Array 1 172158-171888 **** Predicted by CRISPRDetect 2.4 *** >NZ_OANO03000005.1 Pectobacterium parvum strain s0416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 172157 28 100.0 32 ............................ AGCAGCAAACACGCATTGGCCGTACCTGGACC GA,T [172150,172153] 172094 28 100.0 32 ............................ GGTAAATCACGCCCCTGTCGTCGCAAGCGCCA 172034 28 92.9 32 G............C.............. AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 171974 28 89.3 32 G.........A..C.............. TTTATCAAACGCGAAAATGCGGGATTCGGGAT 171914 27 75.0 0 G..........TGC........-...TT | ========== ====== ====== ====== ============================ ================================ ================== 5 28 91.4 32 TTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACGCTCTTGTTCTGCGACAGAATCTGGCTAATCAGCGTGCTGAGTCCGAGTAGATCTGCCACGGCGACTTTTAACAGATAATCGGCATCACCCGTGGTTTTATAGGCGTCGATGATGGCGTCCACTTCCCCCAGCATCTGGTGAAAGCGCTCAACGTATTCGCTGGTGTGGTTGATCAGTCGCACTTCAATCAACCCCAGACATTCCAGCCCGACCGCGTTCGGCGACAGGCGGGCATGATAGCCAAGAATCATCTGTGCCTGCTCCAGTGCGATGCGACGGCGGGAACACTGCGAGGCGGAAAGCCCAACCAGATCGCTCAGTTCCTGATTGGTCAAGCGGCCGTTCGTCTGTAGCAGCGTCAGGATTTTCAGATCGAAGTCATCAATGTGGTACATCGCGTTTCCTAAACAGTATCAGGCAGTCGGCCAAACAGACTACCAGCTTTTTAAGCCACGTTGCCTATGAGTTTTTTATTGCTGATTTTCAGCACGTTTTAT # Right flank : CTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGATGTTCGCACAAGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATTGTCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACTGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATACCTGCATCAGCCCGACGTTTATCTGGCGCAGTGCGATAACCTGCGCCAGTATTTCGTCGGTCACCAAATGGAAACCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 288039-287400 **** Predicted by CRISPRDetect 2.4 *** >NZ_OANO03000007.1 Pectobacterium parvum strain s0416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 288038 29 100.0 32 ............................. CTAGCGGCGAATATGTCAGAGCAGTAAAATGG 287977 29 100.0 32 ............................. AAATCAACTAGCAACGGCGTTAGTCTAAACAT 287916 29 100.0 32 ............................. ATGGGCGCTGCGAGGAATTTTTTAGTTTTATC 287855 29 100.0 32 ............................. ATGATGCGCTTGATGATGCGTTTCATGCTGGC 287794 29 100.0 32 ............................. AGGACTAAATAACATGAATACTTTGACTAATG 287733 29 100.0 32 ............................. GGCAGATGGACAGAATGACCTGTATGTCTAAC 287672 29 100.0 32 ............................. AGATTGGCATTAAACGCGGACTCCCCTTTTTC 287611 29 100.0 32 ............................. TTTGTGCTCAGACCGCCGAAATCGAGCAGGTC 287550 29 100.0 32 ............................. CTCGGGATGAGAGCGCTTATGTCGTTCAGCTA 287489 29 96.6 32 ................A............ AATGACTACCTTACTAAAACGGCAACAGCTAA 287428 29 89.7 0 ............TT.............T. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGTATTACGCCACCGCTCCCGCCGGATGATGCCCAGCCACCGGCGATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGCCTGCGCGGCAGGCTGGCGGTGTGGTTATTGGAAATCCGCGCAGGCGTGTATGTCGGTGACACTTCACAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCATGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTCCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTATTATAAAACAACTCTCTATCTTTAGA # Right flank : ATGTGAAATGTAAATTACACATATTTCCATATTGTCAACTTGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGATAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCGCCTCTCGTAAGGATTATGAGGATGCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //