Array 1 5253-6928 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZR01000027.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CR484 NODE_27_length_54795_cov_68.640263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5253 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 5314 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 5375 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 5436 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 5497 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 5558 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5619 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 5680 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 5741 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5802 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5863 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5924 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5985 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6046 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6107 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6168 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6229 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6290 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6351 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6412 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6473 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6535 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6596 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6657 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6718 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6779 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6840 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6901 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23061-24659 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZR01000027.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CR484 NODE_27_length_54795_cov_68.640263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 23061 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23122 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 23183 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 23244 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 23305 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23367 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23428 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23489 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23550 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23611 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23672 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 23733 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 23794 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 23855 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 23916 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 23978 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 24081 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24142 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24203 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24264 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24325 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24386 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24447 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24508 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24569 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24630 29 96.6 0 A............................ | A [24656] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //