Array 1 11140-9912 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNA01000048.1 Photobacterium phosphoreum strain AK-8 CFSAN065478_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11139 28 100.0 33 ............................ AATTTGGAATTCAAATCCGGCAATCTTTTCTTT 11078 28 100.0 32 ............................ AACTGGAAATGCTTCCGCTTCACTATCCACGC 11018 28 100.0 32 ............................ AAACATATGAACCAAGTGGTAAGCCTGCCAAT 10958 28 100.0 32 ............................ CGGTCGCCCTCGCGTACCCCGTGAACGTCAAC 10898 28 100.0 32 ............................ AAAATCGTAATCAAAATGAATTAGCAGTTTAC 10838 28 100.0 32 ............................ TGCGCCAAGTAAAATAAGCTGACCATAATGAC 10778 28 100.0 32 ............................ TTATCGCAGGGATGCGCAGCAGTATTGATCAG 10718 28 100.0 32 ............................ TTAACCAGTTTGTTGCTTTCCAGAACAACGGT 10658 28 100.0 32 ............................ AAGTAATCATTACTGCAATATCTCACCTAACA 10598 28 100.0 32 ............................ ACAAAATGGCGGTCATTTAACGTAAGAAAATT 10538 28 100.0 32 ............................ ACTAAGAAATGGAGAGGAGTAACGCCCGATCC 10478 28 100.0 32 ............................ ATGAGAATAACCAAGAGCTTTAAAAACATCAT 10418 28 100.0 32 ............................ CATTTATTTAATGTCGCTGGCGTGGGTTTACC 10358 28 100.0 32 ............................ GTACGGTTAAGTGTTGTGGCTTATTTTCTGTT 10298 28 100.0 32 ............................ AATTAGACTAGCCATTATGCCACTTCCTCAAT 10238 28 100.0 32 ............................ TAAATGATCAATATTAATCATACTTATTGTGC 10178 28 100.0 32 ............................ AGTGATAGAAGCGGCTGAATCAACCCTGTTGA 10118 28 96.4 32 ...........T................ GACTAAGAACATCTGTTTGATGTGAGCGTCAG 10058 28 100.0 32 ............................ GTCTGATTATTTGGCGGCTAGTTACCCTGCTT 9998 28 100.0 32 ............................ CGCAAAAGGCACAAAACTGGCGTAATTCTGCC 9938 27 85.7 0 ....................G..T-..T | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCTCTACTTCATTGGCTGAAAATAAGGGTGTTCCGCCACCACCACAAAAACCAACTAGCACGCCTGCTTTAGCTAATTCGCGCATTGCAGCTTGAGTAATAGAAGTGCCAGTTCCCAACATTATGGAAGTCGTGTTTGCTATCGGGATATTCCAATATAATGATTGCTTACCTTCATCAGTAACATACTCAACCCGTCCACCATTCACAAGCACACGACAATGTTGCAAATAATAAAGATTGGCACGTTTAGAATGAAGAATTGTTTTTAATTCACTAGGAGTGAAAGCCTTAGCGCACATAATATTCACCAACGATAAAAAAAACATTATATACACTTAATTACTGTGCGTTAGAGTGCAATCTCAAAAACCCTTTTTATTTGTTAATAATTCGTTCCATATAAAACAACAACTTAAAATATCAGTTTTAAAAAGGGTTTTTAGTAAAAATTTACTGTTTAGCTTTTATAAGCAATCACTTATACTAATAACGTTTCA # Right flank : TACTGGCAGCAGCCATGGCTTCTTTGATTTCATCAGAGCCATAGCCTTTTGATGAAAGATAAGCATAGGCTTTACTTTTATCTTTAAAATTCGACAAATCAAACCGCTTTTTTGCTAACACTAATTGGCAATTTTCATAAAAATCGACCTCACCTGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATCACTGTTTTGCCTTTGAGCTTTCTCACCAATTTCAATACTTCTGTTTCAAGATCAGCATTCATGCCTTTGATTTTTGCTTTGGTTAATAGCGTATCGGCAGCATCGTGTTCCGCAATCGCTCTTGAAATATCTTGAAAACTGTATCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGGCTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAACTAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 19929-22784 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNA01000048.1 Photobacterium phosphoreum strain AK-8 CFSAN065478_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19929 28 100.0 32 ............................ AATTCTATTTTCACTATTCGGTGCAAAATTAA 19989 28 100.0 32 ............................ TAGTAATACGGGGGGAAAGGTTTTTGCTTGTG 20049 28 100.0 32 ............................ ACTGATAAAAGCGTAACCCGAATTATCTTCAT 20109 28 100.0 32 ............................ ATAATGACGGCCAAATAATTGTTTATTCAGAC 20169 28 100.0 32 ............................ TAATCCCAATCTACAAAAACGGTTACGGCCGT 20229 28 100.0 32 ............................ TACTATTCAAACATTCTAAAGCAAGTTTATTA 20289 28 100.0 32 ............................ TAGAAGAAGTTGATCTTCGTGAAATCTCTATA 20349 28 100.0 32 ............................ ATGTCGCTAATGTTTTGGTATCGCATCGGCAT 20409 28 100.0 33 ............................ CCGACAATTTAGAGCGGCGTTATAAAGTCCCGC 20470 28 100.0 32 ............................ GCATCCAAAATACGTGCTAATTCAGATGGACA 20530 28 100.0 32 ............................ ATAAAGTACCATTTGTTAATAGCTGACTTGTT 20590 28 100.0 33 ............................ CTTGAAACACAATCGGTGTCTTTTAGTGTTGGT 20651 28 100.0 32 ............................ TGACCCTGATTGGTTTCCTGATACTGAGCCTG 20711 28 100.0 32 ............................ ATCACTTCGCGGTTTAATTTGAGCTTATTAGT 20771 28 100.0 32 ............................ AAACACTGCCTTGTGTGGGCTCAAATTTCAGT 20831 28 100.0 32 ............................ TCCAAAGTGATTAAGGGTTAATAAGGAAATAT 20891 28 100.0 32 ............................ ATGGTGGCCTCACCCATTTTGACCACCATCGC 20951 28 100.0 32 ............................ ATTAAATAAATGACGACCAATAATGTCTCCGC 21011 28 100.0 32 ............................ TCGCTCAATTAACGCTAGGATGTCTTGGGTGC 21071 28 100.0 32 ............................ GTATACCAAAACAGGGATTACCTTATTGGTGT 21131 28 100.0 32 ............................ GCACTAAACGATATTATTATTATTTATCGCAC 21191 28 100.0 33 ............................ CTAGTTCATCTCCATAAGCTACTGCCATGTCAT 21252 28 100.0 33 ............................ CATCCTACCACCTGGTAGTCATGAGTCAATAAA 21313 28 100.0 32 ............................ TAGTAAAGATAAGTCATATGTTGACCCTTTTG 21373 28 100.0 32 ............................ GATGTCAACAGTTAGCGTGTAGCCTCGACCAA 21433 28 100.0 33 ............................ AAGAAAGAACAACAACGTGAAGAAGCGAAAGAA 21494 28 100.0 33 ............................ TAAATTAGATGATGTTGTTCTAAAGAAACTTAA 21555 28 100.0 32 ............................ AACTAGTGTGTGGTGTGGGCTATCTCCAGTAG 21615 28 100.0 32 ............................ AGTTAAATGTCTGTTTCATGCGTTGCTCCTTT 21675 28 100.0 32 ............................ AGTTAAATGTCTGTTTCATGCGTTGCTCCTTT 21735 28 100.0 32 ............................ ATCTGACTTGACTCTTCAACTCTCCAAACCCC 21795 28 100.0 32 ............................ AGCAATTGTCATGTACGCCCCTTGAGTTTGAT 21855 28 100.0 32 ............................ GTTCTGGTTCCAGTCGCCGCCCCAGCGTAATT 21915 28 100.0 32 ............................ AAATTGCACGAGCCAAATTATCAAAACTGTCA 21975 28 100.0 33 ............................ TAGTATCTACGATGTGAGCCGAAAAAAATAAAC 22036 28 100.0 32 ............................ TGTTACGAATTCATCAGAGGCCGTCGATGCAG 22096 28 96.4 32 .............T.............. GCATCAGCAAGTGAGAGTGCATTCGATGACAT 22156 28 100.0 33 ............................ CTGACGGATCAATAACGTGGGAAAACTGCCCTG 22217 28 100.0 32 ............................ AATGATTAACACGCCCTCACTGTTAACTGCCA 22277 28 100.0 32 ............................ AGTAAAGAATGCCGCACCGACCATGACCGCGC 22337 28 100.0 32 ............................ AGAATGCGTGCCATCACTAACAGTAACATGCG 22397 28 100.0 32 ............................ ACTTATGCCTAACGGCGAAAAGCAAAAATCAT 22457 28 100.0 32 ............................ AGCTGGTAGTGATGCTAAATACGACGCTCTGG 22517 28 100.0 32 ............................ ACGGCGACCAAGATTTTTTCTTTGACCCGGAA 22577 28 100.0 32 ............................ AACTAAGAAATGATCTGGAGTAACGCCCAGGT 22637 28 100.0 32 ............................ GATTGGATGGTCATACATAGTTGGGACTACTG 22697 28 100.0 32 ............................ AAACAACGACAAAGATTACTGATCCTGAAATG 22757 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACGCGTGTTACGGCTATTATCGCTATTCCAAGTGAGATTAAGGGTTATCAAACCGTTAAGCGCGTACAAGCAAAAACTGCGAATAATAAGCGTAAGCGGTCGATAGCTAAAGGTTGGATCAGTGCGGATGAAGCGATTCATGCAATTCCGAACACAGCAGAGCGTAGATTAACCTTGCCTTATGTTCAAATTCAAAGTTTATCTAACCAGAATACGATGCGGGTATTTATTGAGCACAGCAAGGTGGTTAGTGATGTAACTGACGGTGCATTCAGTAGTTATGGATTAAGTGCTACCGCAACGATCCCTGTGTTTTAAGTGTTGTTTTGATCGTAATAGCAACGATGGGTTAAGTGATTATTCATTTAACCCTTTTTTTTAGCCGCTATTACTTTCATTTAAAATCAATAACTTAAAATTAAAGAATAAAAAAGGGGTAAAAGAGGATTTTTGGGGTTTTATTTAAATGAAACAATCGCTTATTATGGTTAAGCTTCA # Right flank : AAATCTTAGAGTCACACTTCTAATTATTACGAGGCAATTAAAATATAATTTGATGTTCAAATTGCTACTTTAAATAATAAAGCTTAATTAACAGCTGCTTGGTCATGCTGAAATAGAATAATAATTTAAATAGATAAGCATAAAGTCTTCTAATGATAAGCCATATCATTCATATTGTTAATAACTTTTCTATAAACCATTGAAGGTTGTAGCAGCGGTGTTTATGATGCATACACAAAGGATTTGTCGCTGTTCGGAATGATAAATGAAGAAAGAAAAATACAATAATATTGCGGATCATATTTTTAAAGTAGATGCAGTGAAAATAGCAGTTTATGAGGTTATTACGCATAAGATGACAGCATATAGGGCTGAAATTGTGTATGGAGTAACGCCTAACACACTGAGTCGTTATGTTAAAAAACTTAATACCGAGTTAGAGTATCTACAGGCTTTGGGTGTAAAAACTGAATAATGTTATATGAAGTCCAGCGCCTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //