Array 1 3963438-3964502 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629701.1 Allokutzneria albata strain DSM 44149 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3963438 26 92.9 33 ........--.................. GGCGTCCATCTGGGCCGCCACCTGGTCGCGGTC 3963497 28 100.0 33 ............................ CTACAAGCACGGCACGCGCACCCCCGCACTGGA 3963558 28 100.0 33 ............................ GTAGTCCGCGGTCGCGACGTGCATGCGCAGCGC C [3963563] 3963620 28 100.0 33 ............................ CGACAGACCGCGCTCCGCGTAGCGCGCGGTGAG 3963681 28 100.0 33 ............................ CACCTGTCCGTGCGTCGTGCCCAGGATCCAGCC 3963742 28 96.4 34 T........................... GGCGCTGCGCAAGCGCTACCAGCGAGCTTGGGGT 3963804 28 100.0 33 ............................ CCGGCCAGAAGGTCGCCACCTTCCGCGACCAGG 3963865 28 100.0 33 ............................ CGCCGCCCGGATCGCTTCCGCCTGGCCCGCGTG 3963926 28 100.0 33 ............................ CGACCGACAGCGCCGAGAGGTCGACGGCGCTCC 3963987 28 100.0 33 ............................ GTCGCTGGCCCGCCTGCCCTGTGTTCGGGCTGT 3964048 28 100.0 33 ............................ GTCGAACAGGGCCGCGCCGTCGGCCACGCTCCA 3964109 28 85.7 32 ....................ATG..C.. AGCACGAGCCTGCCGATGATCTGGTCACCGCA 3964169 28 92.9 33 ......G.G................... GCAGATCGACATCCGGATGGAGTTCGCTCGCGC 3964230 28 96.4 33 ...........................T CGCGTGGCGGCACTGCTGGACCTCCCGCACGAG 3964291 28 96.4 33 ...................A........ CGCTGGCTGCGCCGTCAGGTCGCCGACACCGGC 3964352 28 96.4 33 ...........A................ CAGAGCGATGATCAGCGAGCGGGCTGTCGTCTT 3964413 28 92.9 34 ........G...............T... CTTCAGGCTCGCCTCGCGTTCCCCGTTGTTGCGG 3964475 28 85.7 0 .....................G...CAG | ========== ====== ====== ====== ============================ ================================== ================== 18 28 96.4 33 CTCTTCCCCGCGCGAGCGGGGATGGTCC # Left flank : GGCCGGCCATCCTGCGTCTGGCCAGACTTCCCTGGCTGGCCAAGCGAGAGGCACCTCATCACCTCTTCCGGCTGCAGAGCGCGGTAGGCCACCTACTCAGCTCGCCACAACCCGACACCGGGCTCACACATCTGGCTGCCCAGGCTCGAATGTCGTCTCGATTGGCCTCGATGAACGGATGGTCGCGATCCGTTCCGCTGGTTGAGGTGGCTCGTTCCAGTAGCACGCAGCTAGGAGAGAAGCCGATGGTGATCGGGGCGCGGGTGCCGTTGACACCATTGGCGATGGAGCACCCGAAGCCGCCGCAGTGAGGGGGCGTGACAGCATCGGTGTTCTGCGTGAGAGGAAGCCCTTGCTCGAGACCGTTCCCGACCGTTATGCATCCAGCGACCACAGCGCGATGCTGAACCACACAACGGCCGCACACCCTACCGTCCTACGACGGCCACAAACCCATGCAAAATAACGGAACCAGCCACCAAACCTGCAGTTCAACAAGC # Right flank : GGCGGGAAGTTTGCTGAGTCCGCCGAGCAGGTTGCCCTCACGCACCTTGCAGGTCGGAGAGCCGCGAGACGTTGTAGTCCCGACAAATCCGTGAGAAACACCCTGTCAACGACACACGCTGCTCGCCCAGGGTGACGCTTCATCACGTGCTCATCTACATGCTGGTCGATCTCTGCTGAACTTGGCACGGCTCAGCGTCGTCCGAAGCGGCGGCGTTTGCTGGCGTTGCTCCAGCCTTTCGAGGCAGGTACGGCTGGATCGGCGTCATCGGGTTGAACGGGGCGCAGCATCAGGTTGATGCCCTCGTAGTCCACGGGGATCCAGTTGTGGTCGTGGACTTGGAAGGCCAGTCCTTGTTCGTTGTCCGCGCCGTGGACCATGATGGCTCGGCCGGTTTTGACCATGTCCACGACACGGGCCCACATCAGTCCTCGCACGTGGGCGCTGATTGTGCCGACGAACACTCCGGGTGAGATTTCCAGCAGCCATCGGGTGAGGTG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3966832-3967594 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629701.1 Allokutzneria albata strain DSM 44149 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3966832 28 100.0 33 ............................ CCTTTGTGCCACAAGGGAAACCGGAGGTTCGCC 3966893 28 96.4 34 ......................G..... GGTGGCGCGGTACTGCCGGATCTCGCCGGGCTTC 3966955 27 96.4 33 .....-...................... CCTCTCTCGGGGGCGACGGGAGCTGGAAGCCCA 3967015 28 96.4 34 ........................A... TGCCTGTCGGCACCATAGCCGATGGCGTGCCTCG C [3967020] 3967078 28 92.9 33 ..........................GT GCTGGCCGGTGAGCTGGCAGAGAACTTCGGCCC 3967139 28 92.9 33 ...........AT............... CAGGCTCAGTGGCTCGGGCTCGGCGAGCGCCGT 3967200 28 96.4 33 ..................A......... ATCGTCGGGACGGCGTTTCAGTGCGACTAGGTT 3967261 28 89.3 33 ......................C.T..A CCCGCTGGTGCTAGCGGTTGTCGTAGTCGCGCA 3967322 28 96.4 33 .A.......................... CGACTGGGAGAAGCTGGCCAGCACCCGCTTGCG 3967383 28 96.4 33 ........................T... CAGCTCGGCCTCCCCACCTACGGGACCAAGGCA 3967444 28 100.0 33 ............................ CAGAGCGAGCTGATCCGGGTCGATGACGGCGGC C [3967455] 3967506 28 100.0 33 ............................ GACCGAGCGGCGCCCGGACGGGAGCGAGAAGCT 3967567 28 92.9 0 ..........T.............T... | ========== ====== ====== ====== ============================ ================================== ================== 13 28 95.9 33 CTCTTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CGCCGTGGTTGGCGCCGGGCGCGGTGAAGCTGTGCGAGTCGTGCGCGCTCGGCGTGAACCGCTCGGAACCCCATGGATCGTTCTGCCCGTTGACGAACAGGATTCGCTGCGACTGCGTGCGCACGAGGCCGTGCGTCTTTGCCTGCACCGCCGTGGGTGGTGGTCTGCCACTTCTACGACGTCGAGTCCGGCCGGATGGAACTCAACCAACGAGGCCGCAAGTCGAACTACGAGCGGTTCGACATCCCAATCGCTCGTGATGGTGGTATTGCCGATCTCCTGACCGAAGCACACCATTCCGATCGCAGGTTCGACGTCGTCATCTGCGAATCGATGACCTGGATCGCGCGCAAGATGTACGAGACGCTGTCCGTGTACACCGGCTTCCAGGTGTACAACCGTCGTGCTCGCCGCAGTTGGGGCGGACGAAACAAGCCGAATCCGCCGGAGATGTGGATCTGGTCAAACGAACCAGCTCACGAGCCGCTCATTCCGAAAGC # Right flank : CCAGCTTCGCCGAGATCCAGGCGGCCTCCGGGGCCTCTTCCCCGGATGTCAGCCACGGCGTGCCGGCGCCAGGGTCAGCAGGCCGCAGCCGTATCCCTTGGCGGGGCCGATGCCGTTGATGAGGCTGTGCCGGAACAGCTCGACATCGTTGATCTCCAGGGTGCCTTCGAACACGGCGGTGGCGAGGGTGACTGTGGCGTGGTTCCTGGTGAACTTCAGGACTTCGCGGCCGCGGACGGCGACGTCGGGTTCCTTGTGCGCTCCGGCGGGGATGGTGAATCCGTTGCCGGGGGCGCGGTGGAGCAGCCATTGGGTTTGCTGGTCGACAGTGACGTGGCCGAAGCGCTGCGATCGGGTGGAGTCGCTGGTTTTACGGCGGTTGCCGACGGGGTTGGCCTTGAGGCGAAAGGCCCATACGTCTCCGGTGTTGAGTTTGGCCAGCAGGGGCGTGTAGTCGCGGGTGTCCCAGGTGTGGGTGGTGGGCCAGCCTGCTTGCTCGA # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3975614-3976495 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629701.1 Allokutzneria albata strain DSM 44149 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3975614 29 100.0 32 ............................. ACGGTCCGGCGCCGGACCGCTCCGCACGTGTG 3975675 29 96.6 32 ............................G GCCTGTGCCAGCAAGGAGAACCACGATGCCTG 3975736 29 96.6 32 ............................G GCGATGCCGAAGCGATCGGCGCCGGTCATCGT 3975797 29 100.0 32 ............................. GGCCGGGAATTGGCTGGCCAGCAAGGACGGGC 3975858 29 96.6 32 ............................A TCGCTGGTGACCTCGCGGCCGGTCGCATCCCC 3975919 29 96.6 32 ............................G TCCTCCAGTTTGAACTGCGCGTTCGGCGCCGG 3975980 29 96.6 32 ........T.................... TCCGCTACGGCGTCCCGCTGCCGATCCTGCCC 3976041 29 100.0 32 ............................. AACCCGCACATCGATCCCGTGTATCTGCACGG 3976102 29 100.0 32 ............................. TCCGCGGACAGAAGCACGAGGTTGGTTGCCTG 3976163 29 93.1 32 .........A..................G TGGTTCGTCGCCGCGACGACCCTCGCCGAGAC 3976224 29 100.0 32 ............................. ACCACGATCATCCCGGCGATAACCAGCGTGGG 3976285 27 89.7 32 ...........A.........--...... GCGTTCAGACACCCAAGAGAGGACACTGGGTG 3976344 29 96.6 32 ...........A................. AGCTGGTCCCGCTGCTCATCCGCCAGGGCGAG 3976405 29 96.6 33 ...........A................. TCCACGGTCATCGCCGACCCAGTCGGCGATGAC 3976467 29 86.2 0 ...G.................A..A...G | ========== ====== ====== ====== ============================= ================================= ================== 15 29 96.3 32 CTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : CAGAAACCCAGCCACCGCACCGGAATCATCCAGATGCTGGTGCAACGGCAGCCACCCCGTGACAACCCCCCGCTCATCACAGACCGACTTCGCCCACACCGACAACACACCCGCCCGATCCAGCATCGCCCTCCGATCCCGACAGCCAGACGCAGCAGCGCCGTCCACGCGACCTGGATACTCCAGGGGTCTGACACTGTTACCGGCTCAGCGCGCATTCCCCCGATCGAGGCAGCTCTGCTTGCCCGGAACCCAAATTCATCTAGAGCGCGGCCAGGTTGCCCGGACCGCATATCCCCTGCCGAGTCGTCATTCGACGATGCGCTCCAGTGCCCGTACCGTCTGCGCAGCAACCGCTCCCTCAACGACCAAGACAGCCAACATCGACGTCACCTGGCCACCCACGCCCAAGCGAAAACGCCCGCCACAACCAGTCCGAGCACCCCACGAAACCCATGCAAAATGACGGAACCAGGCGCCAAACCTGCAGCTCAACCAGT # Right flank : GTGGCTGCGTTCGTGAAAGTGTTGGGCAACGAGGTGAAGCTGAAGGGCGAACGGAACTGTCTAGGAATGTGCTGAACAAGCAGAGCTCGGCGACGATCAGCACGCCAATACGTCCAGCACCGACTTCGCCAGTTGTGCGAGACAGCAAGAACCCGGGCGGCCCTGTCCTCGCCTTTGTCGGTGACAGCACCGGCAACAGACCCGAGATCAACGCCCACTGCTCGCCCGAGAGCAACTGAAACCGCGACACGCCCCGCAGCCTGCCAGCACCCACCGCACGTATTTGTCAGACATGCCCTAGGTCGATGTCACCGTCCTGGGCCGCCATATCGTTGACTTTCTGCCTGATGCGTCGGGCCGACTCGTCCGGGGGCGACATATGGTCGTGACTGGCGCTGGCATGTCTTGGTTGACTGCAGTCCGCTGACTTCCACTGTTGTACGACCGGTCTCCGCCGAGGGTGATCTACCAGCAGCCGGAGGTCATCCGTCCTGCGGCGC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //