Array 1 13457-11598 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGY01000024.1 Escherichia coli strain 586 BN4_586_1_(paired)_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13456 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 13395 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 13334 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 13273 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 13212 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 13151 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 13090 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 13029 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 12968 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 12907 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 12846 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 12785 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 12724 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 12663 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 12602 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 12541 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 12480 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 12419 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 12358 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 12297 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 12236 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 12175 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 12114 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 12053 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 11992 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 11931 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 11870 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 11809 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 11748 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 11687 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 11626 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40405-39156 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGY01000024.1 Escherichia coli strain 586 BN4_586_1_(paired)_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40404 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 40343 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 40282 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 40221 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 40160 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 40099 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 40038 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 39977 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 39916 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 39855 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 39794 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 39733 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 39672 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 39611 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 39550 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 39489 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 39428 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 39367 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 39306 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 39245 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 39184 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //