Array 1 2956-3129 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIL01000045.1 Cylindrospermopsis raciborskii CYRF CYRFScaffold_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 2956 28 100.0 48 ............................ CGTCGGGGTTAAAGACGCATATGGAAAGGAAGTGCTGTTGCCCTTGTA 3032 28 100.0 42 ............................ ATGGAAACGTGCCACCCTATATGCCTAATTTGTGCCATTCTG 3102 28 96.4 0 .............A.............. | ========== ====== ====== ====== ============================ ================================================ ================== 3 28 98.8 46 GTTCCCACTCGCTGGGGACATTAATTGA # Left flank : GGTCAAACATTGAATATTTATGTACTTCAGCAAGATGGAAAGTTAGATATTATCAGACTGGGAAATGATTTGAACAATGGCGAAACTTTTCAGTTTGTAGTTCCTGCAAATTGTTGGTTTGCAAGTGAACCTGCAACAAACAGTAATTTTAGTTTTGTAGGTTGCACAGTAGCTCCGGGATTTGATTTTGATGATTTTGAGATGGCAAAAGCAGATGAATTAGTAGCGCTTTTTCCGCAACATGAAACACCAATCAGAAGGTTGTGCAGGTTGTAAAAAGCAACTAAATTTTCAATGGATTTTTTAGTGCTTCTTGATATTCATTCCATATTTCATCTACAATTGTAATTCATCGGCAGTTGCACCTGCTGATTCGGCAGTTTGAATAGTTGTGGCAAATTTATTTTTCAGTAATCTAACAGGCACAACTTTCTTCATGCTCAACATCCTAAAATTTTGATGAGATGATGCTTCGGGTGTACATACAAATCTGCTTCCAA # Right flank : AATCAAAAACCTTCCCCAAGGTTTTTAAAAACCTGAAAAATCTAAGGATGATAAACATGCGATCTCGCAAGTGCGAGTGCTTCGCAAAACGCCCGTAGCGAGTACTTCGTAAATGCACTGGGGTAACTGCCATGCGATCGCAACCGATGTCCCAAAACCACAAGTACAAAACTGACTTTTGTTCTGGAGGTTTTAAGTAAATACTCCCATAATAAGGTTTAAGCTCTTTGGATCCCCCCAACCCCCCTTAAAAAGGGGGGCTAAATGCTTTGTGTTTAGTTTATGAGGAGTTAGGGCTGCTTATATTATAATGGAGTGGGGTAAGTGCTGAGGGAAATTATGAATGGGTAATGGGCGATCTCGCATAGCGAGTGCTTTGCAAACGCGTGTAGTAAGTACTTCGTAAACGAACTCAGTATCCCCTAACCTCCCCGTTCTCAAGGGAAATTTATGAACATGGTAAATAAGCGATCTCGCGTAGCGAGTACTTCCTTAATGTG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 46-733 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIL01000109.1 Cylindrospermopsis raciborskii CYRF CYRFScaffold_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================================================== ================== 46 29 100.0 47 ............................. TGGAAACTCTCCATTCTCTGGTGGTTATCCAGTAAACGGAGTTTGCT G [54] 123 29 100.0 46 ............................. TGGAAAACGCTCGTGGGTCTCATACTTCAATAAGTCCAAATACTCG 198 29 100.0 47 ............................. TGGAAACGTATTAAGCTTTAGTTTGTAGTATATTATAAATATAGCCC 274 29 100.0 48 ............................. ATGGAAACGGACTAAATTGCAATGTGCAATTACTTGATTACTGAAGTC 351 29 100.0 57 ............................. TGGAAACTTCAACCATGTCATAGACTAAAAATCCATGACTTTGAATTGACTTAGTTT 437 29 100.0 238 ............................. AAGTTTGCATAGATTATGAAGGAGTTTAAATGGTTTATATTGATGACGATGATAATATTGATGCCGATTTGGAGGAAGGAGACTTAGACTATTTTTGGCTAAACTCCCTCAGCGACAGTTATCAAAGATACCAAGAAGAACTAGAAGATGCTGAAATGGAAATAGCTTATGAGGAAGAGGAGCTTGGATGATGAATGGGAAAAAATGGCTAATTAAGTGCGGAATTAAGTATTGACAA 704 29 93.1 0 .....G....................T.. | C [728] ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================================================== ================== 7 29 99.0 81 GTTCCCACTCGCTGGGGACATTAATTGAA # Left flank : TGACCAAGGATGAACATCCCCAATCAAGTTAGAGGGTACAGTAGTG # Right flank : AATTAGAATTCTTCACAGTCATCGCTGTCGTCTTCAGGATAGTAGCTGTAAAACTTCCTCATAAAACTACAGTACAAACTTTTTTACCTCATCTGCATTACCGCTTATTTTGTCTGGCAGCCAGTCGCTGTTGTAAGCATTAACAAACTTGATCAAGTTATCTACAGTTGGGTGGAACTGTGGTAAGTCCTTGATTATAGATTCTATTATTTCCAGTTTGTTAAGTTGGTCACAGTTAATTTCTAACTCATTAAAGAAATACTTTAGAGACTCTTTGTTGTTAAACAATTCTTTGTGATACTCAACGTCAAAGTTCTCAACCCTTATAATTTCTCCAAGGTTTTCATTTAGCTTACCGCTGTTAACTATCAAACTTACAGGTGGAGTTGGAAAATACCCGAGGCTCTGTTCTCTTACAAAGTTGTTAATGTTATTAACAATGTAAGAATAACAAGGGTGGTAACTTCCACTAGGAAAAGAACGGTTCTCATCGATGACGT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2615-3008 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIL01000127.1 Cylindrospermopsis raciborskii CYRF CYRFScaffold_129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2615 36 100.0 35 .................................... AACCAAGAAGCTGTTTTAGGTGGTACAGTAGATAC 2686 36 100.0 37 .................................... TTGTTACTCCAGAGAATAAAACAGAATTTTTACGTGC 2759 36 100.0 36 .................................... GTTATATTAAACACATATAATATATCTATTAGAATA 2831 36 100.0 34 .................................... TTAGAAGTTTCAGAATATTTGGCTGATCTCGTAT 2901 36 100.0 36 .................................... TCACAAGATAGCCCCAAAGACCCAATTTATTTGCTT 2973 36 97.2 0 ..........................T......... | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 99.5 36 GTGTTTAAACCTTTGATGCCATTAGGCGTTGAGCAC # Left flank : GTTGGAGAAAGGTATATAAGTTGTTGGAAGGATATGGTGACAGAGTGCAATACTCAATTTTTCGCTCTTGGTTAACGATGCGATCGCGGGAAAAACTAAGATGGGAATTGGAAAGAATACTAACGGATGAGGACAGTTTACTACTAATTCGTCTTTCTAATCAGTGCGTGAACGATATACGGAAGTATAATCGTCCTAATGCTTGGTTGTTACCAGATCAATGTTACAAAATTTTTTAATGCAAGCACTGTAGATTGTTAAGTTAAAAAGAGCGAAAGGAAAACCAGAAAGTCTTTGAGAGTATGGGGTTGAGCATTTTTGGGGTTAGGAGAGGTGCTTGCATTTAGTCTGAAAACCATTCATAGCAAGTGATTGAGGAAATTTATCGGGGATTGAAAATTCAGTTGGGAGGACAATTTGAGTGAATCTCTTGCATTTAAAATTTGATGCTTGTATAATTAGGAAAGAATACCTTTACAATAAGGGTTTCAGCCACCGCT # Right flank : CATAAAAAGTATTAAGATAGATAAAACTATGTTAACTCGTGAGAATTTTTTTTTGAGGCGGAAAGTTTTTTGCCGGGTGCTTAGTTTATCCTTTTCACTAAGATAAGGAAATATATATGGAGTATATACATGTCAAGACATTTGGAAAGACTACTGGAAATAGACTCAATGATTAGAGAGCGAACCAGATTTACAACCCAGCAGATGGCAGAAAGATTGGAGGTTAGTGACCGCACAATACGCAATGATTTGGCATTCTTGCGTGACCGATTCAATGCTCCCCTAGCGTTTTGTTCTGTTAAGGGACATCACTATACAGACTCGGAATGGCGATTGCCTAGTATTAATCTGTCTATGAGAGAACTGTCTGCGATAATGCTAGGAGCAAAAATGCTCGAATCTTATACTGGCAGTGCTTATGTGGACGATTTAGATTCCGCAATTTTGCGTTTAAGTGAAAGAATACCAGATAAAATCCGAATTAATAGAGAAGAAGTAGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTAAACCTTTGATGCCATTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 995-1325 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIL01000152.1 Cylindrospermopsis raciborskii CYRF CYRFScaffold_154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 995 37 100.0 39 ..................................... ACAAATTATGGAGTTAGAAGCAAGGATTTGTATTGTGTA 1071 37 97.3 37 ....................................A GGGAGCTAGACCGACACTGTAGTCGGTCGTACCTCGC 1145 37 100.0 34 ..................................... TTTGTATGAGATCAAGTTAAGTTTTTCAGAAATT 1216 37 100.0 36 ..................................... TTGAAGAAATATTCAAATACCTTAATGGCTACAGAA 1289 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 99.5 37 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAACT # Left flank : ATAAGCGATCTCGCGTAGCGAGTACTTCCTTAATGTGCTGGATATTCGCTTACCTCTCCGTTCTCAAGGGAAATTTGTGAACATGGTTAGGAGCGATCGCGTGTAGCGAGTACTTTACAAACAAACGTAGGGAGTGATTCGCAAACACACCAAAAATCGTGACTGTGTTTTTTATCACTTTTTATAATTTATTTTTGTAAAAATAGAGAGAGTATAGTTATAACAAGATATTTGGGATAAAATATTGAAAAATATTGTAGTTAATGTAATAATAGGAAGAGAAATAAATATGACAATAAAATCAGTGAATAACGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAATACGTATAAGAGGCTAGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAGACAGGGTAAGGGATTAGAATGGAGGG # Right flank : TGTATGATT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 2301-2636 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIL01000164.1 Cylindrospermopsis raciborskii CYRF CYRFScaffold_166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2301 36 100.0 40 .................................... TTCGTCAACGCTTTCTTCATCATATCTCTTGCCATATTAA 2377 36 100.0 35 .................................... GCCCCAAGTTTTATTCACCTTTGAGTCCGTGGAAG 2448 36 100.0 43 .................................... TGATGAAAAAGAAGCGACGACATCTTGGGGAAAACCAGGGTGG 2527 36 100.0 40 .................................... GACTATTACAACGAGAATCCATAAATTCAACTAATTAACG 2603 33 88.9 0 T................................--- | G [2630] ========== ====== ====== ====== ==================================== =========================================== ================== 5 36 97.8 40 GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Left flank : CTTACACTCTACTTAGCTTTTTGGGCAATGAACTCTGAAAAGATAGGGATTATTTACCGCCCTAACGCTTACCGTAGAACTTCCAAAGCCTCCTCCTCGGTTTCAAAGATTTTAAATATTGTGTCCATCAATAGTTCTTCAAATACAGATTTGATTTTTGGCGGCATCTCGCAGAGGCAGAAACTGCCGCCCTCTTTGTCAGCATCCCTCATACCAGCCACCAAAGCTGTTAGACCACTCTCATCAATAAAATTTACCTCCCTGAGATTCACAACGATATGCTTAGATAGTTTTTTGCTAATACACTCCTGTAGTTTCAGCCTCAATTGCCAATTAGTGTCTCTATTTATAGGACCTGCTGGTGTTACAACAATCACCACAAGGCCGTGTCCACTGAAGTCGCCTAAGCGATGGCTTTTTATCTCTATCTGTAACTGACTCATTGTTGCTTCTTTTTCTACCATTTGTAAAGTTGACGTTGACTGGTTGAGCGTAACAGT # Right flank : | # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 27-212 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIL01000165.1 Cylindrospermopsis raciborskii CYRF CYRFScaffold_167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 27 36 100.0 37 .................................... AACCCAGGCAAATTCTAGGAATATAGCCTCGTGTCGA 100 36 100.0 41 .................................... AAGCCCGAGCTTTTTCATCCTGTTATTGAAATCTTCGTTAA 177 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 3 36 100.0 40 ATCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Left flank : AGCATAGATGAATTGTCTAATAGTATA # Right flank : CGGGGCTTAAGCACTGGGGGTTTGTTAACTCTGAATTCCGTTTTTTTGAAGAAACGGCTGAAGTAAACCTTTTATTTAGGTCGTTTCTACCCCACCACCTTGGGTGGAGTTTTTTTTGTAAATTTATGCGGGGGTTAACCCGCTAACAAAATGTTTAATTTTAATCCATTTAAAAGAAGTGCGAAAGAAATCTCATTGAAAGCAAAAGTTAGAATAAACGAACAACAAAATAACTCTCTCGAAAGAGAGAGCGAAAGCTTGCTCCAAGAGGAGCAACGGTGCCTTAAGGAATATGAGGAGCTCGTTAAGTACCTCAATGATCTCAAGGAGAAGAATAAAGTGCTCAGACAAGTTAATTTCGAGCTAAATGCTCTACTTGACAAGCGAATGATACAAGAAGAGGCGCGTGCTAAGGCAAAAGCGAAGGAGGAGATTAAGAAGCTCCCCTCGTATGAGGATTACCTCAAAAGCTTTAAGGAGGCCTTAGGGGAGATTTGTGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 710520-710330 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIL01000001.1 Cylindrospermopsis raciborskii CYRF CYRFScaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 710519 36 100.0 41 .................................... CCTTTATATGGTCAAAGGAAGGGTTAAACTCCTCACCTGAT 710442 36 100.0 41 .................................... TACATTTATTTGACCGTCAGCGAGGAGGTCGCGTAAGCAAA 710365 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 3 36 100.0 42 GTCCGCTTTCATCTAGGAAGTGGAATTAATGGAAAC # Left flank : CTAATTCCTGAGACTGATTTGTTAGTTCTTCAATCCGTGTGTTTAACTTATTTAAATCAGCTTGTTGAGAAACTATTTGCAGCTCAATCGAATTAAGTTCTAAGCTTTTAGAGTCTCTTCTGGATTCTAAAGATTCGACTTGAGAGTTGAGTTGTGTAATTCTTGCTTCTAAATTGTTTCTATCAATTATAGATTCTTCGATACTAATACGCAGTGACCTTAAGTCAGCAGCACGTTGTTCTAATTCCTGAGACTGATTTGTTAATTCTTCAATCCGCGCGCCTAACCTATTTAAATCAGCTTGTTGAGAAACTATTTGCAGCTCAATCGAATTAAGTTCTAATCTTCTAGAGTTTCTTCTGGATTCTAAAGATTCAACTTGAGAGTTGAGTTGTGTAATTCTTGCTTCTAAATTGTTTCTATCAATTATAGATTCTTCAATACTAGTACGCAATGGAAACTTTTTATAGATTTTGAGAATGAAGTATTGGCTCCTTTTT # Right flank : CATAAGCAATGCTCGGTGCGTGGCATGTGGGTATACACAAGTCCTTAGAAGACATGGGCATATTTACTGTACAACAATTGCGCGATCGCTTTCGGGAAAAACACGGACTAATAGGACACCTATCTGGCTACATTCCTGGTATTTTGGCACCTGCAGGACCTTTAGGACAGGGGCAACATTTTGCCATGGCAGCAGCTTTATTACACCGAGACAAACTGTTTCCCTTCACTGTGGGAAAGAGCTCGTGGCCCGCGCCATCCATCAATACAGCCGCGCGCCACGACCGCCCGTTTCTGGGCCATCAAATTGCGCGGCCATCCCGGAAAATCTCCTCGAGAGCGAACTCTTCGGACACGAGAAGGGCTCCTTCACCGGCGCCAGCGCGCAACGCATCGGGCGCTTCGAGCAATGCGACGGCGGCACGCTTTTCCTCGACGAAATCGGCGACATGCCGCTCGCCATCCAGAGCAAACTCCTCCGCGTCCTGCAGGACGGCACCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTTTCATCTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 846342-846679 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIL01000001.1 Cylindrospermopsis raciborskii CYRF CYRFScaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 846342 36 100.0 36 .................................... AAGGCAGTAACAAATTTAGCCCGCGTTCTTAAAGAA 846414 36 100.0 39 .................................... TCGGCATCCCTTAAAACGGCATCCCTTAAAACGGCATCC 846489 36 100.0 44 .................................... AGCTCTATATCCCAATTAATGGACACTTGCCCATACCTTATTAA 846569 36 100.0 40 .................................... GGTCTGAGACTTATGTCTCAGTTTCCACTCCCCATTTTTA 846645 35 94.4 0 ................................-.C. | ========== ====== ====== ====== ==================================== ============================================ ================== 5 36 98.9 40 GTTCTGACCTTCACTAGAAGGTATAGGTATTGCGAC # Left flank : CTACGTTTGAGAACAATATGGAAGCGACTCTAAGACAAAGAGGTTTTACCAAAATAGAACTTGACATATGATGGGTGACACGGGCGATCGCCTGACTTTTACTTCAGTGCGATCGCGAAGCACGCCCTACGGGCGATGGCATTAAACACACCAAAAATCGGGACTGTGTTTTTTATCACGTTTATAATTTATTATTGGAAAAATGGAGGAAGTATAGTTATAACAAGATATTTGGGATAAAATATTGAAAATTCTTATAATTAATGTAATAATAGGGAGGGAAATAAATATGACAATAAAATCAGTGAATAGCGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGACTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAATACGTATAAGAGGCTGAAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAGACAGGGTAAGGGATTAAAATGGAGGG # Right flank : CCAGGAACTACTAGAATTAAAAGATAAGGAAGAAACAGAAGCGGCCAGAGAAGACCTGATTAAATTAGACCTAAAAGTTAAATCCAGATGCAGGTTCTCCTACTGGTGCTAGCATGACCTTACCCGATGGTAAAATAGTTTATGCCAACCAGTATATAGTTGAGGGTGTACCCTTAACCTGGGGGAGAGGTAACCAAAGACTGTACTCGTGTTCCTACTAGTGCCGAATATGTAGCCAATGCCATCCGAGTGGCAAGAACCTGSKKAMCAGTKADGGTAAAGCTCTAGCAGATTCTGGTAATTATGAAAAAGCAGGGAGATTTTCGAGCGTTCTTTACAAATGGACCCGAATAATACAATAGCTTTAAATAGCTATGGTAAAGCTCTAGCAGATTCTGGTAATTATGAAAAAGCCAGGGAGATTTTCGAGCATTCTTACAAATTCACCCGAATAATATAAAGGTATTAAACAGCTATGCTAGAGTTTTGTCAGATTCTGG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTGACCTTCACTAGAAGGTATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 1977781-1978189 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIL01000001.1 Cylindrospermopsis raciborskii CYRF CYRFScaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1977781 36 100.0 35 .................................... GTAATAGACACTTTGTTATTTACAGGCCTTCAAGT 1977852 36 100.0 43 .................................... TGATGTGCTCCGGCATAAGGGATACTGCGGGTTACCGCAGGGA 1977931 36 100.0 36 .................................... GGTAAAACTAAAATCGTTTTTTAAGAACATGATTTT 1978003 36 100.0 40 .................................... TAAAAATGGGGAGTGGAAACTGAGACATAAGTCTCAGACC 1978079 36 100.0 39 .................................... AGCAGGTTCGCGTAAGCGACTTGTTTGCTGACGGGACTC 1978154 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 6 36 100.0 39 GTCGCAATACCTATACCTTCTAGTGAAGGTCAGAAC # Left flank : TTTCTATTTGACCATTTTGGATAAGGTTTTCGTAGTTAAAGACTACTCCAATAAAATAGTTTATTTGAGATATAATCTCAGCATTTTGCTCTGAATGCATGTATTGCATGTTGAGCTTAACTACGTTAATAGTAGATTTGTTAAGATTAGCTATTTTAGAAGCAATTGTATAAACAAAAGTTTCTAATTGTACTCCTGATAAGCCGACTGATAGAATAGAGCGAGGGTGAGGTTTAGCAAACCAAGTTTCAACTGTATTATATAAAGGGGTAGTAAGGATAGACTTTACACCATCAGGGGGTAGATTAAGTTTATCGTTATACTTTATATTTTCGCTAAAGACGTAAGGACAGGGGATTTTGATATCTTTTAAGGAATCAGATTGATCAGAGAGGGAAGATGTAACAGAGATAGAGTCCATAATTTTGATAAAAGGAATAGTGGGTTATTTTTGTCTTTTACTGTACTTTTTTTTTATGGCTTAGTAGCCGTAAGTAATT # Right flank : CGTACTWTATGGCCTGATCGCATTGTGCGACCTCACAGTCGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTATGACGCATTAGCTGCGGAAATTCAGACTTCTGTAGATATACTCAAAGCACAGGGTATTAACAAGATTATCTTGTTAGCTCACATGCAGCAGTTGAATATTGAGCGTGATGAATTAGCAAAACGCTTAAAGGATGTGGACATTATCATTGCAGGTGGCAGCCATGTCCTGTCATCAGATGCCAATGATGTGCTAAGAACAGGTGATAGCAGCAAAGGCGACTATCCCGTTATCAAGACAGGTGCAGATGGCAAGCCTATTTTGGTGGTCAATACTGATGCTAATTACAAGTACGTGGGGCGTTTAGTGGCTGAATTTGACCAGGATGGGGTGATTCAGGTTAACAAACTGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATACCTATACCTTCTAGTGAAGGTCAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 4 2182348-2182677 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIL01000001.1 Cylindrospermopsis raciborskii CYRF CYRFScaffold_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2182348 36 100.0 38 .................................... TTGTTGCCAGTCTTATCATCCCAGGAGTCAACTTTAAG 2182422 36 100.0 42 .................................... CCCACCCAAAGTGGTGAAAGGATAGAGACGAGCGGCTGTACA 2182500 36 100.0 36 .................................... ATTCTTCAAGACAGACCCAATTAGGTTGAGTTTTAA 2182572 36 100.0 34 .................................... ATCATACTGAATAGTAAATGGCTTGGTGTGAATA 2182642 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 5 36 100.0 38 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : GAAAATGTGTAGAGGTGCGATCGCCCGTAGCGATTGGTTCCCCAATAAACTTCCCTGCATCTTCTCAAAGGAAAATTTGAGGGCGGTTAAAAAGGCGATCGCACGTAGGGAGTGATTCGTAAACGTGCTGGGAGTGATTCACAAACAGACCAAAAATCGTGACTGTGTTTTTTATGACCTTTATAATTTATTATTGGAAAAATGGAGAAAGTATAGTTATAACAAGATATTTGGGATAAAATATTGAAAATTCTTATAATTAATGTAATAATAGGGAGGGAAATAAATATGACAATAAAATCAGTGAATAGCGAAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGTTCTAGACAGTAGACAGGGTAAGGGATTAAAATGGAGGG # Right flank : CCTGAGCACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTACGGTACGGGTACTTGTAATCTAAGTTTAGAGGTTTTTCTTGGAAGCCCTTAGGTACACTATCACTTTGTCCGAAGACGCCGTGTACTATCGTATTTCACCAGTCCCTGCGCATTTTRACTACAAGGCCTTTAYWMKSGCGAAGATAAACCGGTGACAGCAGCGAGAAAGTTTATTCACGCTGAAGGTATCTTGCCTCCTGCCTTGCTACTAGTAAAAAGGAACGAACACACCACAGACCGTTATTTTTGGGCGGAAAAGGGTCTGTTTGGTGCTCAATACGTAGAAGAAAATCATTTTTTATTCCCTAGCTTGAGAATGTTGGAAACTCCAGCTAGTGCAGAACAACTAGTGAATCTGGCAAATCGCTAAGTTCTGGAATGGTTTTTTACGCATTCAACTTCTTACTTCTGACCCCAAAATCAATTAACTGGCAAAAATTGAACAGTTGACGCAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 363-550 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIL01000017.1 Cylindrospermopsis raciborskii CYRF CYRFScaffold_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 363 38 100.0 38 ...................................... TATATGCATTTGATTAAGCGGATATAGTTTAATATTGC 439 38 100.0 36 ...................................... CTTGACAGTAAAATAAAAGTAGTTTATATTAATGAA 513 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 3 38 100.0 38 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAACTA # Left flank : AATGATGACCTCCCCTCCATCACCCTAACTGTTTCTCCCAGCAACGTCACGGAGGATGGCATGTCTAACCTCATGTACACCTTCACTCATAATGGAATCACCACTAACACCTTTACAGTTAACTACACTGTTGGTGGCACTGCTACTAATGGTAGTGATTACAATAATATTGGTACAAGCGTTACTTTTGCTGCTGGGTCATCCACTGCTACAGTTACGGTTGACCCCACTGCTGACAATAGAGTAGAAGCAAATGAAACCGCACTGTTCTTCCCAGACTCHATTTMTAGTTCCCACTCGCTGGGGACATTAAATTGAATGGAAACCTTCTATTGGGAAGTACTGCTCTTTTAACTGCAAATG # Right flank : AAACTCACAAACATAAAATCAGGTATGAAACTTCTAAAATGTTTATTGATGTCCGTAACTGCTATGTTCCTAATTTCAGGAATAGCATTTTCCCAAACAGCACTAGCTGACAATTGGACTTTTTACCACCCAATGAAGTTCAATATGGTTGATGCCAAGCTTAGTACGGAGTTTGGACAAAAAATAGATATTAATAATCCAACAAATACACGTGCATTTCGTCAATATCCTGGACTTTATCCCGTACTTGCTCGTTTGGTAATTACTCATTCGCCTTATAGAGAAGTAGAAGATATTTTAAAAATTCCGGGATTGACTGAAGAACAATTAGAATTGCTGCGTAATAACTTAGATAACTTTACCGTAGAGTCTGATAGTAACTCACTTGAACGCGACCTACTAAATTATTTGGAGAATGAAAACGCCCTGGTCCCGATGTAGTCCTTAACTTCCATAAAGCGCAGTGCTACTAATCGGTGAGAAAACCCAGAAAAATGCAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAACTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 788-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIL01000025.1 Cylindrospermopsis raciborskii CYRF CYRFScaffold_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 787 36 100.0 38 .................................... TTTTTAAAAATTCAAAGGTGTCCGGCTCATTCTAGTAA 713 36 100.0 38 .................................... TAAAGGAAGCTAAATCAGAGATTAAATAGAAGTTACTA 639 36 100.0 39 .................................... TTTTTATAGATTTTGAGAATGAAGTATTGGCTCCTTTTT 564 36 100.0 41 .................................... CCTTTATATGGTCAAAGGAAGGGTTAAACTCCTCACCTGAT 487 36 100.0 41 .................................... TACATTTATTTGACCGTCAGCGAGGAGGTCGCGTAAGCAAA 410 36 100.0 37 .................................... CTACTTCAAAGACGACCTCGGCTACCTTTACTAGCTA 337 36 100.0 44 .................................... AAGAACTGTTAACCTCCACTAAAGCTAAGGTGTACACTTTCTCT 257 36 100.0 35 .................................... AACCTGGTTGCTGACGGTCTGCCCGTCATTTACGA 186 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 9 36 100.0 39 GTCCGCTTTCATCTAGGAAGTGGAATTAATGGAAAC # Left flank : CGTATTTTTAGGAAAAAATTTGACTCGGTCGTTGTCAAAATTACCTATCTCTTGGTAGTTCCATTTTTCTGGGTATTTGATTGTAAATTGGGCTGGGGTTAAGGAATATGTTTGGGTGATGGGTTCAGGTGTATCTGCAATATGTAATAACCCCTATAATTCCTGTTTATTCCTATTAAAAATACTGCCTATTATAGCTATTTTATTCTCTTGTAGGGGGTTGATTATATTAATCCAGTATTTATTAATCCAGTATTTGTCGACTTTTTTGTGATTGGTTTATCAGTAGGGTTTCCTCGCTTTTCCCGTCCCAAACTGGTTACAGGAATACTTTTTAGTTCAATATCTTTAGATCTGTTAACACATCTTCTGCCAATTGGTAACGTTTTTTTTTTTTTTTTAGATAGTCAAAGGCTACCATTTTATCAATTATGTTTTCAGTDCTAGGAAGTGGAATTAATGGAAACGCGACCTTCTTGCTGACGGTAAGTTAACAATTA # Right flank : CGAWAATACTAACATTCTGGCTAATCCGCATATTTTACCGCGCTTATACCAACTGTTTGAGCCACGTTATGGATAAATTCCGGGGTTTCTTCTCTACCTTCTTGTTGTAATCTAGCTTCTAAATCTGTGCGAGCGCGGAAAACTGCTTCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTTTCATCTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //