Array 1 12574-14192 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXH01000034.1 Salmonella enterica subsp. enterica serovar Braenderup strain BCW_2854 NODE_34_length_32334_cov_1.37399, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12574 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 12635 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 12696 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 12757 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 12819 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 12880 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 12941 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 13002 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 13063 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 13124 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 13185 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 13246 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 13307 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 13368 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 13429 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 13490 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 13552 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 13613 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 13675 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 13736 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 13797 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 13858 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 13919 29 100.0 32 ............................. CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 13980 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 14041 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 14102 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 14163 29 89.7 0 A...........TC............... | A [14189] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20277-21402 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXH01000057.1 Salmonella enterica subsp. enterica serovar Braenderup strain BCW_2854 NODE_57_length_25061_cov_1.35445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20277 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 20338 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 20399 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 20460 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 20521 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 20582 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 20643 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 20704 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 20765 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 20826 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 20887 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 20948 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 21009 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 21070 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 21131 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 21192 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 21253 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 21314 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 21375 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //