Array 1 4164-3886 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCM010000068.1 Prevotella melaninogenica strain SCHI0027.S.11 Contig_68_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 4163 47 100.0 30 ............................................... CGTATGGCTTTTCTTGGGTTGATTAGTTCT 4086 47 100.0 30 ............................................... CTTTGATCTAATATACGAAATTGCACCTTT 4009 47 100.0 30 ............................................... GCAATTGATGAAGAAGTCCGTTCTAAAAAA 3932 47 95.7 0 ..........................................G...A | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 98.9 30 GTTGTACGTGCTAATGCAAAGATACACATTTTGAAGCAATTCACAAC # Left flank : CAATAGAGAAATAATGTAATACATCACTGGGTAAAACGAATTCGGCTAACTGATATAGATATTTTTCTTCCATGATACAAAGGAAAGAAAAATATATTAATTAAGAAAATTTCCCCACCTTTTTTCTACTGAGCCCCTCTTAACACTAA # Right flank : TAGAAAAGCTTTTCTTAGATATTAAACAGAGTTGTATGTGCTAAAGTCTGCAGCACATCTTATTTACTCACAAATAAATTTCACCCCTACGCCTTTTTACCTGACACAAGGGTGAAGATGATGAGGATGCCGATGACGAAAATAAAGAGGAAGGAGCCTAATGCACCGGCATAGATTCTACCTGTGTGTACCTCTAAAGCAAGACTCCAAAGCGACATGGGCTTATCTTTCAATTCTTCTGGCTGTTTTGCGAAGGATGAACCTTGGAAATAGGTTGCTATACATTCCTTGTTTGTGAAGTCAGAACTATAACCAGAGATTGTCTGTTCGTCTGGTGCTGTACCCGGTATACCGGGAGTAGAGACCATAGCATCATTGTAGTAAAGTACGACGTTATTCTTACGATCCCAGTAGAACAGACCATCGAAGGAGCCTACTATCCATGATTTGTTGTTTGCATATTGCCAAACGTTTTGCCCCATAACACTCACTGGGGGTGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACGTGCTAATGCAAAGATACACATTTTGAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 145-2266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCM010000072.1 Prevotella melaninogenica strain SCHI0027.S.11 Contig_72_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 145 47 100.0 30 ............................................... TCGTAATCTTTCATACCATCACAAGCAAGT 222 47 100.0 30 ............................................... TCCTAAGAAATATAAGAGTACTATTTTTGA 299 47 100.0 29 ............................................... TTCTTATCTCGTGGCAAATAGGCGTCTAA 375 47 100.0 30 ............................................... CTAAACGCTCAACTCGTGATAGCTTCCTCG 452 47 100.0 29 ............................................... ATTAGCAGAAACGAAGTCGGTTTCATAGG 528 47 100.0 30 ............................................... CAAGCATAACGACAGTAAGGCGCAAGGTGT 605 47 100.0 31 ............................................... TTGTGTGCGCTTGCGCTGCTTCTCGTACCCC 683 47 100.0 30 ............................................... TGTTAGCAGAAACGAAATCAGTTTCGTAAG 760 47 100.0 29 ............................................... CGTAGGTTCATATTAGCAGTTAGTTCACC 836 47 100.0 30 ............................................... TAGTTTTCAACCTTGTATGCTTGAGTTCCT 913 47 100.0 30 ............................................... TCAAAGCGTTAAAACAGGTCAAAAAGAGTA 990 47 100.0 30 ............................................... TGTAAGATAAGGCAAGTGCGGACGCCCTAT 1067 47 100.0 30 ............................................... GAAGTTGTGCAGAGGTAACAAGACCATTAG 1144 47 100.0 30 ............................................... GTAAGATAAGGCAAGTACGGACGCCCTATA 1221 47 100.0 30 ............................................... AGATGAAGATTTGAGCAAAACATCACCCAA 1298 47 100.0 30 ............................................... CTAAACGCGTATGGGGGCAAAGCCCCCTAT 1375 47 100.0 30 ............................................... TTCCATGAAGTTGTAAAGTATGGTATTCTT 1452 47 100.0 30 ............................................... AAGTGTTAACATATTGACCAGAAACCAGAG 1529 47 100.0 30 ............................................... CAATGATGAAATCATCAGAAGGGCGAGTTT 1606 47 100.0 30 ............................................... TCAAAGCGTGAAGACAGGTAATAAAGAATA 1683 47 100.0 30 ............................................... TTTTGTAAATTTTTTAGTAAGAGGATTAAA 1760 47 100.0 29 ............................................... CCGCTGTTACGTTGTCTAATGGATGTGTC 1836 47 100.0 30 ............................................... TAGGCTCATTCAAAACGTCTTTGCGGTAAA 1913 47 100.0 29 ............................................... TTAATCTGTGCCGTCTGTGCTTCGCCCCA 1989 47 100.0 30 ............................................... TTAATACTAACTCTCCTACTGACATAGTAG 2066 47 100.0 30 ............................................... TAATGGCGAACTAAACAAATATGGAGATGA 2143 47 100.0 30 ............................................... TTTTGTTGATTGCCAGTATGGTATGTTATT 2220 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 28 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCATTAGCACGTACAAC # Left flank : AATCCTTCAATGCAAAAATAAAACTATTTAGGGCTAACTTAAGAGGAGTTCTAGATAAAAGTTTCTTTCTTTTTAGACTTGCCAAACTATATGCCTTTCCCCACTAAATATCGACTGCCCCTTAAGAGGGTCAAGTGAGTAACCG # Right flank : CTTAAAAGTTATATTTACCTGTATTACAGCAAGTAACAAGACTTTTGTACAAACAAAAAATGCAAAACAAAAGAGTCCTATCACAATGATGGGACTCTTTTTTAGAATAATTCTAGTTGCTGTCCTGGGGCATTAGGGGGACAGTAGATATTTAGTGGGGATAGGCATATATTTTGGCAAGCCTAAAAAGAAAGAAACTTTTATCTACAACTCCTCTTAAGTTAGCCCTAAATAGTTTTATTTTTGCATTGAAGGATTCAGCTGCAGCGTTTGTAGATCTGTTAATATAAAAGTTAAGTATGTCTTCGTAATGCTCGTAGAAAGTTGCAGCAATGACATTAAAGGAATGAAAGCCAGCTTCTGCGACATTATTATACCATTTTGCCAATGATAGTCTGGCTGCATCTTTGATAGTATTCTTAGCAAAAATCATTCTTAGCGAATGTGATAAACCGTAAGCCTTCTTAATGTCAGGATATTCTCTGAACAGTATTTTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCATTAGCACGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //