Array 1 47808-47238 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOIA010000009.1 Providencia rettgeri strain N18-03642 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47807 28 100.0 32 ............................ ATTGCGCGGATAGGTTCCACACCTGCCCAATA 47747 28 100.0 32 ............................ TCGTTTGAAATCAGTCATACTCAACACATCAA 47687 28 100.0 32 ............................ ACCAAGCTCTATCGCTCATGGGTTCTTGATTT 47627 28 100.0 32 ............................ ATACAATGAGTTTAAAAATAGTTTACCTATTG 47567 28 100.0 32 ............................ CGCACAACAAACGATAAAAAGTTGCCACGGCT 47507 28 100.0 32 ............................ TAAATCTTTTTGCCGAGAGAGTTCTGACTGAT 47447 28 100.0 32 ............................ TTTAACACCGAGAATAACAATTCTTATATCTT 47387 28 100.0 32 ............................ GTCAGAATCAAGCAAAAATAATCGTTTTGACC 47327 28 96.4 32 .............T.............. TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 47267 28 78.6 0 ......T...GT......A..AG..... | AT [47246] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : TATTAAATCGATTCAGGCAGTACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTAAAAGGGCTGAGCCGAATTGAAGCCGATATGCAGCAAAAAGCACGGTTATGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGAGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAGATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATAGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGTTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCTATTTTTGACCTTTGTTTTTTGCTCTTTTAAAATTAGTCAGTAAATCAGTAGGTTATAACTATCAGTAAATAAAAGGGTATTTTCCAACAAATACCCTTAACTGATTGTTATCACTTATTTTTTATTTTAAAGTGCATC # Right flank : CTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAAGCAATTTGCATTACAGTGCAAATTATGATGAGGGTATATGTATACTGTAAAATATCATTCTGAGGCTGAAAAAGAAGCAAATGCACTGCCTTTAAAAATCAAGGTGAAATATGACCGCCTCATTAAAAAATTAGAGTTATCAGCTAATTATTTAAGAGAACCAGATACTAAATCATTGGGCGATGGATTGTTTGAGATAAGAACTATGGGAAGTGAAATAGCTAGGGGGTTATGGGTTTACCACAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCTGAGTTTTATTTAGCGAGAAAACGTTTATTGGAGCTATTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATAAGAACTGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 57722-56492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOIA010000009.1 Providencia rettgeri strain N18-03642 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 57721 28 100.0 32 ............................ GATGTGAGAATTAGTAATAATCAGTCTATGGA 57661 28 100.0 32 ............................ GTCAACGGTGATTGATTCATCTTTAGATTTAG 57601 28 100.0 32 ............................ AATACGGTGACGATGCTAGCCACTTACCAAAA 57541 28 100.0 32 ............................ AAGTTAGCCACATGATTGGTGGAAACTTTTTG 57481 28 100.0 32 ............................ TGAACTGGCGGTGCGTTTGGGCTTGAATGAGG 57421 28 100.0 32 ............................ GATGTATTAGCGACTCGTGGGTTGCGTTCTCT 57361 28 100.0 32 ............................ GCTTTCATTATCGGATTCCCCATCTACTTGGC 57301 28 100.0 33 ............................ ACCATCTGGAGATAGACCGTCACTTCTTTTCAC 57240 28 100.0 32 ............................ TTTATTGGCATGACCGCGCACCTTTCGGGCTA 57180 28 100.0 32 ............................ CACCCAAGAAGCTGCTGAAAATGCGGCGGCTC 57120 28 100.0 32 ............................ ATTCCTGCGAATATCGCATATTTGATTTGTTT 57060 28 100.0 33 ............................ AATGTCGGTCTTTCATTGTCAGTGCCGTTCATC 56999 28 100.0 32 ............................ ATTTAATTTAAAAGTGGCTATAGAATGTGTAT 56939 28 100.0 32 ............................ TGACTACTCGCCGTAGCTCTAATCCTAACCTG 56879 28 100.0 32 ............................ TGACTACTCGCCGTAGCTCTAATCCTAACCTG 56819 28 100.0 32 ............................ TATAATGATTGTGAAGTCCAGTAACGAAGCTG 56759 28 100.0 32 ............................ ACACACTCTGTGCGGTTGGTTCGCAAACCTTT 56699 28 100.0 32 ............................ AACAGAACGCAGATATGCCAGAACGTTTCCAG 56639 28 100.0 32 ............................ TATAATCTGAAACACTCTTCACCCCACCCACT 56579 28 100.0 32 ............................ ATTATAGATCCTCTATCAAAGCATTTACATGA 56519 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTAGATTTTTTAGCTGATACGCGCTCGATTCAAAATGCGGCCCGCAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCCTCACAAAGTATTTTTAAAGACTTAAACAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATACTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGGTTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTTATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAGGATTCGCTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTATTTGTTTTATTCTGTTTTTGTTATA # Right flank : GCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGGTCACAAGGATGGTATAAAAAGAGCATCAGTGAGTATTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGAGAATTAAAAACTATTTTACATTCGAAACGCGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATCGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCTCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //