Array 1 74030-75278 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOHD01000004.1 Escherichia coli strain 607 BN4_607_1_(paired)_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74030 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 74091 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 74152 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 74213 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 74274 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 74335 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 74396 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 74457 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 74518 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 74579 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 74640 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 74701 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 74762 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 74823 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 74884 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 74945 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 75006 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 75067 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 75128 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 75189 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 75250 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 100978-102836 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOHD01000004.1 Escherichia coli strain 607 BN4_607_1_(paired)_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100978 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 101039 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 101100 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 101161 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 101222 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 101283 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 101344 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 101405 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 101466 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 101527 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 101588 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 101649 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 101710 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 101771 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 101832 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 101893 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 101954 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 102015 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 102076 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 102137 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 102198 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 102259 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 102320 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 102381 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 102442 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 102503 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 102564 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 102625 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 102686 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 102747 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 102808 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //