Array 1 184574-185005 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWTT01000002.1 Pasteurella multocida strain SH05 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 184574 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 184640 36 100.0 30 .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 184706 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 184772 36 100.0 30 .................................... TAAACCACTAACCGATAGCCAATTATTAGC 184838 36 100.0 30 .................................... AAAGGTGTAAGGCTTGTTGAGTATTCTAGA 184904 36 100.0 30 .................................... GAAGTGCGACAACACAAGCCCATGATGCAG 184970 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : CGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : TCTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 82404-84862 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWTT01000001.1 Pasteurella multocida strain SH05 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 82404 28 100.0 32 ............................ AAGCCAAGATTTAAAAGCCGTGTAATTATTCT 82464 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 82524 28 100.0 32 ............................ ACAAGTTTTATCTAAGAATTGGCGCATTTCTG 82584 28 100.0 32 ............................ CTCTTGTTTTTTCAATCTGATCGTTTTGTCAG 82644 28 100.0 32 ............................ AGCAGGCATAGAAAGATCTGGAATTAAATCTT 82704 28 100.0 32 ............................ TCTTTTTACTCGTTGTACTGAAATTTTTTATT 82764 28 100.0 32 ............................ AATCCCCCTAGCACGACGACATCACCACTTTT 82824 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 82884 28 100.0 32 ............................ ACAAGTTTTATCTAAGAATTGGCGCATTTCTG 82944 28 100.0 32 ............................ CTCTTGTTTTTTCAATCTGATCGTTTTGTCAG 83004 28 100.0 32 ............................ AGCAGGCATAGAAAGATCTGGAATTAAATCTT 83064 28 100.0 32 ............................ TCTTTTTACTCGTTGTACTGAAATTTTTTATT 83124 28 100.0 32 ............................ AATCCCCCTAGCACGACGACATCACCACTTTT 83184 28 100.0 32 ............................ AAATGGCTATCTTTTAACAATATTGAAATAAC 83244 28 100.0 32 ............................ TTTTGGATCATCTTCTTTCACTTTAAAGCGGT 83304 28 100.0 32 ............................ TGCTTTTCCTTTCATGATTGTGATCTTAATCA 83364 28 100.0 32 ............................ ACTACATAAAATCACCGCCACAGTTGCTGTTG 83424 28 100.0 32 ............................ ACGTGAACCAGACTTAACTCTAAGAGTTGGAC 83484 28 100.0 32 ............................ TTTGCGCTGTCGGCGTCCTGTTTCTGTTTTGA 83544 28 100.0 32 ............................ AAGTTGTTATATTAAACATGAAGAAATGAAAC 83604 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 83664 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 83724 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 83784 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 83844 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 83904 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 83964 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 84024 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 84084 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 84144 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 84204 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 84264 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 84324 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 84384 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 84444 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 84504 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 84564 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 84624 28 96.4 124 ............G............... TCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACA 84776 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 84836 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 40 28 99.5 34 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 393304-390574 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWTT01000001.1 Pasteurella multocida strain SH05 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 393303 28 100.0 32 ............................ ATAGATGAGGCAGAAGCTAATGCAACGGTACC 393243 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 393183 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 393123 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 393063 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 393003 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAA 392943 28 100.0 32 ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 392883 28 100.0 32 ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 392823 28 100.0 32 ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 392763 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 392703 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 392643 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 392583 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 392523 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 392463 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 392403 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 392343 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 392283 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 392223 28 100.0 32 ............................ GCCATTTACTCGACGAGTTGCCTTTTCTACTG 392163 28 100.0 33 ............................ AGAAATGCTAAAAAAAATGTTAGATTTTTACAA 392102 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 392041 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 391981 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 391921 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 391861 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 391801 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 391741 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 391681 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 391621 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 391561 28 100.0 32 ............................ GTTTGAGAAAAAGGTGCTTTGCTCGACTTGTT 391501 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 391441 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 391381 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 391321 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 391261 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 391201 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 391141 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 391081 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 391021 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 390961 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 390901 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 390841 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 390781 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 390721 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 390661 28 100.0 32 ............................ GCAAGTGGCACTTGTGCGATTGAGCCGTATTT 390601 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CGGAACAGAATTTATTGCTTAATGATTTGGAAGGTAAACAGCATAAGTTAATCCAAGCAGATTGCTTACAATGGTTAGCCCGTTGTGACCGTCAGTTTGATCTGATCTTCGTCGACCCACCGACATTTTCTAATTCAAAACGGATGGAAGATAGCTGGGATGTGCAACGTGATCACATTAAGTTAATGACCCAGTTAAAACGCATTTTACGCCCAAACGGCACCATTGTGTTTTCCAATAACAAACGTGGCTTTAAAATGGACGTTGAAGGCTTGGCTGCGCTTGGCTTAAGTGCGGTAGAAATTTCTGCAAAAACCTTGCCATTAGATTTTGAACGCAATAAGCAAATTCATAATTGTTGGGTGGTGAGGCTGAAAGCCGATCTGTAAGCCAGCGAACAGATAACTTGCCTTTTGTAAAATTAGCGGTACACTGGTTGTACCGCTGATTTTTTAAATGGCTTAGAAATTTTTAGTTTGAATTTAAGGGCTTGTCCCTTT # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //