Array 1 933789-934852 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039436.1 Salmonella enterica subsp. enterica serovar Newport strain VNSEC031 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 933789 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 933850 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 933911 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 933972 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 934033 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 934094 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 934155 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 934216 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 934277 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 934338 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 934399 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 934460 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 934521 29 100.0 32 ............................. CTCCCCCGCCTGATAATTACGCCATCTGCAAT 934582 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 934643 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 934704 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 934765 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 934825 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 951509-953227 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039436.1 Salmonella enterica subsp. enterica serovar Newport strain VNSEC031 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 951509 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 951570 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 951631 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 951692 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 951753 29 100.0 32 ............................. GCTGAAGCGCCAGGATACCCTGAAACGCTACC 951814 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 951875 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 951936 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 951997 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 952058 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 952119 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 952180 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 952241 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 952302 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 952363 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 952424 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 952485 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 952546 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 952607 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 952668 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 952729 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 952790 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 952851 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 952912 29 100.0 32 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCAT 952973 27 69.0 15 ................TTCT--.C.G.T. GCAACGACAGAATGC Deletion [953015] 953015 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 953076 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 953137 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 953198 29 96.6 0 ......G...................... | A [953225] ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.6 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //