Array 1 133133-133477 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHTK01000024.1 Bifidobacterium longum subsp. longum strain MCC10123 contig0024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 133133 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 133199 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [133205] 133283 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 133343 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [133391] 133391 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 133448 27 81.5 0 C.............C.....C....CG | GC,C [133465,133469] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3614-3953 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHTK01000014.1 Bifidobacterium longum subsp. longum strain MCC10123 contig0014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 3614 28 100.0 33 ............................ TGTCGGCGGCGGTCATGCTCAGGTTAGGACTGA 3675 28 100.0 33 ............................ TAGGCAGAATCTAATTGCCCAATTTTGGCAGTA 3736 28 100.0 33 ............................ TTCATCAGGAAAAACGACACCAAAGCCAAAGCA 3797 28 96.4 39 .......T.................... TAAACCTCGATAGAGCGATTGCGGTATATGACCTACCCC 3864 28 92.9 34 .......T.................A.. GCGGGGCGACATGCCGTAGAGCCAACGGAAAGAC 3926 28 89.3 0 ....G.........T..........A.. | ========== ====== ====== ====== ============================ ======================================= ================== 6 28 96.4 35 ACCTACCCCGCACACGCGGGGATAAGCC # Left flank : CGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGGACTACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCATCAGCAAGGCAACCAGTGCAAACCCATGTACGTGGAGGGTGAACACTTCAACACGGCTTTACGCACGTTGGCCGATACCGGCGAAGACGTTGACGAGCTCTACAGGAAAATGATGAACGCGCGAAACATGCAGGAGGCCGCACCGTTCTGTCTACGTATAATCCGACTGTTTAACGAGTATGACATTCCATTGGATCACGCCCTGCTGGCATTGGATCTGGCGAGACTCAGCAAACCGGACTCGGCAAACACAGTGCGGCGCGACTGGGGCCGACTGCTCAACTGATTGTCCGCCGGCCTGCGATCAATGGACAATCAACTCAGGAAACAGGTATGCAATTTGCATAGACGGCTCACGCATGACCTCAAAAACGTTGAAAACTAAACT # Right flank : CCCTGTGAGCCACTTTTATTGACATCTGACTTTTCTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAACCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACGACCGGCTACACAATGCCATCACAGCCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCACACGCGGGGATAAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 6492-7614 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHTK01000014.1 Bifidobacterium longum subsp. longum strain MCC10123 contig0014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6492 29 96.6 32 ..T.......................... GAGCTCCTATGTCGTTCAGTCCTAACCTGAGC 6553 29 86.2 31 .....................TA..C.T. GTATGAGCTGCGCGTCACCGCCACAGCGTGG 6613 29 100.0 32 ............................. AACGGTGAAAAGTACGACCGTAACGCTGAAAT 6674 29 100.0 32 ............................. AGTCTACGCCAGAATCATCGATGTACTGCCCA 6735 29 100.0 32 ............................. GAACTCCGCGGCGCGGTGTTTGACCTGATTCC 6796 29 100.0 32 ............................. GCTGACGCGATTGTGGAACGGGATGCCGAAGG 6857 29 100.0 32 ............................. AAACATGGCACTGCCCATCCAAGTAAATCCCA 6918 29 100.0 32 ............................. CCGGCCGAAGACGCTGACAAAACGGCGCAAGC 6979 29 100.0 32 ............................. TTGGGAGTCAGCGCGCCGGGAGCGGTTTCCAT 7040 29 100.0 32 ............................. TGTCCCCAACGGACGGGAAACCGTTCCAGCGG 7101 29 100.0 32 ............................. CGACTCAGAAAATTGACCCGGCAACCATGCAC 7162 29 100.0 32 ............................. GATATGAAGGGTGTGGATGGCGTCGTGTTATG 7223 29 100.0 32 ............................. GTCGGGACTCTTCTCCGTATATCGTTCATCAA 7284 29 100.0 29 ............................. GTACTCACAATGGCCGACGAAATGAAGGA 7342 29 96.6 32 ............................T GACGGTGCCGTCCGGACGCGTCAACGGATGGT 7403 29 100.0 32 ............................. GAGGTGATCAAGGTGGACGACGAAATCACACC 7464 29 100.0 32 ............................. AACACCCAGCAGGTCGAGGATGAAGATCGGAA 7525 29 100.0 32 ............................. TACACGCCTGTGAAGCTCGTGAATCCGACCGT 7586 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 ATCTACCCCGCACACGCGGGGATAAACCG # Left flank : CAGCGACCTCGCAGCCCTCCGATTCGGCGTGCAACCAGTCCACACAGGCCCACGGTTGACGGACTTCCAAACCATGGGCAAACGAGCTGACGGCAAACCCAACCCGTTGGAGACGAAGGAATATCTACAGGATTCCACATTCACCGTCGGCTTGGAATCCACGGACCTGCGACTCCTCATCAGAATCGGAGCCGCAATCCAACACCCCGTATACATGCCATACCTAGGACGACGCGCCTGCCCACCAGCCGGCCCTATTCGAGTCGGACTGGTCGACAAACCGTTGGAACAGGCATTCAAAGGCAAGGAACGGATACATGTTGAGACCGTCGACGGCGTGGAAGCACACTGGGATCAACCGGCCAACAACCGAGTATTCCAGGCACGCTACTCCAACGCCATCGACCCGTTATTTAATGCGGTAGCCGAAGCGCAGAATGACTGAGCGAATCAAATATTTCCGCACTCATGCAGTCACGAAATCCTTTGAGAATGCAAGT # Right flank : CTTGGAAGCGGGTGCTTAAAATATTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATCGACAACGGTGTCCGCATGGGATCGGTCCTGTCCGCCGTTTTCGAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //