTATAGGA 1066389 37 100.0 37 ..................................... CTTGAAAAGGTACTTCCTCTCCAAGAATTTTTTTAAT 1066315 37 100.0 36 ..................................... TTCTTATAAGATGGATGTATGTGAAGTTCCGTTAGA 1066242 37 100.0 39 ..................................... ATTGGAGAGCCTGATACAGATGCACCGCAAGAAGTTAAG 1066166 37 100.0 37 ..................................... TATCAGTCAATTTTTTTCGCCATTGGTAGATGTATCT 1066092 37 100.0 37 ..................................... TACTATTTAATTTAACGCAACCATTTAAAGTTACATT 1066018 37 100.0 40 ..................................... ACTTGCACTCTCACGCTCCCTAGATTCTTGTAATTGAATA 1065941 37 91.9 0 .............................T..A...T | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 99.3 38 GTTGAAGTAGTGTATCCATTAAAACAAGGATTGAAAC # Left flank : CTGAAATAATTGGATTATCTTCGTTGTAATAAAGATTATTATATTTTTCAATTTTGTTTTTCAAATTTGTATAATTTTTTAATATTTCATTATCAAGTGAGTTCATTTTTTCTTTTTCCTTTTCTTTTTTGATTTTTTTTATTTTTAAATTTAGTATATCATTTTTTGAGAAAATTATAAATAAAAATTTTTAAAGAGAGAAATAGAAAATAGAGAAATAGAAAATGAAGTTTTTTATTTATCATAAAAAAATTTAAAAAAAATTTTGAAAAAACAAAAAAATATGGTAAAATAAGTTCGTAGGAAAAGTTCCTACCACTCCAAGAATTAAAAAATAAGGAGAAAAATCAACTCAAAGTCAGTAAATATAAGGTTTAGGAGTTACGGAAAATGATAAAAAAACATCAAAAAATAACAAAATTTAAGCAAAAAAATGTGATTTTAATGTCTGAAAAAATCTCTGTAATACTGATAAATAAAGGATTTTATTGAAAATACGA # Right flank : TATTATTCGAATATTTTTATTAAATTAAAGAAAGTTTAAGAGCTTTCTTTTTTTAATTAATGATAAAATAAAAATATATTGATTTTTAAAATTATATTTTGTATAATAAAATATATGCTTATAAGCAAAGAAAGGAAATTGAAATGGGAACATTATTTAAATTATTTTTTTCATTTGCAAAAATGGGACTTTTCACATTTGGTGGCGGATATGCTATGCTTCCAATGATAAAGTCGGAGATTGTTGAAAAAAATAAATGGGCTACAGAAGACGAAATTATGGATTATTATGCGATAGGACAAGTGACTCCAGGAGTTATTGCGGTAAATACGGCAACATTTGTTGGACATAAAGTGAAAGGTCTTATCGGATCTATATTTGCAACGATGGGAATGATTGTCCCTCCTATTATAGTTATAACTTTGATTGCTTTATTTTTGAAAAACTTTTCTCACCTTATGGTCATAAAATACGCTTTTAATGGAATCCGTGCGTGTGTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGTAGTGTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [86.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 3 1430091-1429167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072377.1 Leptotrichia sp. oral taxon 218 strain F0707 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1430090 37 100.0 38 ..................................... ATTCCAAGTCTTTTACGGTTTTAATATATTCTGTTCCT 1430015 37 100.0 37 ..................................... TACTAATTCTTCTCCCATATAGAAAGGCTCAGTTAAT 1429941 37 100.0 36 ..................................... ATGATGTACTTTAATGCTAACCGTGAATTAGAATTA 1429868 37 100.0 39 ..................................... CCTCTAATTGCTTGTCGTAAGTGTTTTGTAGTTCATTTG 1429792 37 100.0 36 ..................................... TCTACGACATTACTATCAATTTCCCCTTTCGGGAAA 1429719 37 100.0 39 ..................................... TTATGAAAGTTTTAAAGAATCGTTCTATTAGAGTTTTGG 1429643 37 100.0 39 ..................................... ATTCAGGAAAGAGTAGTTCCTATTGAACATTCTAATGCT 1429567 37 100.0 39 ..................................... AACGAGAATACCCAATCGCTATCGAAACACAGATAGCAG 1429491 37 100.0 40 ..................................... AATTCCTTGAAAATTTCGTATCTGCTATTAGCATACACAT 1429414 37 97.3 37 ......G.............................. TTCAATGCTCTTCTGATAGCTGTGTAATGTGGTAATC 1429340 37 97.3 27 ......G.............................. GAAATAACATAGGTCGTTTGATAGTTG Deletion [1429277] 1429276 37 97.3 36 ......G.............................. CATAAATTTTGTATCAGGTGTCATTGTGGCACTCAA 1429203 37 67.6 0 ...G..A..A.AAT..T.......T..A...AA...A | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 96.9 37 GTTAAACTAGTTTATCCATTAAAACAAGGATTGAAAC # Left flank : ATAGTTGCTCAAACTGTAGCAGGATCAGCAAAAATGCTTCTTGAAACAGGAAAACATCCAGGACAGTTAAAAGACGAAGTTTGCTCTCCAGCTGGAACGACAATCGAAGCAGTCAGAGTTTTAGAAAATGGAAATTTTCGTGGAAATGTAATTGAAGCGGTTGTAGCTTGTACGGAAAAATCAAAAGAAATGGCAGGAGAAAAGTAAATTTTACAAAGAAAAACTGAATTTTTTGTTTAGTTTTTCTTTTTTTTATAAAAAAATTTTGAAAAAAGAGAAAAATATGGTAAAATAAGTTTGTAGAAAAAGTTCCTACCACTACAAGAAATAAAAAAGTGTTAAGAAAATCCATTCAAAGCCAGTAAAAATGGGGATTAGGAGTTACGGAAAATGCTAAAAAAACGACAAAAATTGAAAAAAATTAAGCAAAAAAAAGCAATTTTAATGTCTGAAAAAATCTCTGTAACATTGATGAATAAAGGGTTTTCTTGAAAGTACGG # Right flank : TAAAAAAATATTTAATCACAGTTAAGTTATAAAACTGTGATTTTTTTTTGGAAATAAGTTAATTAGTAAAAAAAATAAGTTATAAGGATTGGATATAATTATTGTGTAAAGAATGAGAGAGAAAAATTTTTAAAATTTAAAAATAAAAAGAGTTATTTTTAGGAAAAAATAGGTTAGAGAGAAAAGGTATAATGATTTTGTAAATGAGAAAGAGAATAAAAAATATGGAGTGTGATTGATTATGACGAGTTTTAAATATTATAGAAAAAATGATATAGAAAAGAAATTGGAAAAAGCTAGATTTAGACCTTTGGATGTGATGGTAACAGGAGTAACAGGAGCAGGTAAATCGACAACATTAAATACAATTTTTAAAAAAAATGTGGCAACGGTTGGTAACGGTGTGGATCCTGAAACAATGGATTTAGATTCTTATTCGTTAAATGATGTATTTAGATTGTGGGATACTCCTGGATTAGGAGATGGTGTTGCGAATGATG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACTAGTTTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : GTTAAAGTAGTTTATCCATTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 4 1584291-1582866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072377.1 Leptotrichia sp. oral taxon 218 strain F0707 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1584290 32 100.0 35 ................................ TGTTATTATTATCATAGCAACATTTTTTTTAAAGT 1584223 32 100.0 34 ................................ ACTCACATATCTCATTTTTTTTTACCTCCACATA 1584157 32 100.0 35 ................................ TAAGTCAAACATACCATTTTCGTCTAATTCACAAC 1584090 32 100.0 34 ................................ TGTTTAAGATAATCGCCTTTTATGATATTTTCGG 1584024 32 100.0 34 ................................ AATGCTTGGAAGTCCATCGGAATCCATTGTTGTG 1583958 32 100.0 34 ................................ TATCGACATTTGTAAAGAGACAATAACAATTACT 1583892 32 100.0 34 ................................ TGTTTGAACTCCTAATATCTGTTATAATCGTATT 1583826 32 100.0 35 ................................ AATAATTTTCAAGCATACACTCCATTGGTATGGAA 1583759 32 100.0 34 ................................ TATGATTGGAAAATGTGTTATTCTTTAGCCAAGA 1583693 32 100.0 34 ................................ TTTTTGTTGCTGCTTTCGATAAATTCAAAACGGT 1583627 32 100.0 35 ................................ TTGAGTGATCCGAATGACGAAAATGCGAGGGGGGA 1583560 32 100.0 35 ................................ GGTCATTGTCAACGCAGCCAATTTTATAATAAATG 1583493 32 100.0 34 ................................ CTCGTTATATGTTATTGTACCAACAGACACATAA 1583427 32 100.0 34 ................................ AAATAGTAACTGAAAATGTGTAATAACATAAAAT 1583361 32 100.0 34 ................................ AAAAAATTTATGCATAAAAAAGCAAAAAATGATT 1583295 32 100.0 34 ................................ TATAAAGTCTTTTTGATAATCTAAAAATAAGTTC 1583229 32 100.0 35 ................................ CATTAGTCGCTTGTGTATTATGTGTATATTACGCA 1583162 32 100.0 34 ................................ ACTGTAGACAAATTCTTCGTAATACTCCCAGTCT 1583096 32 100.0 34 ................................ CATCAATCCTTTTTTATAAATTAACATTTATCTT 1583030 32 100.0 34 ................................ ATAAGGGAAAGCTACAATGTGATGAAGGGCAAGA 1582964 32 100.0 35 ................................ AATAATGGAAAAGTAATCAAAAGAAAAAAAACAAA 1582897 32 96.9 0 ...............................C | ========== ====== ====== ====== ================================ =================================== ================== 22 32 99.9 34 GTCACTCTCTTTACGAGAGTGTGAATTGAAAT # Left flank : AGATATTAATGAATATCCTCCATTTCTGTTATAATACAAGGAGAAAAAAATGATGATATTAGTTACTTATGATGTAAATACTACAGAGTTAGATGGAGTAAGAAGATTAAGACAGGTTACAAAAGTTTGTGTTGATTATGGTCAAAGAGTTCAAAATTCAGTTTTTGAGTGTAGTGTTGATCCAGCTAAGTTCGTAGAAATAAAACATAAGCTTTCAAAAATTATAAATCATGAAAAAGATAGTTTAAGATTTTATAAATTAGGTAAAAATTGGGAAATTAGAGTAGAAACAATAGGTAAAAATAATTCATACAATCCAGACAAAGAAGTATTAATATTTTGATTGCGAATCATTATTACACAAAAAAAGGTCAAATGTTCGCACTTAAAATTACTATAAAAAAGAAAAAAATATATTTTTTATATTTTTAAAATAATTATTTTATAATTCAATTATATATTTGTTGTAGTAAAATATCTAAAAATCGCACTATAGTGCA # Right flank : TTGAATAAAAATTTAATTATTAATTTATAAATTGTATTAAATTGTGTCTTAAATTTTTGTATTTTAAAAGTTTTGGGCACAATTTAATTATACTGATAAAAAAGGAGTGAAGTAATGAAAAGTAAAATAGTATTAATTTTTTCAATCTTTATGCTCTCTTTTAATGTTTTTTCAACTCCAAATTCTAATGAGAAATTTAAATTGGCAAAATCATATTTGGAACAGAAAGAATATGTCAAAGCTGAAAAGATATATTTGGAATTGGCTAAAAAGAAAGATGTTCATGCGATATATAATTTAGGTTATCTTTATATGGAGCAAGGAAAAATAATAGAAGGCGAAAAGTATTATAAAATGGCTGCTGATATGGGATACGATGATGCGATGTTTAATTTGGCAATGTTTTATGATAGACAAAAGAATTATGATAAAGAAAAATTTTATTTAGAAAAATTGGCTGCAAAAAATCAAAATGATGCAATATTTCAGTTGGCAATTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTTTACGAGAGTGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [90.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //