Array 1 2577024-2568752 **** Predicted by CRISPRDetect 2.4 *** >NC_015500.1 Treponema brennaborense DSM 12168, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2577023 32 100.0 33 ................................ TTCTGCCATTTGTTCAATCTCCTTTTCTTCCGG 2576958 32 100.0 33 ................................ AGGTGAGGAATATTTCAAAGGACTCACCGCCGA 2576893 32 100.0 33 ................................ ACGTCTGACTGTGGGAACTGCGACGCGCGACAC 2576828 32 100.0 32 ................................ AAAACGTATGTTGGGAAAATCTAGCACTAAAA 2576764 32 100.0 32 ................................ ACCTCCCGACCCCGAACTGTCACCACGTCCAG 2576700 32 100.0 33 ................................ AGGATTGTCAAAACAAGAACGCCGCCGAATGTT 2576635 32 100.0 33 ................................ GCATAAATGGCGCTGTTATTGTCGCAATTTCTC 2576570 32 100.0 32 ................................ TTCAACCGTCATTTCGTTTATCTTTTTTTTAA 2576506 32 100.0 32 ................................ GTCAAATACGATTCCATACGGGAGCATTTCGG 2576442 32 100.0 33 ................................ GGGTCTGCCGTTCTCGCTTTGTATTGATGCCGG 2576377 32 100.0 33 ................................ TCCGTCGGGTGCGTATAATGATACCGAACCGGC 2576312 32 100.0 34 ................................ CGGGAGAAGTACGCGAGCGTCCCAAATCGGAGCA 2576246 32 100.0 34 ................................ TCGAGCGCGGCAATTGCACCGGTTTGGATGTTAT 2576180 32 100.0 33 ................................ AAAGATAATTGATATTGCGCGTTCAAGTTTTGA 2576115 32 100.0 34 ................................ TTTTGTATCTACCGCGCCGTTGAAAATTACTCTA 2576049 32 100.0 33 ................................ GGTTACGACGGGCTAAAAGGGAAATCGATTTTT 2575984 32 100.0 35 ................................ GATGTTATCGGGGATTTTGCCCGCCAAAAATTCGG 2575917 32 100.0 32 ................................ TGTGATTGTTTTTTTTACAATTTCCATGCCGA 2575853 32 100.0 32 ................................ CATCCACGACCCGCTCGCCACGGTCCGCAAGG 2575789 32 100.0 32 ................................ TGCAATTTTAAAAAAAGACGTGTTAATGGGCG 2575725 32 100.0 33 ................................ GGTGTAGCACGGGAAAACGACGCCGAACGATAC 2575660 32 100.0 34 ................................ ATTGATGACAGGTCAAAAGCCATGCCGCAGCGCT 2575594 32 100.0 33 ................................ AAAATTGACGGGGTTACGTATAGGCAAAATAAT 2575529 32 100.0 34 ................................ TAAGGCCGCTCCGGGTATCGGCCTTATCACGTTC 2575463 32 100.0 32 ................................ TTTGATTATGTCGGACGTTTGACCGCCTGACG 2575399 32 100.0 32 ................................ TATCTCCCATTTTGCGAATTCCGTGATATCTC 2575335 32 100.0 32 ................................ GCTTTTCCCGCGGAAATTTCAAAATCACCCTT 2575271 32 100.0 35 ................................ TCTGTGAATTTGCCGGATCAGCCGAAGACTGGGAA 2575204 32 100.0 32 ................................ GTCGATTTTTACACCTTTGAGCGATTCAAAAT 2575140 32 100.0 34 ................................ AGACTAGGAAAGCGAAACGAACCCCGCCGCTGCT 2575074 32 100.0 32 ................................ CACGCGTCAGCCTGTTGTGATTTCTGAGGTTT 2575010 32 100.0 33 ................................ CGACATGGGTCGGCCGTGCAGGAAAAGCGATGT 2574945 32 100.0 32 ................................ ACGACCTGCGGCATGTCGTCGTTAATACAGTC 2574881 32 100.0 34 ................................ TCACGATACTGAATCTATTAATAAGGATATTGAA 2574815 32 100.0 33 ................................ AATAATCTTGTGGTTTAAATATTCATACTTAAA 2574750 32 100.0 32 ................................ ATTTTTGTTTCCTTTGAATACTATATGGCATA 2574686 32 100.0 33 ................................ GCATTTGATTTTCACACCATCACTACGAACTAT 2574621 32 100.0 33 ................................ TTCGTTCTCAATTACGTGTATCCTTGCTTTGTT 2574556 32 100.0 32 ................................ TAAATAAATGACTATTGAACTCAAATTCTGTT 2574492 32 100.0 32 ................................ CGCCATTGTTAACCCACCAATTCTATGCATTA 2574428 32 100.0 34 ................................ GTCTACATAGTTGTGCCGTGTTGCAGGCAGTACG 2574362 32 100.0 32 ................................ ACAGACATTAGAAACGAACTTTTTCATAAAAG 2574298 32 100.0 35 ................................ TCTATATAAAATAACATTAAATCTCAATTAAAAAA 2574231 32 100.0 34 ................................ TCAAGCTCTATATCATAAACGAACCCGCTATGCT 2574165 32 100.0 33 ................................ ATATACATCAGATATGAAGTCCTCTTTTTGAAT 2574100 32 100.0 33 ................................ TTCCCATTGGGGTTCCACCTGCACCAAAAATAT 2574035 32 100.0 32 ................................ AAAAACAGAAAATTAAATGATTGGTTTAATGA 2573971 32 100.0 36 ................................ ACAAGAGTTAATTGGAATTAAACAATGAAAATAATT 2573903 32 100.0 33 ................................ AACCTGCGGCGGCAGCGGCTCTTTGTACTTGCT 2573838 32 100.0 33 ................................ GCTCCGGTATATAATCGGGCGTTCAAATCTATA 2573773 32 100.0 33 ................................ ACTCCAGTTAAATTGATTACGCAGACGGGTGCG 2573708 32 100.0 33 ................................ AAAAATGCGACAATCGGCGAGATATGCGCATTA 2573643 32 100.0 32 ................................ ACAACCAGCTTTACTGTGCCGTCGTCCAATTT 2573579 32 100.0 32 ................................ AGGGTCTGCCGTGCTTTCGGGGTTAACAATTA 2573515 32 100.0 33 ................................ CAAGAAGCCTAAGGTTTTCAATTTTTAAGCAAC 2573450 32 100.0 32 ................................ TATAATTAAAGGAAATGATTTTGAAGAGATTG 2573386 32 100.0 32 ................................ TATAAACAATAACTTACCATCTCTTTATTCAA 2573322 32 100.0 32 ................................ AATTTCAAAACTCATACTAGCACCTCAATCAT 2573258 32 100.0 33 ................................ TAAATTTTTTATACTCAAGTAGATACTTGACAA 2573193 32 100.0 34 ................................ TTGAGATTTCGGATACATATGTCTAAATACATAT 2573127 32 100.0 32 ................................ ATCAATCCAAGTTTTATTTTCTTGTTGTTTAT 2573063 32 100.0 33 ................................ ATAAATATATAGTTATTTTATTTCTCACGTTAA 2572998 32 100.0 33 ................................ CGTTGAGAAAATTATTATTGCCCGACAAATAAA 2572933 32 100.0 32 ................................ AATTACTATAGTTCCTGCTCTCCAAACAATAA 2572869 32 100.0 32 ................................ TCAATAATGATATTATTAAATCTCTGAGTTGT 2572805 32 100.0 33 ................................ TTCTAGACAATATGAATATTTTAAAATAAAATT 2572740 32 100.0 32 ................................ AGACTATTCAAAAAGTGTTTGATATGATTAAA 2572676 32 100.0 33 ................................ ATTTATGGATATGCGAAAAATTAAAGATCAGCT 2572611 32 100.0 33 ................................ TTCTTGATCTAAATGCATTGACTAATTGTCCTG 2572546 32 100.0 33 ................................ GATATTAGAAATCATATCATTTAACAGAGTTTG 2572481 32 100.0 33 ................................ TTATAATGGTTTTGACGTTAATTTTTTTGCAAA 2572416 32 100.0 32 ................................ TTACCTTGATGATCGTATTCTATTGATTGAAT 2572352 32 100.0 33 ................................ TTGGTTCTATTGTATCTATTTCTCTTGCAATAA 2572287 32 100.0 33 ................................ GGAGTTAGGTTATCAAGGTCTTTTAGGCCGTGC 2572222 32 100.0 34 ................................ AGACGTCTTCGACTGATGGTGTAAGCCCTCAAGG 2572156 32 100.0 34 ................................ CGGCGGAGTGGTTGACACCACTCCTGCGTTACTA 2572090 32 100.0 33 ................................ CACATATTTATACTCAAGTTTACAGGATTAATA 2572025 32 100.0 34 ................................ TGAGATTGGTGAGTTTGGAATTGGTGATATAGCT 2571959 32 100.0 32 ................................ AGGGTCGCTTAGATGAGTATCGCACCTCTCTT 2571895 32 100.0 32 ................................ GATACAGATCTCGAAAAGCATGATGCTGAGGA 2571831 32 100.0 32 ................................ ATCGCCGCGAATCTTATGCCCGCGCGCGATGA 2571767 32 100.0 33 ................................ TGCCGGTAACGCTTGAAATGCTCCGCCTCGGAT 2571702 32 100.0 33 ................................ ACAAAAAGGGCTAAAATGGTTTTTAAACAATAT 2571637 32 100.0 34 ................................ GGGCGACGCTAACAGTATAAAATACTGCAAGGCC 2571571 32 100.0 32 ................................ AAAAAAAGCGGCCGAGATTGCAACACTGGCAC 2571507 32 100.0 33 ................................ AGCTGTATAACGTCGCGAGTGTCGCGTGGATTG 2571442 32 100.0 32 ................................ GGTACCCGTCGACGGCGATAGTGTCGGCGCAA 2571378 32 100.0 34 ................................ TTTTTTTGTAACAGTTATTTTCCCGAGACAATTC 2571312 32 100.0 32 ................................ TCTTTTGCCACCTGCCAACGTAGTCAATCAAA 2571248 32 100.0 33 ................................ GTTTGAGCAAAAATAAGTTGTTTATTTATTGCT 2571183 32 100.0 33 ................................ CGCCAAAAGGTATTGAGCATTATTAACGGATAG 2571118 32 100.0 32 ................................ GTATCATGTTTGTCTCTTTGTCCACGGGTCTC 2571054 32 100.0 34 ................................ TCTTTTTAGTTGTCTGCGTGTGCGCTGACATAGT 2570988 32 100.0 32 ................................ TACACCCAACTCTTTACACACCGCAAGATATA 2570924 32 100.0 32 ................................ ACAAGGGACGCGGCCGCTTCTTTTTTTGTAAC 2570860 32 100.0 33 ................................ AGCACGACCTCATACATAGCAGTTGCGAGCGTA 2570795 32 100.0 32 ................................ TGGTCGGCTCCGTATGCCTTTCAGTCGCCGTT 2570731 32 100.0 33 ................................ CTAAAACATTAGCAGCCTGTCTAAGAAAACCAA 2570666 32 100.0 32 ................................ AGTGCGGCCGAAATCTCTGTTTCTTCAAACAC 2570602 32 100.0 33 ................................ CTGTAAGCGTTCCGACTGTTGCATTTTTTGCAG 2570537 32 100.0 32 ................................ AACATCGGGTCAAAACAGAGTTTACACGGCGG 2570473 32 100.0 32 ................................ GATTCAAGGGTGAGCAGGTATATTTTATTGAT 2570409 32 100.0 33 ................................ AGCATAAAAAACCGGCAAGATCGTTTCTATGGG 2570344 32 100.0 33 ................................ AAAATTTTATCCGGTAACACTCGGAGCGGACGA 2570279 32 100.0 32 ................................ GGGGAGCCGTACGGAGCACGAAAGCCCGGAAG 2570215 32 100.0 34 ................................ GATGTCGGGGATAACAAGGGATTCGGCAAAGTCT 2570149 32 100.0 32 ................................ TTTTTGACGTTGGAAACGACACTGATCGCGTC 2570085 32 100.0 34 ................................ CAAAATTTCGCGCAATTGTTTTGTTAAGCCGGCG 2570019 32 100.0 33 ................................ TTTTTTCTCTCGGCCGATATATTGTTTAAAAAC 2569954 32 100.0 33 ................................ AAAATTTGATTTACTTGTTACGGTTGCTACAAA 2569889 32 100.0 32 ................................ AACGTCCTTGATTAACTGATCACGCTTAGCGC 2569825 32 100.0 33 ................................ CGCCTTGTGTGTCGGAAAAAACAAGGGCGTTTT 2569760 32 100.0 32 ................................ CAACGAATTTTAGAAGATCTAAAAATAAATCA 2569696 32 100.0 33 ................................ GACTTACACAGGGGAAACAGGTCTTGACGGGTA 2569631 32 100.0 35 ................................ ATTCGTTTGCTCCTTTTCATAATTCCAACATCGCG 2569564 32 100.0 34 ................................ TCCGATTCGCTCGTTGCGCTCTGCAATAATTTTG 2569498 32 100.0 33 ................................ TTCGCTCTCTAACATACCGTGGAGAGCGCTCCC 2569433 32 100.0 35 ................................ TCTGGATTTTTGGCGCTTGCAGACGCCAGGTACCG 2569366 32 100.0 33 ................................ GCCGCGCTGTAACAGCATGAATGCCCGGAGAAA 2569301 32 100.0 33 ................................ GCTTGTTGTGTAAAGGGGAATTTAAACCCGTGT 2569236 32 96.9 33 ....................A........... TGCCAAGTCTCCCAATCAGGACAACCCCACAGG 2569171 32 100.0 32 ................................ GTAACATTCAACCAGTGGCACGGATTCCGTGC 2569107 32 100.0 32 ................................ TCCACAGATTGAGGGAGAGAGAAAACGGATTA 2569043 32 100.0 34 ................................ GTGACAATGGAAGTATTAATCTTTCCGGCAACAC 2568977 32 100.0 33 ................................ GTTACGAGGATTGAAGGGAATTCACATTGCAAG 2568912 32 100.0 32 ................................ TTCTGATTCGCTTGAAAAAAGCGCCTTACTTA 2568848 32 100.0 33 ................................ GGCATGGCTTACCATCTCGGACAGCTATGCCGT 2568783 32 84.4 0 ....................A..AGG....G. | ========== ====== ====== ====== ================================ ==================================== ================== 128 32 99.9 33 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAC # Left flank : TGCTCGTCAGCTACGACGTGGCAAAAGACGAAAACGGAGCGCGGCGGTTGCGGCGGGTGGCAAAATTATGCGAAGATTTCGGTCAGCGCGTTCAGTATTCGGTTTTTGAATGTTTGGTCGATCCTGCGCAATGGATTGAGCTGAAATCCAAATTATGTAAGGAAATTAATCCCGAATTCGATAGTCTGCGTTTTTATCATTTGGGGGCGAATTGGCAGGCGAAAATGGAACACGTCGGAGCAAAGAAATCGGTTGATCCGCAAGATGTTCTATTATTCTGAACGAAAAATCAATGCGCGAATCCCGATCTGCCATGAACATTCCGTTACTTTCGCGCATGTAAAATATGCGAAATAACGTATTATTTGCGAGATATGCATATCCTTTTTTCTCGTTTGTGCGTCGCTTCTTCCTTTTATTGATAAACGGACTTGTTCCCGCTCTCCATTCGCGCAAACCGGGATTTGACTCCATATATTATAATAAGTTATACTCGTAGA # Right flank : GTGTTTATCAGTGTCGGCCGGTGGGGCATACGTTTCGTGTGTGGTTTCCGGTGGCTGTATCGATACGTATTGTGTGCTCGGATTGTCCGTGGGCTGGAATCGGTTGGGCGCCGTACTGTAGGTACCGTTCGGGGAGCGGCGCCGTGTAAAGGGAGTTCTTTTCTGTCGGCGTTTCTGCTTGCGGCGGCGGTGTCGTGGGTTACGTGCAGTCGGGCGCCGGTTTCGGTTTACCGGCTGTTTTTTTCTTCCGCGCGTCGCAGGGGGAGCCGGAGGAAAAGGCGGCCGGAGGCGGATGGGGAAGGGCGTCGGGTGCGGTGCGGTTGCGGAGAGGAGGCTGAAGGGAGGGCTGTTTGCGGGAGAAGCCGGGCGGCTTTACCGGAGGCGCGGGGGATGGAGCGAAAACGGCGAGCCGGTTGAGCGGTCCCCCGGCAAAAAAGGGGCGGAGAAGGGGAATACGGATTTTGATCGGTTCGGTCCGTTGTATCCGTTTTATGAAAGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2585593-2590043 **** Predicted by CRISPRDetect 2.4 *** >NC_015500.1 Treponema brennaborense DSM 12168, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2585593 32 100.0 33 ................................ CAATTAAGCCGGACATTCCAGACCTCACCTATG 2585658 32 100.0 32 ................................ TTACTGGTGAAATGGCAATCGGTAACGACGGT 2585722 32 100.0 34 ................................ GCTGTAGTCGTCTCCGGCGTCAATTACTACGCGG 2585788 32 100.0 33 ................................ TTTTTGTAATTCGCTATTGATAATTGCAATGTC 2585853 32 100.0 33 ................................ ATTTCAGCTGCGGTTGGAATAGTCGGCATTGCC 2585918 32 100.0 33 ................................ GAAGTCGTATCCGTGGTTTTGTCGGAAACGGTT 2585983 32 100.0 32 ................................ TTACTGCCGGCATTGTCCTCATGGTAAAACAT 2586047 32 100.0 34 ................................ TTGTAAAGTTTGCACCGATAATACTTGCAGTAGT 2586113 32 100.0 33 ................................ CGCCCCCCTTTGTATTTCGGAAAAATATCGCGC 2586178 32 100.0 32 ................................ TCCGTTGTTTGCGGGATATTGGGCGATTGTAT 2586242 32 100.0 34 ................................ TTGCGAACGAGAATACAGGAAACGCAGTATTGCC 2586308 32 100.0 33 ................................ GTCGTTAAAAGTATAATCCGATGTATGAATAAC 2586373 32 100.0 33 ................................ TACAGCTGGCGAAAGTTCGGGCTTGTTTGCAAT 2586438 32 100.0 32 ................................ TATCATCCTGGTTGGGCTTGGTGCTTTTGTGC 2586502 32 100.0 34 ................................ AATTTATACAATGTTAGACGGTGCCGGGATGATG 2586568 32 100.0 33 ................................ TGCTGGCAATAGGTATATACCGCGCCCAGTGCT 2586633 32 100.0 32 ................................ ATTTTTCAGGCTCCTATCCGCAAACAAGCGTT 2586697 32 100.0 33 ................................ GCGCCTTTAAGAAACGGAAGCTGTGTTATTCGC 2586762 32 100.0 33 ................................ AGTTTGGCGACATCCCGGAATATCAAACAAACC 2586827 32 100.0 33 ................................ CCAGTTGTCTTGTTTTTTGACACTGCGATTGCT 2586892 32 100.0 32 ................................ ATGTCGCGCCCGAACTCTACGTACGGCACGCC 2586956 32 100.0 33 ................................ CAGTTTTTTGTTTAAATTCGTTTAAATCTTTTG 2587021 32 100.0 33 ................................ ATTTCTATATGAAACCGTTGAACTTTGCGATAT 2587086 32 100.0 33 ................................ TTGCAATGTCAATAGTTAAATTCTCAATCCAGT 2587151 32 100.0 33 ................................ GTTTCTTATTGAGCGATATAATAAGAAAAACGT 2587216 32 100.0 34 ................................ ATATATTCATTAAAACTAATGTCATGCGATAACT 2587282 32 100.0 34 ................................ TCATCCATATTTAAATAAAAATTTCCAGTGAAAA 2587348 32 100.0 33 ................................ ATCAATAAATATAGCTTTATAATCTGCTCTCAA 2587413 32 100.0 33 ................................ ACACCTAATACAACTTTTGAGTTTACATAGCCA 2587478 32 100.0 33 ................................ TGATATGCAGTTACAATATGTTTCGTTGCAGAA 2587543 32 100.0 34 ................................ TTTTGGAATAGAATTTTTAGAAGATAGCAATATT 2587609 32 100.0 32 ................................ TGTTTTTAATTTATCAAATGTCAGGAAGATGA 2587673 32 100.0 32 ................................ GTATGGGTGCTCTTAACGATACTTATCCGTGT 2587737 32 100.0 34 ................................ AATTTTGAAAAGCAGCAAAGAAATCAGCCGATTA 2587803 32 100.0 34 ................................ AGTAAAAAAATGTGCGAAGCGCTGTACCCTGTAT 2587869 32 100.0 33 ................................ GTTGAATACACCTCTATAACAAATGAACCTAAA 2587934 32 100.0 33 ................................ CTTTTGTATCGCCTACTTACGCAGTGGCAGCGT 2587999 32 100.0 33 ................................ CGGATAAAACGGATAAACCGGAAACGGACGATC 2588064 32 100.0 32 ................................ AGTCCAACATGGACGGTATGGGAGAACGTGCC 2588128 32 100.0 32 ................................ GCTCCCCAGTACTGGGTGCCTGCTCCGGTTCC 2588192 32 100.0 32 ................................ CGCGTGGGTCGGTCGCGCCGGAAAAGCGATGT 2588256 32 100.0 34 ................................ CCTCATATTAGCCCGGTTTTGTGTATTGTATTAG 2588322 32 100.0 35 ................................ AAAATTTTATCCGGTAACACTCGGAGCGGACGAAC 2588389 32 100.0 32 ................................ AAACACATTTTTGCCGTTGTGTTTTTGTTCCA 2588453 32 100.0 33 ................................ ATAAGCTTCAAGCAGTCACCGCCTTCCAGTTTG 2588518 32 100.0 32 ................................ CAGAAGAAACGGTTAAAGAAAGATACGAAAGC 2588582 32 100.0 33 ................................ GGCGCAAGGAAGGGGCGTTCTCGACGCTCTCAA 2588647 32 100.0 33 ................................ TACCGATCTGCGGCATTACCGATATAAAAAAAT 2588712 32 100.0 34 ................................ TTTTGTATCGCCTACTTACGCAGTGGCAGCGTGT 2588778 32 100.0 33 ................................ TGTTTTTTTTCATTTTTAAAAGCTGGTCAAAAT 2588843 32 100.0 33 ................................ AGCTCTTGGTATCTGGAAGCGAACGGAAATAAT 2588908 32 100.0 32 ................................ CTTGTACGTACACGCAGATTCTTGCCGTTAAC 2588972 32 100.0 32 ................................ AATACCGATACGATAATAACCAACCATACACG 2589036 32 100.0 33 ................................ AACGTTGCCGTGCCAATTTCTAACTGCTACTTT 2589101 32 100.0 33 ................................ TACGACGACTTCTAAACCTCATTTAAATACCTC 2589166 32 100.0 34 ................................ CGCTCTCCCGGCGGGAAAGTTGACCCGTCGGAAA 2589232 32 100.0 34 ................................ TCGATGTAACGATCCTCAAGTTTTTTCTTTTGTT 2589298 32 100.0 34 ................................ ATTTTTGAGACAACGTATCGAGGCTCAATTGGAT 2589364 32 100.0 33 ................................ CAGTCTGAACTTTATTTTACAGGTTTTGCGGCT 2589429 32 100.0 33 ................................ CGCAGTTCAACGCGCTAATAATCCGCAAGAACG 2589494 32 100.0 33 ................................ ATTGAGCAGCCCGTTTTATAAAATCACGGGAAC 2589559 32 100.0 32 ................................ ATAAAAAAGCAGATATTCTCGAAGCCATAAAA 2589623 32 100.0 33 ................................ TACGGCGTAACTGATGAAAATGCCGTTGCAAGT 2589688 32 100.0 32 ................................ GTTTACCCCGCAGAAACGGAAGAGGAATTGTA 2589752 32 100.0 34 ................................ ACAGGTTATCATCGTCAGCCTCCGTATCGCGGTC 2589818 32 100.0 32 ................................ TTCGATTTCCGACAAGTCGCCGTTAAGATCCC 2589882 32 100.0 32 ................................ GGAAAACTCGGTACTGCTCCTTGTCTCTTACT 2589946 32 100.0 34 ................................ GTCAGGGTCAACTTGGTCAGAGTTGATTAAAGAG 2590012 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 69 32 100.0 33 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAC # Left flank : TGGGCTTCAATGCCCTATGCATACAGGATAACACCGGATACGGCGGCTGTCAAGTTATACTGCCAAAATACTAAAAAATATACAGCCAACATACTATTTCAATCCACGCGGCACGATTCGTCTGAACAGCACACGACTATACATACTATACGACACTTTTTTAAAACGGTACAGTGGAAAACACTTGAAATCACATTTTTTACAGTGCGACTGTACACCGGTATCTGAAAAGCTGACATGCCAACAACCAAAAGAAAATGTTCCGTATGGTTTGAAATTATGCTTTTTCTGATTTTCCGCGAAACACAATCTGACATGAAAACACCGTGTCTTTCGCGCATTCAAAACATGCGAAAAACTGTCACCTTTGCAAAATATTCATCCATTTGCTGTAATATATTCCAATCGTATTTTTATGACGGCACACTGCAACCGCATTTTTGCCCTTTCGCGAAATACAGAATTTGACTCTATATATTATAATAAGTTATACTCGTAGA # Right flank : CGCTGTACAAAACGGGCACGGCAGCAAGCAGGTGAGAACTGAGGACGGGATTCTTGAAATCAAGGTACCGCGAGACCGGCAGGGTGAGTTTGAACCGGCGATAATAGCCAAACACCAAAAAGAGTTTAAGGGTTTTGATGATAAAATCCTGTCAATGTATTCACGCGGAATGACAACGAGGGAAATACAGGGGCACCTGAAAGGTATTTATGCTATCGATGTGTCGCCCGATTTAATAAGCAGAGTAACCGATTCAGTAAAGGAAATGCTGGATGAATGGAAAGGGCGGAGCCTTGAATCATTTTACCCTGTGTTATTTCTCGATGCCATAAGGATTAATATCAGGGAAAACGGACAAATCATCAAGAAAGCGGTGTATCTTGCTCTTGCCATACGGATGGACGGACAAAAAGAACTTTAAGCTTCGCATAATCCGCCGTTTCCTCGCGCCCGCCTGCATATGTTCTAAAGGTTATTTCTGTTCTCATATTTTTTTCTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //