Array 1 3902-2530 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBU01000112.1 Salmonella enterica subsp. enterica serovar Kedougou strain BCW_2715 NODE_112_length_14571_cov_1.33982, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3901 29 100.0 32 ............................. GGCTTTATAAACTGGGCCGCATAGCTTGGGCT 3840 29 100.0 32 ............................. CGCTGTGCTAACAGCCCCATGTCGTATCCCTG 3779 29 100.0 32 ............................. GCAGGTACTGAATCGCGGCGGATTCGGCGACA 3718 29 100.0 32 ............................. ACCCGGTTTTGATAGTCGTCCCAGCTATCTCC 3657 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 3596 29 100.0 32 ............................. TGTCGATATATTCACGTACCTGTCCGGGGTAA 3535 29 100.0 32 ............................. ATTCTACCTGGAGCGATTGCTACGACTACACC 3474 29 100.0 32 ............................. TTACTCGATCATCTAAACACCCCTCCGGACCA 3413 29 100.0 32 ............................. CCGCGTAGAGAGTTGATCTTGTCGCAACTGGA 3352 29 100.0 32 ............................. GATCTGATTCAACATGTAAGAGTCGTACAGGA 3291 29 100.0 32 ............................. CTGCGCGACAAACGCCATACGCAGGAGGAAAT 3230 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 3169 29 100.0 32 ............................. GCCAGTCATTTGCTGGCCAGATCTGAAAAGCA 3108 29 100.0 32 ............................. GCGCTACAAAAACGAGGAATATCGTTAAACGA 3047 29 100.0 32 ............................. TTTTCTTTTCCTGCCGGAACAGCGCTTTTTCA 2986 29 100.0 32 ............................. AGTTCAACCGATTTTTTACACGGCGTTCGCAC 2925 29 100.0 32 ............................. AGCCCAAACTGCGGGATAAAATCTTATTCAGC 2864 29 100.0 32 ............................. AATGGGCGGGCGTGCGGTCCCAGTTCGTTGAT 2803 29 100.0 32 ............................. CTCCACGCGTTTGATCTCCCGCTGGTACTGGT 2742 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 2681 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 2620 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 2559 29 96.6 0 .......T..................... | A [2532] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGACTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6654-7413 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBU01000117.1 Salmonella enterica subsp. enterica serovar Kedougou strain BCW_2715 NODE_117_length_12831_cov_1.41659, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6654 29 100.0 32 ............................. CGGTTGCTGTCGTTGACGGCGTCGCGGTACAT 6715 29 100.0 32 ............................. ATGGAAAATATGAATTTAATGTTTATCCTGGT 6776 29 100.0 32 ............................. CCCCATATCCTTGATGAGGTAAATTTTTATTT 6837 29 100.0 32 ............................. TTTTACACACTGGCTGAGGGCGCATCATATCC 6898 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 6959 29 100.0 32 ............................. CCACGGCGCGATTTGCTGTAGTTCCCGCGTGA 7020 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 7081 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 7142 29 100.0 32 ............................. TGCTGATGGTAGTGTGTTTGTGTTCCATGCTG 7203 29 100.0 32 ............................. TCTGTGTTGCTGCAAAAACGTAGGTGCCAGGG 7264 29 100.0 32 ............................. TAGCGGGAAGTGGAAACCGAATTGAACCATGA 7325 29 100.0 32 ............................. CATTGAAAACTATGTTCATGCCAGCATTTACT 7386 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGCCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //