Array 1 540713-539485 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHB01000038.1 Vibrio cholerae strain N2770 NODE_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 540712 28 100.0 32 ............................ AAACTAGAGAGCAGGGAACAAACCTTAGCAAA 540652 28 100.0 32 ............................ ATTCGCAAATCAGCGGATGAAGGCGATTGGAA 540592 28 100.0 32 ............................ TCGGCTGCACTGATGAAGAGATAAACGCCTTT 540532 28 100.0 32 ............................ CTGAAATTCGCCGTGGCGAAATGTTTGTTCGT 540472 28 100.0 32 ............................ ACACAAGAGCCACGGCGTACACATTGATTATC 540412 28 100.0 32 ............................ AAATGGGCGGGCAGCGTTTGGCTTGTAGTCCT 540352 28 100.0 32 ............................ ATCAGAAACTGTTGTTCCTGCTGTGGCGACTA 540292 28 100.0 32 ............................ TTGGTCTAACTTTTCGATTTGCGGACACTCAG 540232 28 100.0 32 ............................ GTCGAATGATTAATCCCGGCTGTTTTACTCCG 540172 28 100.0 32 ............................ ATACATACTTATCATTGTCGTTGCGAAAAGAG 540112 28 100.0 32 ............................ TTCAGCTTATTGTAGATGCGCAGCAGCCTGCG 540052 28 100.0 32 ............................ TCATATTCATCAAAATGCGCTATTGTGCAGCG 539992 28 100.0 32 ............................ ATCTCCGTAGCAACTTCGGGATCGCACGTTCC 539932 28 100.0 32 ............................ TTGATTCCCTCGTATTCACTTTCGGTTATACC 539872 28 100.0 32 ............................ GTATTGAAAGCGGAATGGCTACTCTGACAGCT 539812 28 96.4 32 ...........T................ TGGCATAAGGTGAGGTAATTTTCCAAGTGATT 539752 28 96.4 32 ...........T................ TGAACGGATACGCTCGTTGTTTCAGTATTTAC 539692 28 96.4 32 ...........T................ TTCCCAGCCCACAGCGAGCTCGCAAATCATTG 539632 28 96.4 32 ...........T................ AAGGGTTTAGACTTGGTATCAGTGTATAAATC 539572 28 96.4 32 ...........T................ AGCTTAAACAGTACGTTTTTGCCTTTGACGTT 539512 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAGTGTTTAGTGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTATGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCTAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //