Array 1 3068964-3063783 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOK01000001.1 Barrientosiimonas humi strain DSM 24617 Ga0264280_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================== ================== 3068963 28 67.9 94 .C..C.G.A......TAC..C...C... AGGGCTGGAGCTCGGCGAGCAAGTACCGCCGCGCGGCGCGACGAAAGTGAAGTAGTTTCGCCCTGGAGGAGTGGAACACTGCAGGTCAGCGACT 3068841 28 100.0 33 ............................ CGGCATGACCCTCCTCGTCGCCCTGCTCATGGT 3068780 28 100.0 33 ............................ CCACAGCCGCCCACGACTGCGCCCCGTCTCGCT 3068719 28 100.0 33 ............................ CACCAAGTCGTGGGCGGTGCGCAACCCGGTCAT 3068658 28 100.0 33 ............................ CCAGCCGAACAGGGTGGTCGCGTTCCCGGCGTC 3068597 28 100.0 33 ............................ CTCCTGCCATGCGAGGTCACGGTCCACGCCGCG 3068536 28 100.0 33 ............................ CTCGATCAGGTAGGCGATCATGTTGTCCTGGAA 3068475 28 100.0 33 ............................ GCTCCGCGCCGAGGTCGCCCGACTCAAGGGCGG 3068414 28 100.0 33 ............................ CCCCTGAGCACCCGGACACCTTGGAGGAGGGCG 3068353 28 100.0 33 ............................ CCGCCTGCTGAACTTCCGTCCATGCCGGCTTCA 3068292 28 100.0 33 ............................ GTTCTGCCTCGCGGTCGCCGCCGCCGAGCACGA 3068231 28 100.0 33 ............................ CGACTACCCCGAGGACCATCGAGACGACTGCCA 3068170 28 100.0 33 ............................ CGCCGTGTCCACCGCCGCCCGCGGCATCCAGGC 3068109 28 100.0 33 ............................ GGGCGGAGCAGGACGGCCTGCACGCCGAGACGT 3068048 28 100.0 33 ............................ GCGGTCGGTCATCCTGGCGGACCCGGTGTTTGA 3067987 28 100.0 33 ............................ GACCTCGTGGCGCGACGACCTGCGAGCCGGGTT 3067926 28 100.0 33 ............................ CAGGATGTTCGCGGCGCGCACGGCGTCGGAGCC 3067865 28 100.0 33 ............................ CTCGTCCAGCCCGGACAGTGAGCCGATGCGGTC 3067804 28 100.0 33 ............................ CGCCCAGCAGTGGGCCGAGACCAACCGGGGCGC 3067743 28 100.0 33 ............................ CCGCTGGACGTGGCGGTGAGCGCAAGGGTGCCG 3067682 28 100.0 33 ............................ CGAGCCGCCGGGTTCGCCACGAAGTGGTACGAG 3067621 28 100.0 33 ............................ CGTGGTCTCGAGGTCGCCGGGCGGTGAGCAGAC 3067560 28 100.0 33 ............................ CTTCTTCCCCGCGTCGCCGCCGGCGTCGCCGAG 3067499 28 100.0 33 ............................ GGAGTTCCAGCGCCGGTCCAGCCTCACCAGTGA 3067438 28 100.0 33 ............................ CTGGGGTCGAGGCGCTATGCAGGTGTGGGGCGA 3067377 28 100.0 33 ............................ TGTATATGCCGCGCTATGGTCGCCTAGACCACA 3067316 28 100.0 33 ............................ ATGACGGGCACCGACATTAGCGCCGGTCCGCGC 3067255 28 100.0 33 ............................ GCCGACCTGCCCGATCTGTGACGGTGACGGAAT 3067194 28 100.0 33 ............................ CGACTGACTAGGTCGCCTTAGTGCGGCATATAC 3067133 28 100.0 33 ............................ CTCTACGCCTACGCTCCTGCCGACGCCTACCGG 3067072 28 100.0 33 ............................ GGAGTTCCAGCGGCGGTCTGGCCTCACCAGTGA 3067011 28 100.0 33 ............................ CAGGACGGCCTCGCCGCGCAGACGTGGACCGCC 3066950 28 100.0 33 ............................ GCGTGCTCGGTCGCGGGGAGAGAGACCGCCGAC 3066889 28 100.0 33 ............................ GCCGCGGGTGATGATGTCGAACGCGGTCTTCGC 3066828 28 100.0 33 ............................ GCTCGCCGAGACCGGCGAGGAGACCTGGAACGC 3066767 28 100.0 33 ............................ GCCACGACGCGGGCGGCGATGGTGTCGGTAGTG 3066706 28 100.0 33 ............................ CCTGCTGCGACCCGTCTCCGGCGTCGGCGTCCT 3066645 28 100.0 33 ............................ CGATGCAAAGTGACCGCGGGCGTTGACCGAGAA 3066584 28 100.0 33 ............................ TCCCCTTTCAGGGCAGTGGTGTTCAACCCCAGG 3066523 28 100.0 33 ............................ CCTACGTGCGGCACGGGCAGTAATGCCCGTGCC 3066462 28 100.0 33 ............................ GGCCGCGATCCCGCGTGGGCAATCGAGCGTGTG 3066401 28 100.0 33 ............................ GTGGCCGCCGAAATGACCGGCACGGACATTAGC 3066340 28 100.0 33 ............................ CTTGAAACCTCCACAGTGACCGCGCACGACAGG 3066279 28 100.0 33 ............................ AGCGCGGCGGCAGATGGGGCAGGGAATGTTGCG 3066218 28 100.0 33 ............................ AGCGCGGCGGCAGATGGGGCAGGGAATGTTGCG 3066157 28 100.0 33 ............................ GGTCACGGTCGATGCCGCGCTTGCGGGTGGCGA 3066096 28 100.0 33 ............................ TCGTCAATATCGGTGCTTTGTCTGCGACGAGAC 3066035 28 100.0 33 ............................ CCTCCCCGGCCGATCCATTTCACATTCTGAGAC 3065974 28 100.0 33 ............................ GCGGACGAAGCAGGCGGAATGCACCGATATGCA 3065913 28 100.0 33 ............................ GGAATCGGCGGGATTGTGGTCTAGGTGACCATA 3065852 28 100.0 33 ............................ CTTCGACGCCCAGCCCTTGCCGGCGTCGCTGCC 3065791 28 100.0 33 ............................ CAACCCCGCGTTCCACATGAAGGGCTCGGACCA 3065730 28 100.0 33 ............................ GGCGGTCGACACCGCACGGAGCCGATCCCTCAC 3065669 28 100.0 33 ............................ CTGGGGCAGGGGCGCAATGCAAGTTTGGGGGGA 3065608 28 100.0 33 ............................ CGGACACGAACTCTACGCGTACACGCCAGGCGA 3065547 28 100.0 33 ............................ CACGTCCTTCGCCGTCTCGAAGACCGTGGTCGT 3065486 28 100.0 33 ............................ CGCCGAGCAGGTCGCCGCGGTCCTGACCTCGGT 3065425 28 100.0 33 ............................ CGCTTGCAGACGAGACGTCTGGCCGGTGCCTCC 3065364 28 100.0 33 ............................ CGTCGCGACCGACGACCACGGCCCGTACGGCTG 3065303 28 100.0 33 ............................ CAGCTTGTACTCCTCGCCCTGACCCCAGTCTTC 3065242 28 100.0 33 ............................ CTCAGTCATCGGTCTCTCCTGTGTCGGTGTCGG 3065181 28 100.0 33 ............................ CAGCCCCGCGCCGGGGCCGGCCTGCTGTAGGTG 3065120 28 100.0 33 ............................ CCACACCAGCGGACTGACGCCGAGCGCGTCGGC 3065059 28 100.0 33 ............................ CTCCTGCCCGCTATAGGGATTGAGCGCGTTGGA 3064998 28 100.0 33 ............................ GATCCAGCGCATCGTCAACAACGCCACGAGCCC 3064937 28 100.0 33 ............................ CGAAGACGAGTGGCCGTGGCGGGTGGCAGTCCC 3064876 28 100.0 33 ............................ GACGAAGCCGCCGGTGCCGACGATCCCGACGGG 3064815 28 100.0 33 ............................ GGCCTACCTCGACCTCAACGGCGGCCGGCCGCG 3064754 28 71.4 14 .............TCA.T.T.G.CG... GAGCTCGAGGTGGC Deletion [3064713] 3064712 28 100.0 33 ............................ CAGCCTCCTCGACCGCGCCGGGGTGTCCCGGAA 3064651 28 100.0 33 ............................ GACGAAGCCGCCGGTGCCGACGATCCCGACGGG 3064590 28 100.0 33 ............................ GGCCTACCTCGACCTCAACGGCGGCCGGCCGCG 3064529 28 71.4 14 .............TCA.T.T.G.CG... GAGCTCGAGGTGGC Deletion [3064488] 3064487 28 100.0 33 ............................ CAGCCTCCTCGACCGCGCCGGGGTGTCCCGGAA 3064426 28 100.0 33 ............................ GTGCCTGCCGCCGACGTGGCGCGCGTGGCACTC 3064365 28 100.0 33 ............................ GGCCGCGCGCGGAATGGGTTGGCGCGTCTCGGA 3064304 28 100.0 33 ............................ GGCCGCGCGCGGAATGGGTTGGCGCGTCTCGGA 3064243 28 100.0 33 ............................ CACCGGCCTGTCGTCGTCGTCGGTGAGCGAGTC 3064182 28 96.4 33 ...................A........ CTCCCACCACATGAGCCGCGGCGCTCCTGGGGT 3064121 28 100.0 33 ............................ GCTCAGCGACCCGCCGGCGGCCGACTCGATCGA 3064060 28 100.0 33 ............................ GGACGGCTCGTCGACCGCGGCCGGGACCGGGCT 3063999 28 100.0 34 ............................ GACTACGTCCTCTCAGAGTTTGTCAGGAAATTCA 3063937 28 100.0 33 ............................ CAGTTAGGACCATAGGCGAGTAGGTGCGGCGTG 3063876 28 96.4 37 ........T................... GAACGACGTACGACGGGCCCAGATGCGGGAGGTGGCC 3063811 28 71.4 0 .A.....A.........T.A.GC.G..G | A [3063797] ========== ====== ====== ====== ============================ ============================================================================================== ================== 85 28 98.5 33 GTCCGCCCCGCGCGAGCGGGGATGAGCC # Left flank : GCTCGCGCCGAGGAGCTGGACGATCTGCCCGCCGAGACACGTCGCGAGATGCGCGACCGACTGCACGACGGGAAGCTGCTCACTCGGTGCGTGCGAGACATCCACCGTTTGCTGCTGGACACCGACGACAGCCCCGACGAGGTCGATGACGGCGAGTGGGATGTCGTGCATCTCTGGGACGGCCAGGGGCGGCGCGTGGCGGGTGGACGCGACTACGCGGAGGACGTGCCGTGGTAGTTCTCGTGCTCACCGCCTGCCCCGCTGGACTCCGCGGTCATCTGACCCGGTGGCTGATGGAGATCTCCCCAGGCGTCTTCGTCGGTGCCGTGCCGGCTCGGGTGCGGGAACAGCTGTGGGAGCGGGTCCTTGATCTGTCGAAGGATGGCCGCGCGGTGATGGTGCACTCCGTGCGCGGCGAACAGCGGCTCGCGTTCCGGATCCACCGGCACGAATGGGAGCCGGTGGACTTCGACGGGATCGAGCTGATTCGCCGCCCGACC # Right flank : CCCGTCACGCCACCAAACCGTCGCGCTGACAAGGCAGTTCGCGCCACCTGTGCCCGGCACTCCGCCTCACCAGCCGGACCGATCGACGAACTGCCTTCCCGCAGCGACGGTGTCCGGGGCAGTGGGACAGCCCAGAAGCTGCCGCGCCGGACCTGGCGCGGAAAGGTCTGCTGGGAGCTGCTCAGCCACGCCCATCGCCGCCAGGCTCCCGGCGTACTTCGCACGGGCGAGCAGATCCTGCGGCAGCGGCGCTCCTCGTGAGGGGAGTCTGGGAACGCGTGACCCCGACCGTGTCCGAACAGATCGGACAGCGCGTCGAGTGGTCACTCGTTGCTGGTGTGAACTGCGGCGCACCCGCCACAAGTGACCACTCGGCGACGCGCTCGTTCCTCGCGGCGCTCCTTCCCCGAACTACTCGCCCCGGCGGCTCGGCTGCCCCCTCGTCAGCCGAGCCGCGGGGTCAGCGCACCCGTCTGCGCTCGCGACCCTCCCCGGGGTCC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCGAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3134596-3132559 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOK01000001.1 Barrientosiimonas humi strain DSM 24617 Ga0264280_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3134595 28 100.0 33 ............................ GGACGCCGCCGGGCGCCCGCTGTACGCCGTGCG 3134534 28 100.0 33 ............................ CTTTTCACAATCTGAGACGATTTGAAAAAACCC 3134473 28 100.0 33 ............................ GTCGGCGTACGCCGACCCGTCGCGGTAGATCGT 3134412 28 100.0 33 ............................ CCATGACGAATCGCCGTTGGCCGCCGTCCTTGG 3134351 28 100.0 33 ............................ CGTCGTTCGAGAAGTACGCGGACTACGGCGCGT 3134290 28 100.0 33 ............................ GGGCGGCACGTCCACGCTCGGGTCCGGCACCAC 3134229 28 100.0 33 ............................ GACGATGCGCACCACCGCGGCCTACGACGTGGG 3134168 28 100.0 33 ............................ GGACGACGTCACCGTCGAGACCAGCGACCCGAC 3134107 28 100.0 33 ............................ GCCTCGATACTCGCCCGGCTCGGGCAAGTCCGG 3134046 28 100.0 33 ............................ CTTCGCCCTCAGTGCCGACGGGTGGGAGCCGCC 3133985 28 100.0 33 ............................ GGCCGCGCGCGGAATGGGTTGGCGCGTCTCGGA 3133924 28 100.0 33 ............................ CGCACACGTCTCGGCGCCGGTCGGCACCCGCGC 3133863 28 100.0 33 ............................ CCACCAGCCGCGAACGGACGCTTGATGTACGGG 3133802 28 100.0 33 ............................ CGTCAGGTCGAACCCGGCGACCGGCTGCTTGCC 3133741 28 100.0 33 ............................ CGCCCACGTGCGCGCGCAAGCCATCATCAGGCG 3133680 28 100.0 33 ............................ CCACTCGGCGGGCGGGTGCACCGGGACAGCGGA 3133619 28 100.0 33 ............................ CCCCTGCTGGAAGGCCGGCGAGTTCACTGCGTC 3133558 28 100.0 33 ............................ GGTGTGCCCCGGCGACGAGCGCATCCCGCAGGT 3133497 28 92.9 33 ........................AT.. CGCCGACCTGGACCAGGCTCGCGGCCGAGCCCG 3133436 28 100.0 33 ............................ GGTGTGCCCCGGCGACGAGCGCATCCCGCAGGT 3133375 28 92.9 33 ........................AT.. CGCCGACCTGGACCAGGCTCGCGGCCGAGCCCG 3133314 28 100.0 33 ............................ GCCCCAGGTCGACGCCCTGGGTCGGGTGATGAC 3133253 28 100.0 33 ............................ CCCGAACCCGCCCCCGGCGTCGGTGATCCCGGG 3133192 28 100.0 34 ............................ CTCCTGTCCGCTATAGGGATTCAGCGCGTTGGAG 3133130 27 89.3 33 T...-..................A.... GCCCGCGGGATGACCGACAAGGACCTGCGGTAG 3133070 27 89.3 34 T...-..................C.... GGGCGGGCACGTCCGGCTCGTGCCGCTGCCGGAG 3133009 27 89.3 34 T...-..................C.... CTCGCTGGTGTTCGAGTTCGCGCGGCTCGTCGTG 3132948 27 82.1 31 T...-.................A..C.A CGTGGGCGGCTACGACTGGTGGCCGCTGAAG C [3132927] 3132889 27 85.7 34 T...A...-..............A.... CCTGCCGCGACCCGATCTGCCATGCCGGATCTTG 3132828 27 82.1 34 T...-......A.G.........A.... GTACGTCGCGCCGAGCAGCGGCGGCTGGTCCGAG 3132767 26 82.1 33 T...A...-............-.A.... CACCAACACCTGGATCGGCGGCAGCGTCGAGGG 3132708 27 78.6 33 T...-.......C..C.......A...C CAACGGCATGAGCCAGCTCTGGCCGGCGACGCC T [3132692] 3132647 28 82.1 33 ..GC........C...T......C.... GGCGGGCCCGGGCACCGACGGCGTGGCAGCCCT 3132586 28 78.6 0 .C.A...T....C.T........C.... | ========== ====== ====== ====== ============================ ================================== ================== 34 28 94.9 33 GTCTGCCCCGCGGTCGCGGGGGTGGAGG # Left flank : GGACGACGTGCTTGCGGTGCCAGTTCTCGTGACGCAGAACCATCGAGGGCTGGAGACCCATGGCCTGCGTGAGGTCTTGGTTCGGGGGCAGGGGCCCGAGGCGGTGCGCCTGGTGCGGGAGGGACACGTCAGCGTCACGGCTCCGCGGCGAGACAACCTCAACTCAGTGCGGAAGCTGGTGCTCCAGCGCGTGCTGGGCCGGTCTGCTGCCTGGACCACGCAGGTTCCGGTGCCGGCCGAGCCTGGGCGCCTCCTGGATGAGTGTCAGCGTCTGGCCGCGCAGCACGGGGCAGAGCTTCAGGAAGTCACTGTGCACGACGTGGCCAGGGACATGCGCGCGCCGCGGGTGGAGTTCCACCCCGGCCTCACTCACGTCTCCTTGCTCCTTGATCGGGAGGTCGCTGGCCCGCTTCAACTAGGTCCGTTTGGGCTGGAACCCGTGGGCGCGCGAACTGAATGAGAATGCGCCATCAGTCGCGCGTCGTTGCAGGTCAGGAAGT # Right flank : GTGCCGTCCGTTTGAGTCAGCGCGATAGGGCTAGCTCACCCCGCACTCCGTGGTCGAGGTTCGTCCGGCCACGCCGGGTCGATCACTGCCGCGTTCACCGCGCGTTCTACAGAGTCCCGGGGCGGGGCTGCTGGTGCGGGCCGTACGGATAGCCCGGGTCCTCCGGGAAGGCGCCGTTGACGTCCCAGGTCAGCTGGTACGCCGGCACCGAGAACTCCGGCGGCCGCTGGTAGAACCGGTTCGCGCTGAGCAGCATCTCTCCCGGGTTGGGGAACTCCTCGACGCGCGCTCGACCGCAGCCGTCGCCGAACTTGAGGATCTCGCCCGGCATCATGATCTTGCCCGCCTTGACCTCGGCGAAGCACCAGTTGAGCATCCCGCCGGCCGATTGCGGGGCCAGGCCGAACACGATCAGCTCCGGGTGCCCGAGGCCGAAGAACCCCGTCGAGTAGCAGAAGCTCGCCGATCTCGTCTCCGGCTCTGCGCAGACGTACTGCAAG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGGTCGCGGGGGTGGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [40-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //